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Some of the 'genomes' I downloaded and tried to input were actually unfinished assemblies:
e.g. GCA_001057035.1_ASM105703v1_genomic.fna
These contained symbols such as W/R/S in the sequence itself.
I would suggest that either if this is encountered that adrsm reports a nice error (rather than traceback) stating this isn't accepted, and please fix.
You could also suggest the following command to clean it up:
sed -i '/^[^>]/s/[R|Y|W|S|M|K|H|B|V|D]/N/g' *.fna
The text was updated successfully, but these errors were encountered:
Some of the 'genomes' I downloaded and tried to input were actually unfinished assemblies:
e.g. GCA_001057035.1_ASM105703v1_genomic.fna
These contained symbols such as W/R/S in the sequence itself.
I would suggest that either if this is encountered that
adrsm
reports a nice error (rather than traceback) stating this isn't accepted, and please fix.You could also suggest the following command to clean it up:
The text was updated successfully, but these errors were encountered: