mutation.conf

{
"base":	"<http://purl.jp/bio/10/med2rdf/tcga/>",
"prefix":[
		{
			"name":"rdfs",
			"uri":"<http://www.w3.org/2000/01/rdf-schema#>"
		},
		{
			"name":"dcterms",
			"uri":"<http://dublincore.org/documents/dcmi-terms/>"
		},
		{
			"name":"egig",
			"uri":"<http://rdf.ebi.ac.uk/resource/ensembl.gene/>"
		},
		{
			"name":"m2r",
			"uri":"<http://purl.jp/bio/10/med2rdf/>"
		},
		{
			"name":"hco",
			"uri":"<http://identifiers.org/hco/>"
		},
		{
			"name":"faldo",
			"uri":"<http://biohackathon.org/resource/faldo#>"
		},
		{
			"name":"icgc",
			"uri":"<http://icgc.link/vocab/>"
		},
		{
			"name":"tcga-det",
			"uri":"<http://purl.jp/bio/10/tcga/detection/>"
		},
		{
			"name":"tcga-var",
			"uri":"<http://purl.jp/bio/10/tcga/variant/>"
		},
		{
			"name":"tcga-case",
			"uri":"<http://purl.jp/bio/10/tcga/case/>"
		},
		{
			"name":"tcga-pos",
			"uri":"<http://purl.jp/bio/10/tcga/position/>"
		}
	],
"subject":[
		{
			"prefix":"tcga-det",
			"labels":["Tumor_Sample_Barcode","NCBI_Build","Chromosome","Start_Position","End_Position","Reference_Allele","Tumor_Seq_Allele2"],
			"class":"m2r:Detection",
			"property":[
				{
					"prefix":"dcterms",
					"text":"identifier",
					"object":[
						{
							"literals":["Tumor_Sample_Barcode","NCBI_Build","Chromosome","Start_Position","End_Position","Reference_Allele","Tumor_Seq_Allele2"]
						}
					]
				},
				{
					"prefix":"m2r",
					"text":"variation",
					"object":[
						{
							"prefix":"tcga-var",
							"labels":["NCBI_Build","Chromosome","Start_Position","End_Position","Reference_Allele","Tumor_Seq_Allele2"]
		
						}
					]
				},
				{
					"prefix":"m2r",
					"text":"case",
					"object":[
						{
							"prefix":"tcga-case",
							"label":"Case_Id"
						}
					]
				},
				{
					"prefix":"icgc",
					"text":"platform",
					"object":[
						{
							"literal":"Sequencer"
						}
					]
				}
				]
		},
		{
			"prefix":"tcga-var",
			"labels":["NCBI_Build","Chromosome","Start_Position","End_Position","Reference_Allele","Tumor_Seq_Allele2"]
		,
			"class":"m2r:Variation",
			"property":[
				{
					"prefix":"dcterms",
					"text":"identifier",
					"object":[
						{
							"literals":["NCBI_Build","Chromosome","Start_Position","End_Position","Reference_Allele","Tumor_Seq_Allele2"]
		
						}
						]
				},
				{
					"prefix":"faldo",
					"text":"location",
					"object":[
						{
							"prefix":"tcga-pos",
							"labels":["NCBI_Build","Chromosome","Start_Position","End_Position"]
						}
						]
				},
				{
					"prefix":"m2r",
					"text":"reference_allele",
					"object":[
						{
							"literal":"Reference_Allele"
						}
						]
				},
				{
					"prefix":"m2r",
					"text":"alternative_allele",
					"object":[
						{
							"literal":"Tumor_Seq_Allele2"
						}
						]
				},
				{
					"prefix":"m2r",
					"text":"variant_type",
					"object":[
						{
							"literal":"Variant_Type"
						}
						]
				},
				{
					"prefix":"m2r",
					"text":"variant_class",
					"object":[
						{
							"literal":"Variant_Classification"
						}
						]
				},
				{
					"prefix":"m2r",
					"text":"gene",
					"object":[
						{
							"text":"gene",
							"label":"Hugo_Symbol"
						}
						]
				}
			]
		},
		{
			"prefix":"tcga-pos",
			"labels":["NCBI_Build","Chromosome","Start_Position","End_Position"],
			"class":"faldo:Region",
			"property":[
				{
					"prefix":"faldo",
					"text":"begin",
					"object":[
						{
							"prefix":"tcga-pos",
							"labels":["NCBI_Build","Chromosome","Start_Position"]
						}
					]
				},
				{
					"prefix":"faldo",
					"text":"end",
					"object":[
						{
							"prefix":"tcga-pos",
							"labels":["NCBI_Build","Chromosome","End_Position"]
						}
						]
				}
			]
		},
		{
			"prefix":"tcga-pos",
			"labels":["NCBI_Build","Chromosome","Start_Position"],
			"classes":["faldo:ExactPosition","faldo:ForwardStrandPosition"],
			"property":[
				{
					"prefix":"faldo",
					"text":"position",
					"object":[
						{
							"integer":"Start_Position"
						}
					]
				},
				{
					"prefix":"hco",
					"text":"reference",
					"object":[
						{
							"label":"Chr_Build"
						}
						]
				}
			]
		},
		{
			"prefix":"tcga-pos",
			"labels":["NCBI_Build","Chromosome","End_Position"],
			"classes":["faldo:ExactPosition","faldo:ForwardStrandPosition"],
			"property":[
				{
					"prefix":"faldo",
					"text":"position",
					"object":[
						{
							"integer":"End_Position"
						}
					]
				},
				{
					"prefix":"hco",
					"text":"reference",
					"object":[
						{
							"label":"Chr_Build"
						}
						]
				}
			]
		},
		{
			"text":"gene",
			"label":"Hugo_Symbol",
			"class":"m2r:Gene",
			"property":[
				{
					"prefix":"rdfs",
					"text":"label",
					"object":[
						{
							"literal":"Hugo_Symbol"
						}
					]
				},
				{
					"text":"ensembl",
					"object":[
						{
							"prefix":"egig",
							"label":"Gene"
						}
						]
				}
			]
		}
	]
}