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@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
@prefix obo: <http://purl.obolibrary.org/obo/> .
@prefix faldo: <http://biohackathon.org/resource/faldo#> .
@prefix hco: <http://identifiers.org/hco/> .
# Base classes and properties
<http://identifiers.org/hco/>
rdf:type owl:Ontology ;
dct:license <http://creativecommons.org/publicdomain/zero/1.0/> ;
rdfs:seeAlso <https://github.com/med2rdf/hco/> ;
rdfs:seeAlso <http://biohackathon.org/resource/hco/> ;
owl:versionInfo "2020-07-15"^^xsd:date .
hco:HumanChromosome
rdf:type owl:Class ;
rdfs:label "Human chromosome" ;
skos:definition "Collection of human chromosomes" ;
rdfs:seeAlso <http://identifiers.org/taxonomy/9606> ;
skos:broader obo:SO_0000340 . # chromosome
hco:GenomeBuild
rdf:type owl:Class ;
rdfs:label "Genome build" ;
skos:definition "Version of a genome assembly" ;
skos:broader obo:SO_0001505 . # reference_genome
hco:Cytoband
rdf:type owl:Class ;
rdfs:label "Cytoband" ;
skos:definition "Chromosome band" ;
skos:broader obo:SO_0000341 . # chromosome_band
hco:CytobandType
rdf:type owl:Class ;
rdfs:label "Cytoband type" ;
skos:definition "Cytoband types including Giemsa-banding annotations" .
hco:build
rdf:type owl:ObjectProperty ;
rdfs:label "build" ;
rdfs:domain hco:HumanChromosome ;
rdfs:range hco:GenomeBuild .
hco:insdc
rdf:type owl:ObjectProperty ;
rdfs:label "INSDC" ;
rdfs:domain hco:HumanChromosome ;
rdfs:range rdfs:Resource .
hco:refseq
rdf:type owl:ObjectProperty ;
rdfs:label "RefSeq" ;
rdfs:domain hco:HumanChromosome ;
rdfs:range rdfs:Resource .
hco:ucsc
rdf:type owl:ObjectProperty ;
rdfs:label "UCSC" ;
rdfs:domain hco:HumanChromosome ;
rdfs:range rdfs:Resource .
hco:ensembl
rdf:type owl:ObjectProperty ;
rdfs:label "Ensembl" ;
rdfs:domain hco:HumanChromosome ;
rdfs:range rdfs:Resource .
hco:length
rdf:type owl:DatatypeProperty ;
rdfs:label "length" ;
rdfs:domain hco:GenomeBuild ;
rdfs:range xsd:integer .
hco:bandtype
rdf:type owl:DatatypeProperty ;
rdfs:label "cytoband type" ;
rdfs:domain hco:Cytoband ;
rdfs:range hco:CytobandType .
# Human chromosome classes and instances
hco:1
rdf:type owl:Class ;
rdfs:label "Human chromosome 1" ;
rdfs:subClassOf hco:HumanChromosome .
hco:1\/GRCh37
rdf:type hco:1 ;
hco:build hco:GRCh37 ;
hco:length 249250621 ;
skos:altLabel "GPC_000000025" ;
hco:insdc <http://identifiers.org/insdc/CM000663.1> ;
hco:refseq <http://identifiers.org/refseq/NC_000001.10> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr1> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh37/1> ,
<http://grch37.ensembl.org/Homo_sapiens/Location/Chromosome?r=1> .
hco:1\/GRCh38
rdf:type hco:1 ;
hco:build hco:GRCh38 ;
hco:length 248956422 ;
skos:altLabel "GPC_000001293" ;
hco:insdc <http://identifiers.org/insdc/CM000663.2> ;
hco:refseq <http://identifiers.org/refseq/NC_000001.11> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr1> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh38/1> ,
<http://www.ensembl.org/Homo_sapiens/Location/Chromosome?r=1> .
hco:2
rdf:type owl:Class ;
rdfs:label "Human chromosome 2" ;
rdfs:subClassOf hco:HumanChromosome .
hco:2\/GRCh37
rdf:type hco:2 ;
hco:build hco:GRCh37 ;
hco:length 243199373 ;
skos:altLabel "GPC_000000026" ;
hco:insdc <http://identifiers.org/insdc/CM000664.1> ;
hco:refseq <http://identifiers.org/refseq/NC_000002.11> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr2> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh37/2> ,
<http://grch37.ensembl.org/Homo_sapiens/Location/Chromosome?r=2> .
hco:2\/GRCh38
rdf:type hco:2 ;
hco:build hco:GRCh38 ;
hco:length 242193529 ;
skos:altLabel "GPC_000001294" ;
hco:insdc <http://identifiers.org/insdc/CM000664.2> ;
hco:refseq <http://identifiers.org/refseq/NC_000002.12> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr2> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh38/2> ,
<http://www.ensembl.org/Homo_sapiens/Location/Chromosome?r=2> .
