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InvertedLists.cpp
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InvertedLists.cpp
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/**
* Copyright (c) Facebook, Inc. and its affiliates.
*
* This source code is licensed under the MIT license found in the
* LICENSE file in the root directory of this source tree.
*/
// -*- c++ -*-
#include <faiss/InvertedLists.h>
#include <cstdio>
#include <faiss/utils/utils.h>
#include <faiss/impl/FaissAssert.h>
namespace faiss {
/*****************************************
* InvertedLists implementation
******************************************/
InvertedLists::InvertedLists (size_t nlist, size_t code_size):
nlist (nlist), code_size (code_size)
{
}
InvertedLists::~InvertedLists ()
{}
InvertedLists::idx_t InvertedLists::get_single_id (
size_t list_no, size_t offset) const
{
assert (offset < list_size (list_no));
return get_ids(list_no)[offset];
}
void InvertedLists::release_codes (size_t, const uint8_t *) const
{}
void InvertedLists::release_ids (size_t, const idx_t *) const
{}
void InvertedLists::prefetch_lists (const idx_t *, int) const
{}
const uint8_t * InvertedLists::get_single_code (
size_t list_no, size_t offset) const
{
assert (offset < list_size (list_no));
return get_codes(list_no) + offset * code_size;
}
size_t InvertedLists::add_entry (size_t list_no, idx_t theid,
const uint8_t *code)
{
return add_entries (list_no, 1, &theid, code);
}
void InvertedLists::update_entry (size_t list_no, size_t offset,
idx_t id, const uint8_t *code)
{
update_entries (list_no, offset, 1, &id, code);
}
void InvertedLists::reset () {
for (size_t i = 0; i < nlist; i++) {
resize (i, 0);
}
}
void InvertedLists::merge_from (InvertedLists *oivf, size_t add_id) {
#pragma omp parallel for
for (idx_t i = 0; i < nlist; i++) {
size_t list_size = oivf->list_size (i);
ScopedIds ids (oivf, i);
if (add_id == 0) {
add_entries (i, list_size, ids.get (),
ScopedCodes (oivf, i).get());
} else {
std::vector <idx_t> new_ids (list_size);
for (size_t j = 0; j < list_size; j++) {
new_ids [j] = ids[j] + add_id;
}
add_entries (i, list_size, new_ids.data(),
ScopedCodes (oivf, i).get());
}
oivf->resize (i, 0);
}
}
double InvertedLists::imbalance_factor () const {
std::vector<int> hist(nlist);
for (size_t i = 0; i < nlist; i++) {
hist[i] = list_size(i);
}
return faiss::imbalance_factor(nlist, hist.data());
}
void InvertedLists::print_stats () const {
std::vector<int> sizes(40);
for (size_t i = 0; i < nlist; i++) {
for (size_t j = 0; j < sizes.size(); j++) {
if ((list_size(i) >> j) == 0) {
sizes[j]++;
break;
}
}
}
for (size_t i = 0; i < sizes.size(); i++) {
if (sizes[i]) {
printf("list size in < %d: %d instances\n", 1 << i, sizes[i]);
}
}
}
size_t InvertedLists::compute_ntotal () const {
size_t tot = 0;
for (size_t i = 0; i < nlist; i++) {
tot += list_size(i);
}
return tot;
}
/*****************************************
* ArrayInvertedLists implementation
******************************************/
ArrayInvertedLists::ArrayInvertedLists (size_t nlist, size_t code_size):
InvertedLists (nlist, code_size)
{
ids.resize (nlist);
codes.resize (nlist);
}
size_t ArrayInvertedLists::add_entries (
size_t list_no, size_t n_entry,
const idx_t* ids_in, const uint8_t *code)
{
if (n_entry == 0) return 0;
assert (list_no < nlist);
size_t o = ids [list_no].size();
ids [list_no].resize (o + n_entry);
memcpy (&ids[list_no][o], ids_in, sizeof (ids_in[0]) * n_entry);
codes [list_no].resize ((o + n_entry) * code_size);
memcpy (&codes[list_no][o * code_size], code, code_size * n_entry);
return o;
}
size_t ArrayInvertedLists::list_size(size_t list_no) const
{
assert (list_no < nlist);
return ids[list_no].size();
