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each input fasta file has more than one chromosome and plasmid? #46

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limin321 opened this issue May 21, 2020 · 0 comments
Open

each input fasta file has more than one chromosome and plasmid? #46

limin321 opened this issue May 21, 2020 · 0 comments

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@limin321
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I have dozens of bacterial genome with high assembled quality, and each genome has 2 chromosome and two or more plasmids. since parSNP only align core genes and call SNPs from core genes. How should I format my input file? Core genes of my bacteria are in two chromosomes. Thanks.
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