hco:3
rdf:type owl:Class ;
rdfs:label "Human chromosome 3" ;
rdfs:subClassOf hco:HumanChromosome .
hco:3\/GRCh37
rdf:type hco:3 ;
hco:build hco:GRCh37 ;
hco:length 198022430 ;
skos:altLabel "GPC_000000027" ;
hco:insdc <http://identifiers.org/insdc/CM000665.1> ;
hco:refseq <http://identifiers.org/refseq/NC_000003.11> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr3> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh37/3> ,
<http://grch37.ensembl.org/Homo_sapiens/Location/Chromosome?r=3> .
hco:3\/GRCh38
rdf:type hco:3 ;
hco:build hco:GRCh38 ;
hco:length 198295559 ;
skos:altLabel "GPC_000001295" ;
hco:insdc <http://identifiers.org/insdc/CM000665.2> ;
hco:refseq <http://identifiers.org/refseq/NC_000003.12> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr3> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh38/3> ,
<http://www.ensembl.org/Homo_sapiens/Location/Chromosome?r=3> .
hco:4
rdf:type owl:Class ;
rdfs:label "Human chromosome 4" ;
rdfs:subClassOf hco:HumanChromosome .
hco:4\/GRCh37
rdf:type hco:4 ;
hco:build hco:GRCh37 ;
hco:length 191154276 ;
skos:altLabel "GPC_000000028" ;
hco:insdc <http://identifiers.org/insdc/CM000666.1> ;
hco:refseq <http://identifiers.org/refseq/NC_000004.11> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr4> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh37/4> ,
<http://grch37.ensembl.org/Homo_sapiens/Location/Chromosome?r=4> .
hco:4\/GRCh38
rdf:type hco:4 ;
hco:build hco:GRCh38 ;
hco:length 190214555 ;
skos:altLabel "GPC_000001296" ;
hco:insdc <http://identifiers.org/insdc/CM000666.2> ;
hco:refseq <http://identifiers.org/refseq/NC_000004.12> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr4> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh38/4> ,
<http://www.ensembl.org/Homo_sapiens/Location/Chromosome?r=4> .
hco:5
rdf:type owl:Class ;
rdfs:label "Human chromosome 5" ;
rdfs:subClassOf hco:HumanChromosome .
hco:5\/GRCh37
rdf:type hco:5 ;
hco:build hco:GRCh37 ;
hco:length 180915260 ;
skos:altLabel "GPC_000000029" ;
hco:insdc <http://identifiers.org/insdc/CM000667.1> ;
hco:refseq <http://identifiers.org/refseq/NC_000005.9> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr5> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh37/5> ,
<http://grch37.ensembl.org/Homo_sapiens/Location/Chromosome?r=5> .
hco:5\/GRCh38
rdf:type hco:5 ;
hco:build hco:GRCh38 ;
hco:length 181538259 ;
skos:altLabel "GPC_000001297" ;
hco:insdc <http://identifiers.org/insdc/CM000667.2> ;
hco:refseq <http://identifiers.org/refseq/NC_000005.10> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr5> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh38/5> ,
<http://www.ensembl.org/Homo_sapiens/Location/Chromosome?r=5> .
hco:6
rdf:type owl:Class ;
rdfs:label "Human chromosome 6" ;
rdfs:subClassOf hco:HumanChromosome .
hco:6\/GRCh37
rdf:type hco:6 ;
hco:build hco:GRCh37 ;
hco:length 171115067 ;
skos:altLabel "GPC_000000030" ;
hco:insdc <http://identifiers.org/insdc/CM000668.1> ;
hco:refseq <http://identifiers.org/refseq/NC_000006.11> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr6> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh37/6> ,
<http://grch37.ensembl.org/Homo_sapiens/Location/Chromosome?r=6> .
hco:6\/GRCh38
rdf:type hco:6 ;
hco:build hco:GRCh38 ;
hco:length 170805979 ;
skos:altLabel "GPC_000001298" ;
hco:insdc <http://identifiers.org/insdc/CM000668.2> ;
hco:refseq <http://identifiers.org/refseq/NC_000006.12> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr6> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh38/6> ,
<http://www.ensembl.org/Homo_sapiens/Location/Chromosome?r=6> .
hco:7
rdf:type owl:Class ;
rdfs:label "Human chromosome 7" ;
rdfs:subClassOf hco:HumanChromosome .
