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Issue with generateTypicalParamTable() and pd.concat function #1
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Hi there, Still really need a solution for this. Get the feeling this repo isn't being maintained anymore? |
Faced similar issue, your information is helpful. Is there any alternative git for this process? |
Hi there, |
Hi there, I have similar problems with this line of codes about parameter calculation.
the errors were like
It seems that the problem is about pandas module and my pandas version is 0.19.2. So can anyone tell me your package versions so that I could use the correct one. Thanks. |
Make sure you have ViennaRNA 2.2.5 installed. When this line runs
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Hi there,
While trying to run the pipeline outlined in Library_design_walkthrough.ipynb, I ran into an error at line [9]
paramTable_trainingGuides = generateTypicalParamTable(libraryTable_training,sgInfoTable_training, tssTable, p1p2Table, genomeDict, bwhandleDict)
The error I got was
AssertionError: Cannot concat indices that do not have the same number of levels
coming from the pd.concat function.I went manually, line by line through the code for generateTypicalParamTable() and eventually found the problem was with doubleBaseTable. It seems that this table is created with a MultiIndex for columns, and so when you try concat it to other tables which all have single level indices for columns you get this error. Is there something I am doing wrong?
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