got an error: in creating graph from extracted entitity(create_base_entity_graph)

[NavaneethaCSR]

Logging enabled at C:\Users\LENOVO\GRAPHRAG\ragtest\output\indexing-engine.log
C:\Users\LENOVO\GRAPHRAG\venv\Lib\site-packages\numpy\core\fromnumeric.py:59: FutureWarning: 'DataFrame.swapaxes' is deprecated and will be removed in a future
version. Please use 'DataFrame.transpose' instead.
return bound(*args, **kwds)
🚀 create_base_text_units
id chunk chunk_id document_ids n_tokens
0 3bdf8c193f4b72504e0c63696416bb82 Unlike Next, which we'd eaten at the previous ... 3bdf8c193f4b72504e0c63696416bb82 [1] 1066
1 886c5b1b44c4d7352adc614a9ecab771 Probably one of the best meals I've had ever. ... 886c5b1b44c4d7352adc614a9ecab771 [2] 76
2 d5c64a9a59107a194272c3346c74c9bd Unlike Next, which we'd eaten at the previous ... d5c64a9a59107a194272c3346c74c9bd [3] 1066
3 46b47fb2587c0f82757c419510b670ad Probably one of the best meals I've had ever. ... 46b47fb2587c0f82757c419510b670ad [4] 76
4 59cb342f30f3ec348ebab4825fab7386 Service was impeccable. Experience and present... 59cb342f30f3ec348ebab4825fab7386 [5] 54
.. ... ... ... ... ...
224 533225c99a20936c412a80ae44ec721d Pros: It's Hot Doug's. I think that says it al... 533225c99a20936c412a80ae44ec721d [2504] 106
225 18c33be7b4b5ba8046fde71ead0d9c89 This place is incredible. Definitely worth the... 18c33be7b4b5ba8046fde71ead0d9c89 [2505] 109
226 a5cb98f4b1452523169ed305431dc1ec 2 Words - Ahhh mazing Although the wait is rid... a5cb98f4b1452523169ed305431dc1ec [2506] 168
227 ce7c33a01c30219dab23baf3768a42c2 I had the game of the week, bison and also had... ce7c33a01c30219dab23baf3768a42c2 [2507] 38
228 2567e753624adb1e855df85066e73c6d The duck fat fries are EXCELLENT! This place a... 2567e753624adb1e855df85066e73c6d [2508] 36

[2522 rows x 5 columns]
🚀 create_base_extracted_entities
entity_graph
0 <graphml xmlns="http://graphml.graphdrawing.or...
🚀 create_summarized_entities
entity_graph
0 <graphml xmlns="http://graphml.graphdrawing.or...
❌ create_base_entity_graph
None
⠏ GraphRAG Indexer
├── Loading Input (InputFileType.csv) - 1 files loaded (0 filtered) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 0:00:00 0:00:00
├── create_base_text_units
├── create_base_extracted_entities
├── create_summarized_entities
└── create_base_entity_graph
❌ Errors occurred during the pipeline run, see logs for more details.

logs.json:

"type": "error",
"data": "Error executing verb \"cluster_graph\" in create_base_entity_graph: Columns must be same length as key",
"stack": "Traceback (most recent call last):\n  File \"C:\\Users\\LENOVO\\GRAPHRAG\\venv\\Lib\\site-packages\\datashaper\\workflow\\workflow.py\", line 410, in _execute_verb\n    result = node.verb.func(**verb_args)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^\n  File \"C:\\Users\\LENOVO\\GRAPHRAG\\venv\\Lib\\site-packages\\graphrag\\index\\verbs\\graph\\clustering\\cluster_graph.py\", line 106, in cluster_graph\n    output_df[[level_to, to]] = pd.DataFrame(\n    ~~~~~~~~~^^^^^^^^^^^^^^^^\n  File \"C:\\Users\\LENOVO\\GRAPHRAG\\venv\\Lib\\site-packages\\pandas\\core\\frame.py\", line 4299, in __setitem__\n    self._setitem_array(key, value)\n  File \"C:\\Users\\LENOVO\\GRAPHRAG\\venv\\Lib\\site-packages\\pandas\\core\\frame.py\", line 4341, in _setitem_array\n    check_key_length(self.columns, key, value)\n  File \"C:\\Users\\LENOVO\\GRAPHRAG\\venv\\Lib\\site-packages\\pandas\\core\\indexers\\utils.py\", line 390, in check_key_length\n    raise ValueError(\"Columns must be same length as key\")\nValueError: Columns must be same length as key\n",
"source": "Columns must be same length as key",
"details": null

}
{
"type": "error",
"data": "Error running pipeline!",
"stack": "Traceback (most recent call last):\n File "C:\Users\LENOVO\GRAPHRAG\venv\Lib\site-packages\graphrag\index\run\run.py", line 227, in run_pipeline\n result = await _process_workflow(\n ^^^^^^^^^^^^^^^^^^^^^^^^\n File "C:\Users\LENOVO\GRAPHRAG\venv\Lib\site-packages\graphrag\index\run\workflow.py", line 91, in _process_workflow\n result = await workflow.run(context, callbacks)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n File "C:\Users\LENOVO\GRAPHRAG\venv\Lib\site-packages\datashaper\workflow\workflow.py", line 369, in run\n timing = await self._execute_verb(node, context, callbacks)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n File "C:\Users\LENOVO\GRAPHRAG\venv\Lib\site-packages\datashaper\workflow\workflow.py", line 410, in _execute_verb\n result = node.verb.func(**verb_args)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^\n File "C:\Users\LENOVO\GRAPHRAG\venv\Lib\site-packages\graphrag\index\verbs\graph\clustering\cluster_graph.py", line 106, in cluster_graph\n output_df[[level_to, to]] = pd.DataFrame(\n ~~~~~~~~~^^^^^^^^^^^^^^^^\n File "C:\Users\LENOVO\GRAPHRAG\venv\Lib\site-packages\pandas\core\frame.py", line 4299, in setitem\n self._setitem_array(key, value)\n File "C:\Users\LENOVO\GRAPHRAG\venv\Lib\site-packages\pandas\core\frame.py", line 4341, in _setitem_array\n check_key_length(self.columns, key, value)\n File "C:\Users\LENOVO\GRAPHRAG\venv\Lib\site-packages\pandas\core\indexers\utils.py", line 390, in check_key_length\n raise ValueError("Columns must be same length as key")\nValueError: Columns must be same length as key\n",
"source": "Columns must be same length as key",
"details": null
}

can some one explain the error and resolve it

[NathanAP]

I'm also getting this but its not in every single attempt to create the data.

Upvoting for visibility.

[alexfrocha]

me too