do_prediction.yml

on:
  workflow_dispatch:
  schedule:
  - cron: "0 20 * * *"
#  push:


jobs:
  build:
    if: github.repository == 'mdietze/FluxCourseForecast'  ## update to your username
    runs-on: ubuntu-latest
    env:
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
    container:
      image: rocker/geospatial
    permissions:
      # Give the default GITHUB_TOKEN write permission to commit and push the changed files back to the repository.
      contents: write
    steps:
      - name: Checkout repo
        uses: actions/checkout@v3
        with:
          fetch-depth: 0
      - name: install R packages
        run: R -e 'source("install.R")' 
      - name: Run automatic prediction file
        run: Rscript forecast.R
      - name: Commit changes
        run: 	git config --global --add safe.directory /__w/FluxCourseForecast/FluxCourseForecast
      - uses: EndBug/add-and-commit@v9
        with:
          add: 'analysis/*.RDS'
          author_name: Michael Dietze
          author_email: dietze@bu.edu
#        uses: stefanzweifel/git-auto-commit-action@v4
#          with:
#            file_pattern: 'analysis/*.RDS'