hco:7\/GRCh37
rdf:type hco:7 ;
hco:build hco:GRCh37 ;
hco:length 159138663 ;
skos:altLabel "GPC_000000031" ;
hco:insdc <http://identifiers.org/insdc/CM000669.1> ;
hco:refseq <http://identifiers.org/refseq/NC_000007.13> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr7> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh37/7> ,
<http://grch37.ensembl.org/Homo_sapiens/Location/Chromosome?r=7> .
hco:7\/GRCh38
rdf:type hco:7 ;
hco:build hco:GRCh38 ;
hco:length 159345973 ;
skos:altLabel "GPC_000001299" ;
hco:insdc <http://identifiers.org/insdc/CM000669.2> ;
hco:refseq <http://identifiers.org/refseq/NC_000007.14> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr7> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh38/7> ,
<http://www.ensembl.org/Homo_sapiens/Location/Chromosome?r=7> .
hco:8
rdf:type owl:Class ;
rdfs:label "Human chromosome 8" ;
rdfs:subClassOf hco:HumanChromosome .
hco:8\/GRCh37
rdf:type hco:8 ;
hco:build hco:GRCh37 ;
hco:length 146364022 ;
skos:altLabel "GPC_000000032" ;
hco:insdc <http://identifiers.org/insdc/CM000670.1> ;
hco:refseq <http://identifiers.org/refseq/NC_000008.10> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr8> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh37/8> ,
<http://grch37.ensembl.org/Homo_sapiens/Location/Chromosome?r=8> .
hco:8\/GRCh38
rdf:type hco:8 ;
hco:build hco:GRCh38 ;
hco:length 145138636 ;
skos:altLabel "GPC_000001300" ;
hco:insdc <http://identifiers.org/insdc/CM000670.2> ;
hco:refseq <http://identifiers.org/refseq/NC_000008.11> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr8> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh38/8> ,
<http://www.ensembl.org/Homo_sapiens/Location/Chromosome?r=8> .
hco:9
rdf:type owl:Class ;
rdfs:label "Human chromosome 9" ;
rdfs:subClassOf hco:HumanChromosome .
hco:9\/GRCh37
rdf:type hco:9 ;
hco:build hco:GRCh37 ;
hco:length 141213431 ;
skos:altLabel "GPC_000000033" ;
hco:insdc <http://identifiers.org/insdc/CM000671.1> ;
hco:refseq <http://identifiers.org/refseq/NC_000009.11> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr9> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh37/9> ,
<http://grch37.ensembl.org/Homo_sapiens/Location/Chromosome?r=9> .
hco:9\/GRCh38
rdf:type hco:9 ;
hco:build hco:GRCh38 ;
hco:length 138394717 ;
skos:altLabel "GPC_000001301" ;
hco:insdc <http://identifiers.org/insdc/CM000671.2> ;
hco:refseq <http://identifiers.org/refseq/NC_000009.12> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr9> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh38/9> ,
<http://www.ensembl.org/Homo_sapiens/Location/Chromosome?r=9> .
hco:10
rdf:type owl:Class ;
rdfs:label "Human chromosome 10" ;
rdfs:subClassOf hco:HumanChromosome .
hco:10\/GRCh37
rdf:type hco:10 ;
hco:build hco:GRCh37 ;
hco:length 135534747 ;
skos:altLabel "GPC_000000034" ;
hco:insdc <http://identifiers.org/insdc/CM000672.1> ;
hco:refseq <http://identifiers.org/refseq/NC_000010.10> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr10> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh37/10> ,
<http://grch37.ensembl.org/Homo_sapiens/Location/Chromosome?r=10> .
hco:10\/GRCh38
rdf:type hco:10 ;
hco:build hco:GRCh38 ;
hco:length 133797422 ;
skos:altLabel "GPC_000001302" ;
hco:insdc <http://identifiers.org/insdc/CM000672.2> ;
hco:refseq <http://identifiers.org/refseq/NC_000010.11> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr10> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh38/10> ,
<http://www.ensembl.org/Homo_sapiens/Location/Chromosome?r=10> .
hco:11
rdf:type owl:Class ;
rdfs:label "Human chromosome 11" ;
rdfs:subClassOf hco:HumanChromosome .
hco:11\/GRCh37
rdf:type hco:11 ;
hco:build hco:GRCh37 ;
hco:length 135006516 ;
skos:altLabel "GPC_000000035" ;
hco:insdc <http://identifiers.org/insdc/CM000673.1> ;
hco:refseq <http://identifiers.org/refseq/NC_000011.9> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr11> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh37/11> ,
<http://grch37.ensembl.org/Homo_sapiens/Location/Chromosome?r=11> .
hco:11\/GRCh38
rdf:type hco:11 ;
hco:build hco:GRCh38 ;
hco:length 135086622 ;
skos:altLabel "GPC_000001303" ;
hco:insdc <http://identifiers.org/insdc/CM000673.2> ;
hco:refseq <http://identifiers.org/refseq/NC_000011.10> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr11> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh38/11> ,
<http://www.ensembl.org/Homo_sapiens/Location/Chromosome?r=11> .