}
const uint8_t * ArrayInvertedLists::get_codes (size_t list_no) const
{
assert (list_no < nlist);
return codes[list_no].data();
}
const InvertedLists::idx_t * ArrayInvertedLists::get_ids (size_t list_no) const
{
assert (list_no < nlist);
return ids[list_no].data();
}
void ArrayInvertedLists::resize (size_t list_no, size_t new_size)
{
ids[list_no].resize (new_size);
codes[list_no].resize (new_size * code_size);
}
void ArrayInvertedLists::update_entries (
size_t list_no, size_t offset, size_t n_entry,
const idx_t *ids_in, const uint8_t *codes_in)
{
assert (list_no < nlist);
assert (n_entry + offset <= ids[list_no].size());
memcpy (&ids[list_no][offset], ids_in, sizeof(ids_in[0]) * n_entry);
memcpy (&codes[list_no][offset * code_size], codes_in, code_size * n_entry);
}
ArrayInvertedLists::~ArrayInvertedLists ()
{}
/*****************************************************************
* Meta-inverted list implementations
*****************************************************************/
size_t ReadOnlyInvertedLists::add_entries (
size_t , size_t ,
const idx_t* , const uint8_t *)
{
FAISS_THROW_MSG ("not implemented");
}
void ReadOnlyInvertedLists::update_entries (size_t, size_t , size_t ,
const idx_t *, const uint8_t *)
{
FAISS_THROW_MSG ("not implemented");
}
void ReadOnlyInvertedLists::resize (size_t , size_t )
{
FAISS_THROW_MSG ("not implemented");
}
/*****************************************
* HStackInvertedLists implementation
******************************************/
HStackInvertedLists::HStackInvertedLists (
int nil, const InvertedLists **ils_in):
ReadOnlyInvertedLists (nil > 0 ? ils_in[0]->nlist : 0,
nil > 0 ? ils_in[0]->code_size : 0)
{
FAISS_THROW_IF_NOT (nil > 0);
for (int i = 0; i < nil; i++) {
ils.push_back (ils_in[i]);
FAISS_THROW_IF_NOT (ils_in[i]->code_size == code_size &&
ils_in[i]->nlist == nlist);
}
}
size_t HStackInvertedLists::list_size(size_t list_no) const
{
size_t sz = 0;
for (int i = 0; i < ils.size(); i++) {
const InvertedLists *il = ils[i];
sz += il->list_size (list_no);
}
return sz;
}
const uint8_t * HStackInvertedLists::get_codes (size_t list_no) const
{
uint8_t *codes = new uint8_t [code_size * list_size(list_no)], *c = codes;
for (int i = 0; i < ils.size(); i++) {
const InvertedLists *il = ils[i];
size_t sz = il->list_size(list_no) * code_size;
if (sz > 0) {
memcpy (c, ScopedCodes (il, list_no).get(), sz);
c += sz;
}
}
return codes;
}
const uint8_t * HStackInvertedLists::get_single_code (
size_t list_no, size_t offset) const
{
for (int i = 0; i < ils.size(); i++) {
const InvertedLists *il = ils[i];
size_t sz = il->list_size (list_no);
if (offset < sz) {
// here we have to copy the code, otherwise it will crash at dealloc
uint8_t * code = new uint8_t [code_size];
memcpy (code, ScopedCodes (il, list_no, offset).get(), code_size);
return code;
}
offset -= sz;
}
FAISS_THROW_FMT ("offset %ld unknown", offset);
}
void HStackInvertedLists::release_codes (size_t, const uint8_t *codes) const {
delete [] codes;
}
const Index::idx_t * HStackInvertedLists::get_ids (size_t list_no) const
{
idx_t *ids = new idx_t [list_size(list_no)], *c = ids;
for (int i = 0; i < ils.size(); i++) {
const InvertedLists *il = ils[i];
size_t sz = il->list_size(list_no);
if (sz > 0) {
memcpy (c, ScopedIds (il, list_no).get(), sz * sizeof(idx_t));
c += sz;
}
}
return ids;
}
Index::idx_t HStackInvertedLists::get_single_id (
size_t list_no, size_t offset) const
{
for (int i = 0; i < ils.size(); i++) {
const InvertedLists *il = ils[i];
size_t sz = il->list_size (list_no);
if (offset < sz) {
return il->get_single_id (list_no, offset);
}
offset -= sz;
}
FAISS_THROW_FMT ("offset %ld unknown", offset);
}
void HStackInvertedLists::release_ids (size_t, const idx_t *ids) const {
