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+ ref & mention of ES50 in readme #38

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7yl4r opened this issue Jul 19, 2022 · 3 comments
Open
3 tasks

+ ref & mention of ES50 in readme #38

7yl4r opened this issue Jul 19, 2022 · 3 comments

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@7yl4r
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7yl4r commented Jul 19, 2022

  • find a definitive reference for Hulbert (sp?) index (aka ES50)
  • add the info to this wikipedia page
  • add to the README a little note about ES50 & link to the wikipedia page
@7yl4r
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7yl4r commented Jul 19, 2022

Recommendations from Pieter

From Abby:

Existing iobis notebook:

I'm still trying to figure out how es50 is actually calculated. Pieter uses this equation esi = case_when(
        n-ni >= esn ~ 1-exp(lngamma(n-ni+1)+lngamma(n-esn+1)-lngamma(n-ni-esn+1)-lngamma(n+1)),
        n >= esn ~ 1 and then sums (esi) for a cell.
John Waller at GBIF used entropart::Hurlburt(3).
In the OceanHackWeek project we have been using vegan::rarefy(as.integer(species_counts$x), 50).
Are these all the same? Does anyone know?

@7yl4r
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7yl4r commented Oct 22, 2022

implementation started here on the ES50 branch. I am holding off on finishing it, however, since another more comprehensive summary was created by Stephen Formel (rmd d/l here). There was discussion of putting this into a separate repo... Where should it go?

@7yl4r
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7yl4r commented Dec 1, 2022

In a discussion today Mimi D'lorio highlighted the importance short summary of caveats on the ES50 index.

Getting a draft of this up somewhere is critically important to do before we can move forward.

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