hco:12
rdf:type owl:Class ;
rdfs:label "Human chromosome 12" ;
rdfs:subClassOf hco:HumanChromosome .
hco:12\/GRCh37
rdf:type hco:12 ;
hco:build hco:GRCh37 ;
hco:length 133851895 ;
skos:altLabel "GPC_000000036" ;
hco:insdc <http://identifiers.org/insdc/CM000674.1> ;
hco:refseq <http://identifiers.org/refseq/NC_000012.11> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr12> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh37/12> ,
<http://grch37.ensembl.org/Homo_sapiens/Location/Chromosome?r=12> .
hco:12\/GRCh38
rdf:type hco:12 ;
hco:build hco:GRCh38 ;
hco:length 133275309 ;
skos:altLabel "GPC_000001304" ;
hco:insdc <http://identifiers.org/insdc/CM000674.2> ;
hco:refseq <http://identifiers.org/refseq/NC_000012.12> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr12> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh38/12> ,
<http://www.ensembl.org/Homo_sapiens/Location/Chromosome?r=12> .
hco:13
rdf:type owl:Class ;
rdfs:label "Human chromosome 13" ;
rdfs:subClassOf hco:HumanChromosome .
hco:13\/GRCh37
rdf:type hco:13 ;
hco:build hco:GRCh37 ;
hco:length 115169878 ;
skos:altLabel "GPC_000000037" ;
hco:insdc <http://identifiers.org/insdc/CM000675.1> ;
hco:refseq <http://identifiers.org/refseq/NC_000013.10> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr13> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh37/13> ,
<http://grch37.ensembl.org/Homo_sapiens/Location/Chromosome?r=13> .
hco:13\/GRCh38
rdf:type hco:13 ;
hco:build hco:GRCh38 ;
hco:length 114364328 ;
skos:altLabel "GPC_000001305" ;
hco:insdc <http://identifiers.org/insdc/CM000675.2> ;
hco:refseq <http://identifiers.org/refseq/NC_000013.11> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr13> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh38/13> ,
<http://www.ensembl.org/Homo_sapiens/Location/Chromosome?r=13> .
hco:14
rdf:type owl:Class ;
rdfs:label "Human chromosome 14" ;
rdfs:subClassOf hco:HumanChromosome .
hco:14\/GRCh37
rdf:type hco:14 ;
hco:build hco:GRCh37 ;
hco:length 107349540 ;
skos:altLabel "GPC_000000038" ;
hco:insdc <http://identifiers.org/insdc/CM000676.1> ;
hco:refseq <http://identifiers.org/refseq/NC_000014.8> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr14> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh37/14> ,
<http://grch37.ensembl.org/Homo_sapiens/Location/Chromosome?r=14> .
hco:14\/GRCh38
rdf:type hco:14 ;
hco:build hco:GRCh38 ;
hco:length 107043718 ;
skos:altLabel "GPC_000001306" ;
hco:insdc <http://identifiers.org/insdc/CM000676.2> ;
hco:refseq <http://identifiers.org/refseq/NC_000014.9> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr14> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh38/14> ,
<http://www.ensembl.org/Homo_sapiens/Location/Chromosome?r=14> .
hco:15
rdf:type owl:Class ;
rdfs:label "Human chromosome 15" ;
rdfs:subClassOf hco:HumanChromosome .
hco:15\/GRCh37
rdf:type hco:15 ;
hco:build hco:GRCh37 ;
hco:length 102531392 ;
skos:altLabel "GPC_000000039" ;
hco:insdc <http://identifiers.org/insdc/CM000677.1> ;
hco:refseq <http://identifiers.org/refseq/NC_000015.9> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr15> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh37/15> ,
<http://grch37.ensembl.org/Homo_sapiens/Location/Chromosome?r=15> .
hco:15\/GRCh38
rdf:type hco:15 ;
hco:build hco:GRCh38 ;
hco:length 101991189 ;
skos:altLabel "GPC_000001307" ;
hco:insdc <http://identifiers.org/insdc/CM000677.2> ;
hco:refseq <http://identifiers.org/refseq/NC_000015.10> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr15> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh38/15> ,
<http://www.ensembl.org/Homo_sapiens/Location/Chromosome?r=15> .
hco:16
rdf:type owl:Class ;
rdfs:label "Human chromosome 16" ;
rdfs:subClassOf hco:HumanChromosome .