delete [] ids;
}
void HStackInvertedLists::prefetch_lists (const idx_t *list_nos, int nlist) const
{
for (int i = 0; i < ils.size(); i++) {
const InvertedLists *il = ils[i];
il->prefetch_lists (list_nos, nlist);
}
}
/*****************************************
* SliceInvertedLists implementation
******************************************/
namespace {
using idx_t = InvertedLists::idx_t;
idx_t translate_list_no (const SliceInvertedLists *sil,
idx_t list_no) {
FAISS_THROW_IF_NOT (list_no >= 0 && list_no < sil->nlist);
return list_no + sil->i0;
}
};
SliceInvertedLists::SliceInvertedLists (
const InvertedLists *il, idx_t i0, idx_t i1):
ReadOnlyInvertedLists (i1 - i0, il->code_size),
il (il), i0(i0), i1(i1)
{
}
size_t SliceInvertedLists::list_size(size_t list_no) const
{
return il->list_size (translate_list_no (this, list_no));
}
const uint8_t * SliceInvertedLists::get_codes (size_t list_no) const
{
return il->get_codes (translate_list_no (this, list_no));
}
const uint8_t * SliceInvertedLists::get_single_code (
size_t list_no, size_t offset) const
{
return il->get_single_code (translate_list_no (this, list_no), offset);
}
void SliceInvertedLists::release_codes (
size_t list_no, const uint8_t *codes) const {
return il->release_codes (translate_list_no (this, list_no), codes);
}
const Index::idx_t * SliceInvertedLists::get_ids (size_t list_no) const
{
return il->get_ids (translate_list_no (this, list_no));
}
Index::idx_t SliceInvertedLists::get_single_id (
size_t list_no, size_t offset) const
{
return il->get_single_id (translate_list_no (this, list_no), offset);
}
void SliceInvertedLists::release_ids (size_t list_no, const idx_t *ids) const {
return il->release_ids (translate_list_no (this, list_no), ids);
}
void SliceInvertedLists::prefetch_lists (const idx_t *list_nos, int nlist) const
{
std::vector<idx_t> translated_list_nos;
for (int j = 0; j < nlist; j++) {
idx_t list_no = list_nos[j];
if (list_no < 0) continue;
translated_list_nos.push_back (translate_list_no (this, list_no));
}
il->prefetch_lists (translated_list_nos.data(),
translated_list_nos.size());
}
/*****************************************
* VStackInvertedLists implementation
******************************************/
namespace {
using idx_t = InvertedLists::idx_t;
// find the invlist this number belongs to
int translate_list_no (const VStackInvertedLists *vil,
idx_t list_no) {
FAISS_THROW_IF_NOT (list_no >= 0 && list_no < vil->nlist);
int i0 = 0, i1 = vil->ils.size();
const idx_t *cumsz = vil->cumsz.data();
while (i0 + 1 < i1) {
int imed = (i0 + i1) / 2;
if (list_no >= cumsz[imed]) {
i0 = imed;
} else {
i1 = imed;
}
}
assert(list_no >= cumsz[i0] && list_no < cumsz[i0 + 1]);
return i0;
}
idx_t sum_il_sizes (int nil, const InvertedLists **ils_in) {
idx_t tot = 0;
for (int i = 0; i < nil; i++) {
tot += ils_in[i]->nlist;
}
return tot;
}
};
VStackInvertedLists::VStackInvertedLists (
int nil, const InvertedLists **ils_in):
ReadOnlyInvertedLists (sum_il_sizes(nil, ils_in),
nil > 0 ? ils_in[0]->code_size : 0)
{
FAISS_THROW_IF_NOT (nil > 0);
cumsz.resize (nil + 1);
for (int i = 0; i < nil; i++) {
ils.push_back (ils_in[i]);
FAISS_THROW_IF_NOT (ils_in[i]->code_size == code_size);
cumsz[i + 1] = cumsz[i] + ils_in[i]->nlist;
}
}
size_t VStackInvertedLists::list_size(size_t list_no) const
{
int i = translate_list_no (this, list_no);
list_no -= cumsz[i];
return ils[i]->list_size (list_no);
}
const uint8_t * VStackInvertedLists::get_codes (size_t list_no) const
{
int i = translate_list_no (this, list_no);
list_no -= cumsz[i];
return ils[i]->get_codes (list_no);
}
const uint8_t * VStackInvertedLists::get_single_code (
size_t list_no, size_t offset) const
{