hco:16\/GRCh37
rdf:type hco:16 ;
hco:build hco:GRCh37 ;
hco:length 90354753 ;
skos:altLabel "GPC_000000040" ;
hco:insdc <http://identifiers.org/insdc/CM000678.1> ;
hco:refseq <http://identifiers.org/refseq/NC_000016.9> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr16> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh37/16> ,
<http://grch37.ensembl.org/Homo_sapiens/Location/Chromosome?r=16> .
hco:16\/GRCh38
rdf:type hco:16 ;
hco:build hco:GRCh38 ;
hco:length 90338345 ;
skos:altLabel "GPC_000001308" ;
hco:insdc <http://identifiers.org/insdc/CM000678.2> ;
hco:refseq <http://identifiers.org/refseq/NC_000016.10> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr16> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh38/16> ,
<http://www.ensembl.org/Homo_sapiens/Location/Chromosome?r=16> .
hco:17
rdf:type owl:Class ;
rdfs:label "Human chromosome 17" ;
rdfs:subClassOf hco:HumanChromosome .
hco:17\/GRCh37
rdf:type hco:17 ;
hco:build hco:GRCh37 ;
hco:length 81195210 ;
skos:altLabel "GPC_000000041" ;
hco:insdc <http://identifiers.org/insdc/CM000679.1> ;
hco:refseq <http://identifiers.org/refseq/NC_000017.10> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr17> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh37/17> ,
<http://grch37.ensembl.org/Homo_sapiens/Location/Chromosome?r=17> .
hco:17\/GRCh38
rdf:type hco:17 ;
hco:build hco:GRCh38 ;
hco:length 83257441 ;
skos:altLabel "GPC_000001309" ;
hco:insdc <http://identifiers.org/insdc/CM000679.2> ;
hco:refseq <http://identifiers.org/refseq/NC_000017.11> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr17> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh38/17> ,
<http://www.ensembl.org/Homo_sapiens/Location/Chromosome?r=17> .
hco:18
rdf:type owl:Class ;
rdfs:label "Human chromosome 18" ;
rdfs:subClassOf hco:HumanChromosome .
hco:18\/GRCh37
rdf:type hco:18 ;
hco:build hco:GRCh37 ;
hco:length 78077248 ;
skos:altLabel "GPC_000000042" ;
hco:insdc <http://identifiers.org/insdc/CM000680.1> ;
hco:refseq <http://identifiers.org/refseq/NC_000018.9> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr18> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh37/18> ,
<http://grch37.ensembl.org/Homo_sapiens/Location/Chromosome?r=18> .
hco:18\/GRCh38
rdf:type hco:18 ;
hco:build hco:GRCh38 ;
hco:length 80373285 ;
skos:altLabel "GPC_000001310" ;
hco:insdc <http://identifiers.org/insdc/CM000680.2> ;
hco:refseq <http://identifiers.org/refseq/NC_000018.10> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr18> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh38/18> ,
<http://www.ensembl.org/Homo_sapiens/Location/Chromosome?r=18> .
hco:19
rdf:type owl:Class ;
rdfs:label "Human chromosome 19" ;
rdfs:subClassOf hco:HumanChromosome .
hco:19\/GRCh37
rdf:type hco:19 ;
hco:build hco:GRCh37 ;
hco:length 59128983 ;
skos:altLabel "GPC_000000043" ;
hco:insdc <http://identifiers.org/insdc/CM000681.1> ;
hco:refseq <http://identifiers.org/refseq/NC_000019.9> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr19> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh37/19> ,
<http://grch37.ensembl.org/Homo_sapiens/Location/Chromosome?r=19> .
hco:19\/GRCh38
rdf:type hco:19 ;
hco:build hco:GRCh38 ;
hco:length 58617616 ;
skos:altLabel "GPC_000001311" ;
hco:insdc <http://identifiers.org/insdc/CM000681.2> ;
hco:refseq <http://identifiers.org/refseq/NC_000019.10> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chg38> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh38/19> ,
<http://www.ensembl.org/Homo_sapiens/Location/Chromosome?r=19> .
hco:20
rdf:type owl:Class ;
rdfs:label "Human chromosome 20" ;
rdfs:subClassOf hco:HumanChromosome .
hco:20\/GRCh37
rdf:type hco:20 ;
hco:build hco:GRCh37 ;
hco:length 63025520 ;
skos:altLabel "GPC_000000044" ;
hco:insdc <http://identifiers.org/insdc/CM000682.1> ;
hco:refseq <http://identifiers.org/refseq/NC_000020.10> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr20> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh37/20> ,
<http://grch37.ensembl.org/Homo_sapiens/Location/Chromosome?r=20> .
hco:20\/GRCh38
rdf:type hco:20 ;
hco:build hco:GRCh38 ;
hco:length 64444167 ;
skos:altLabel "GPC_000001312" ;
hco:insdc <http://identifiers.org/insdc/CM000682.2> ;
hco:refseq <http://identifiers.org/refseq/NC_000020.11> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr20> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh38/20> ,
<http://www.ensembl.org/Homo_sapiens/Location/Chromosome?r=20> .