int i = translate_list_no (this, list_no);
list_no -= cumsz[i];
return ils[i]->get_single_code (list_no, offset);
}
void VStackInvertedLists::release_codes (
size_t list_no, const uint8_t *codes) const {
int i = translate_list_no (this, list_no);
list_no -= cumsz[i];
return ils[i]->release_codes (list_no, codes);
}
const Index::idx_t * VStackInvertedLists::get_ids (size_t list_no) const
{
int i = translate_list_no (this, list_no);
list_no -= cumsz[i];
return ils[i]->get_ids (list_no);
}
Index::idx_t VStackInvertedLists::get_single_id (
size_t list_no, size_t offset) const
{
int i = translate_list_no (this, list_no);
list_no -= cumsz[i];
return ils[i]->get_single_id (list_no, offset);
}
void VStackInvertedLists::release_ids (size_t list_no, const idx_t *ids) const {
int i = translate_list_no (this, list_no);
list_no -= cumsz[i];
return ils[i]->release_ids (list_no, ids);
}
void VStackInvertedLists::prefetch_lists (
const idx_t *list_nos, int nlist) const
{
std::vector<int> ilno (nlist, -1);
std::vector<int> n_per_il (ils.size(), 0);
for (int j = 0; j < nlist; j++) {
idx_t list_no = list_nos[j];
if (list_no < 0) continue;
int i = ilno[j] = translate_list_no (this, list_no);
n_per_il[i]++;
}
std::vector<int> cum_n_per_il (ils.size() + 1, 0);
for (int j = 0; j < ils.size(); j++) {
cum_n_per_il[j + 1] = cum_n_per_il[j] + n_per_il[j];
}
std::vector<idx_t> sorted_list_nos (cum_n_per_il.back());
for (int j = 0; j < nlist; j++) {
idx_t list_no = list_nos[j];
if (list_no < 0) continue;
int i = ilno[j];
list_no -= cumsz[i];
sorted_list_nos[cum_n_per_il[i]++] = list_no;
}
int i0 = 0;
for (int j = 0; j < ils.size(); j++) {
int i1 = i0 + n_per_il[j];
if (i1 > i0) {
ils[j]->prefetch_lists (sorted_list_nos.data() + i0,
i1 - i0);
}
i0 = i1;
}
}
/*****************************************
* MaskedInvertedLists implementation
******************************************/
MaskedInvertedLists::MaskedInvertedLists (const InvertedLists *il0,
const InvertedLists *il1):
ReadOnlyInvertedLists (il0->nlist, il0->code_size),
il0 (il0), il1 (il1)
{
FAISS_THROW_IF_NOT (il1->nlist == nlist);
FAISS_THROW_IF_NOT (il1->code_size == code_size);
}
size_t MaskedInvertedLists::list_size(size_t list_no) const
{
size_t sz = il0->list_size(list_no);
return sz ? sz : il1->list_size(list_no);
}
const uint8_t * MaskedInvertedLists::get_codes (size_t list_no) const
{
size_t sz = il0->list_size(list_no);
return (sz ? il0 : il1)->get_codes(list_no);
}
const idx_t * MaskedInvertedLists::get_ids (size_t list_no) const
{
size_t sz = il0->list_size (list_no);
return (sz ? il0 : il1)->get_ids (list_no);
}
void MaskedInvertedLists::release_codes (
size_t list_no, const uint8_t *codes) const
{
size_t sz = il0->list_size (list_no);
(sz ? il0 : il1)->release_codes (list_no, codes);
}
void MaskedInvertedLists::release_ids (size_t list_no, const idx_t *ids) const
{
size_t sz = il0->list_size (list_no);
(sz ? il0 : il1)->release_ids (list_no, ids);
}
idx_t MaskedInvertedLists::get_single_id (size_t list_no, size_t offset) const
{
size_t sz = il0->list_size (list_no);
return (sz ? il0 : il1)->get_single_id (list_no, offset);
}
const uint8_t * MaskedInvertedLists::get_single_code (
size_t list_no, size_t offset) const
{
size_t sz = il0->list_size (list_no);
return (sz ? il0 : il1)->get_single_code (list_no, offset);
}
void MaskedInvertedLists::prefetch_lists (
const idx_t *list_nos, int nlist) const
{
std::vector<idx_t> list0, list1;
for (int i = 0; i < nlist; i++) {
idx_t list_no = list_nos[i];
if (list_no < 0) continue;
size_t sz = il0->list_size(list_no);
(sz ? list0 : list1).push_back (list_no);
}
il0->prefetch_lists (list0.data(), list0.size());
il1->prefetch_lists (list1.data(), list1.size());
}
} // namespace faiss