hco:21
rdf:type owl:Class ;
rdfs:label "Human chromosome 21" ;
rdfs:subClassOf hco:HumanChromosome .
hco:21\/GRCh37
rdf:type hco:21 ;
hco:build hco:GRCh37 ;
hco:length 48129895 ;
skos:altLabel "GPC_000000045" ;
hco:insdc <http://identifiers.org/insdc/CM000683.1> ;
hco:refseq <http://identifiers.org/refseq/NC_000021.8> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr21> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh37/21> ,
<http://grch37.ensembl.org/Homo_sapiens/Location/Chromosome?r=21> .
hco:21\/GRCh38
rdf:type hco:21 ;
hco:build hco:GRCh38 ;
hco:length 46709983 ;
skos:altLabel "GPC_000001313" ;
hco:insdc <http://identifiers.org/insdc/CM000683.2> ;
hco:refseq <http://identifiers.org/refseq/NC_000021.9> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr21> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh38/21> ,
<http://www.ensembl.org/Homo_sapiens/Location/Chromosome?r=21> .
hco:22
rdf:type owl:Class ;
rdfs:label "Human chromosome 22" ;
rdfs:subClassOf hco:HumanChromosome .
hco:22\/GRCh37
rdf:type hco:22 ;
hco:build hco:GRCh37 ;
hco:length 51304566 ;
skos:altLabel "GPC_000000046" ;
hco:insdc <http://identifiers.org/insdc/CM000684.1> ;
hco:refseq <http://identifiers.org/refseq/NC_000022.10> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr22> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh37/22> ,
<http://grch37.ensembl.org/Homo_sapiens/Location/Chromosome?r=22> .
hco:22\/GRCh38
rdf:type hco:22 ;
hco:build hco:GRCh38 ;
hco:length 50818468 ;
skos:altLabel "GPC_000001314" ;
hco:insdc <http://identifiers.org/insdc/CM000684.2> ;
hco:refseq <http://identifiers.org/refseq/NC_000022.11> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chr22> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh38/22> ,
<http://www.ensembl.org/Homo_sapiens/Location/Chromosome?r=22> .
hco:X
rdf:type owl:Class ;
rdfs:label "Human chromosome X" ;
rdfs:subClassOf hco:HumanChromosome .
hco:X\/GRCh37
rdf:type hco:X ;
hco:build hco:GRCh37 ;
hco:length 155270560 ;
skos:altLabel "GPC_000000047" ;
hco:insdc <http://identifiers.org/insdc/CM000685.1> ;
hco:refseq <http://identifiers.org/refseq/NC_000023.10> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chrX> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh37/X> ,
<http://grch37.ensembl.org/Homo_sapiens/Location/Chromosome?r=X> .
hco:X\/GRCh38
rdf:type hco:X ;
hco:build hco:GRCh38 ;
hco:length 156040895 ;
skos:altLabel "GPC_000001315" ;
hco:insdc <http://identifiers.org/insdc/CM000685.2> ;
hco:refseq <http://identifiers.org/refseq/NC_000023.11> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrX> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh38/X> ,
<http://www.ensembl.org/Homo_sapiens/Location/Chromosome?r=X> .
hco:Y
rdf:type owl:Class ;
rdfs:label "Human chromosome Y" ;
rdfs:subClassOf hco:HumanChromosome .
hco:Y\/GRCh37
rdf:type hco:Y ;
hco:build hco:GRCh37 ;
hco:length 59373566 ;
skos:altLabel "GPC_000000048" ;
hco:insdc <http://identifiers.org/insdc/CM000686.1> ;
hco:refseq <http://identifiers.org/refseq/NC_000024.9> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chrY> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh37/Y> ,
<http://grch37.ensembl.org/Homo_sapiens/Location/Chromosome?r=Y> .
hco:Y\/GRCh38
rdf:type hco:Y ;
hco:build hco:GRCh38 ;
hco:length 57227415 ;
skos:altLabel "GPC_000001316" ;
hco:insdc <http://identifiers.org/insdc/CM000686.2> ;
hco:refseq <http://identifiers.org/refseq/NC_000024.10> ;
hco:ucsc <http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=chrY> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh38/Y> ,
<http://www.ensembl.org/Homo_sapiens/Location/Chromosome?r=Y> .
hco:MT
rdf:type owl:Class ;
rdfs:label "Human mitochondrion genome" ;
rdfs:subClassOf hco:HumanChromosome .
hco:MT\/GRCh37
rdf:type hco:MT ;
hco:length 16569 ;
skos:altLabel "AC_000021" ;
hco:insdc <http://identifiers.org/insdc/J01415.2> ;
hco:refseq <http://identifiers.org/refseq/NC_012920.1> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh37/MT> .
hco:MT\/GRCh38
rdf:type hco:MT ;
hco:length 16569 ;
skos:altLabel "AC_000021" ;
hco:insdc <http://identifiers.org/insdc/J01415.2> ;
hco:refseq <http://identifiers.org/refseq/NC_012920.1> ;
hco:ensembl <http://rdf.ebi.ac.uk/resource/ensembl/homo_sapiens/GRCh38/MT> .
# Human genome build classes and instances
hco:GRCh37
rdf:type owl:Class ;
rdfs:label "GRCh37" ;
skos:definition "Genome Reference Consortium Human Build 37" ;
skos:altLabel "hg19" ;
rdfs:subClassOf hco:GenomeBuild .
hco:GRCh37.p0
rdfs:label "GRCh37.p0" ;
skos:definition "Genome Reference Consortium Human Build 37" ;
hco:length 3137144693;
dct:date "2009-02-27"^^xsd:date ;
rdfs:seeAlso <https://www.ncbi.nlm.nih.gov/assembly/GCA_000001405.1> ;
rdfs:seeAlso <https://www.ncbi.nlm.nih.gov/assembly/GCF_000001405.13> ;
rdf:type hco:GRCh37 .
hco:GRCh37.p13
rdfs:label "GRCh37.p13" ;
skos:definition "Genome Reference Consortium Human Build 37 patch release 13" ;
hco:length 3234834689 ;
dct:date "2013-06-28"^^xsd:date ;
rdfs:seeAlso <https://www.ncbi.nlm.nih.gov/assembly/GCA_000001405.14> ;
rdfs:seeAlso <https://www.ncbi.nlm.nih.gov/assembly/GCF_000001405.25> ;
rdf:type hco:GRCh37 .
hco:GRCh38
rdf:type owl:Class ;
rdfs:label "GRCh38" ;
skos:definition "Genome Reference Consortium Human Build 38" ;
skos:altLabel "hg38" ;
rdfs:subClassOf hco:GenomeBuild .
hco:GRCh38.p0
rdfs:label "GRCh38.p0" ;
skos:definition "Genome Reference Consortium Human Build 38" ;
skos:altLabel "hg38" ;
hco:length 3209286105 ;
dct:date "2013-12-17"^^xsd:date ;
rdfs:seeAlso <https://www.ncbi.nlm.nih.gov/assembly/GCA_000001405.15> ;
rdfs:seeAlso <https://www.ncbi.nlm.nih.gov/assembly/GCF_000001405.26> ;
rdf:type hco:GenomeBuild .
hco:GRCh38.p7 # Previous RefSeq version
rdfs:label "GRCh38.p7" ;
skos:definition "Genome Reference Consortium Human Build 38 patch release 7" ;
skos:altLabel "hg38" ;
hco:length 3232546710 ;
dct:date "2016-03-21"^^xsd:date ;
rdfs:seeAlso <https://www.ncbi.nlm.nih.gov/assembly/GCA_000001405.22> ;
rdfs:seeAlso <https://www.ncbi.nlm.nih.gov/assembly/GCF_000001405.33> ;
rdf:type hco:GenomeBuild .
hco:GRCh38.p10 # Previous Ensembl version
rdfs:label "GRCh38.p10" ;
skos:definition "Genome Reference Consortium Human Build 38 patch release 10" ;
skos:altLabel "hg38" ;
hco:length 3241953429 ;
dct:date "2017-01-06"^^xsd:date ;
rdfs:seeAlso <https://www.ncbi.nlm.nih.gov/assembly/GCA_000001405.25> ;
rdfs:seeAlso <https://www.ncbi.nlm.nih.gov/assembly/GCF_000001405.36> ;
rdf:type hco:GenomeBuild .
hco:GRCh38.p12 # Current version
rdfs:label "GRCh38.p12" ;
skos:definition "Genome Reference Consortium Human Build 38 patch release 12" ;
skos:altLabel "hg38" ;
hco:length 3257319537 ;
dct:date "2017-12-21"^^xsd:date ;
rdfs:seeAlso <https://www.ncbi.nlm.nih.gov/assembly/GCA_000001405.27> ;
rdfs:seeAlso <https://www.ncbi.nlm.nih.gov/assembly/GCF_000001405.38> ;
rdf:type hco:GenomeBuild .
# Cytoband classes and instances
hco:Acen
rdf:type hco:CytobandType ;
rdfs:label "acen" ;
skos:definition "Centromeric region" .
hco:Gneg
rdf:type hco:CytobandType ;
rdfs:label "gneg" ;
skos:definition "Giemsa negative band" .
hco:Gpos100
rdf:type hco:CytobandType ;
rdfs:label "gpos100" ;
skos:definition "Giemsa positive band, the darkest stain level" .
hco:Gpos25
rdf:type hco:CytobandType ;
rdfs:label "gpos25" ;
skos:definition "Giemsa positive band, the lightest stain level" .
hco:Gpos50
rdf:type hco:CytobandType ;
rdfs:label "gpos50" ;
skos:definition "Giemsa positive band, the second lightest stain level" .
hco:Gpos75
rdf:type hco:CytobandType ;
rdfs:label "gpos75" ;
skos:definition "Giemsa positive band, the second darkest stain level" .
hco:Gvar
rdf:type hco:CytobandType ;
rdfs:label "gvar" ;
rdfs:definition "Variable length heterochromatic region." .
hco:Stalk
rdf:type hco:CytobandType ;
rdfs:label "stalk" ;
skos:definition "Short arm of the acrocentric chromosomes." .
hco:1p36.33
rdf:type owl:Class ;
rdfs:label "1p36.33" ;
rdfs:subClassOf hco:Cytoband .
hco:1p36.33\/GRCh37
rdf:type hco:1p36.33 ;
hco:build hco:GRCh37 ;
hco:bandtype hco:Gneg ;
faldo:location [
rdf:type faldo:Region ;
faldo:begin [
rdf:type faldo:BothStrandsPosition ;
faldo:position 1 ;
faldo:reference hco:1\/GRCh37
] ;
faldo:end [
rdf:type faldo:BothStrandsPosition ;
faldo:position 2300000 ;
faldo:reference hco:1\/GRCh37
]
] .
hco:1p36.33\/GRCh38
rdf:type hco:1p36.33 ;
hco:build hco:GRCh38 ;
hco:bandtype hco:Gneg ;
faldo:location [
rdf:type faldo:Region ;
faldo:begin [
rdf:type faldo:BothStrandsPosition ;
faldo:position 1 ;
faldo:reference hco:1\/GRCh38
] ;
faldo:end [
rdf:type faldo:BothStrandsPosition ;
faldo:position 2300000 ;
faldo:reference hco:1\/GRCh38
]
] .
hco:1p36.32
rdf:type owl:Class ;
rdfs:label "1p36.32" ;
rdfs:subClassOf hco:Cytoband .
hco:1p36.32\/GRCh37
rdf:type hco:1p36.32 ;
hco:build hco:GRCh37 ;
hco:bandtype hco:Gpos25 ;
faldo:location [
rdf:type faldo:Region ;
faldo:begin [
rdf:type faldo:BothStrandsPosition ;
faldo:position 2300001 ;
faldo:reference hco:1\/GRCh37
] ;
faldo:end [
rdf:type faldo:BothStrandsPosition ;
faldo:position 5400000 ;
faldo:reference hco:1\/GRCh37
]
] .
hco:1p36.32\/GRCh38
rdf:type hco:1p36.32 ;
hco:build hco:GRCh38 ;
hco:bandtype hco:Gpos25 ;
faldo:location [
rdf:type faldo:Region ;
faldo:begin [
rdf:type faldo:BothStrandsPosition ;
faldo:position 2300001 ;
faldo:reference hco:1\/GRCh38
] ;
faldo:end [
rdf:type faldo:BothStrandsPosition ;
faldo:position 5300000 ;
faldo:reference hco:1\/GRCh38
]
] .
hco:1p36.31
rdf:type owl:Class ;
rdfs:label "1p36.31" ;
rdfs:subClassOf hco:Cytoband .
hco:1p36.31\/GRCh37
rdf:type hco:1p36.31 ;
hco:build hco:GRCh37 ;
hco:bandtype hco:Gneg ;
faldo:location [
rdf:type faldo:Region ;
faldo:begin [
rdf:type faldo:BothStrandsPosition ;
faldo:position 5400001 ;
faldo:reference hco:1\/GRCh37
] ;
faldo:end [
rdf:type faldo:BothStrandsPosition ;
faldo:position 7200000 ;
faldo:reference hco:1\/GRCh37
]
] .
hco:1p36.31\/GRCh38
rdf:type hco:1p36.31 ;
hco:build hco:GRCh38 ;
hco:bandtype hco:Gneg ;
faldo:location [
rdf:type faldo:Region ;
faldo:begin [
rdf:type faldo:BothStrandsPosition ;
faldo:position 5300001 ;
faldo:reference hco:1\/GRCh38
] ;
faldo:end [
rdf:type faldo:BothStrandsPosition ;
faldo:position 7100000 ;
faldo:reference hco:1\/GRCh38
]
] .
hco:1p36.23
rdf:type owl:Class ;
rdfs:label "1p36.23" ;
rdfs:subClassOf hco:Cytoband .