diff --git a/LICENSE.html b/LICENSE.html index 03b34bc..cb45928 100644 --- a/LICENSE.html +++ b/LICENSE.html @@ -28,7 +28,7 @@

MIT License

- Source: LICENSE.md + Source: LICENSE.md
diff --git a/authors.html b/authors.html index 1fb9b5f..b2e7793 100644 --- a/authors.html +++ b/authors.html @@ -41,7 +41,7 @@

Authors

Citation

-

Source: DESCRIPTION

+

Source: DESCRIPTION

Heming M (2024). CSFAtlasTools: Helper functions for the CSF Immune Atlas analysis. diff --git a/pkgdown.yml b/pkgdown.yml index 9de6496..a5d8ef2 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -2,7 +2,7 @@ pandoc: 3.1.11 pkgdown: 2.1.1 pkgdown_sha: ~ articles: {} -last_built: 2024-10-26T10:48Z +last_built: 2024-10-26T12:21Z urls: reference: https://mihem.github.io/CSFAtlasTools/reference article: https://mihem.github.io/CSFAtlasTools/articles diff --git a/reference/abundanceCategoryPlot.html b/reference/abundanceCategoryPlot.html index 91853ae..b8e4431 100644 --- a/reference/abundanceCategoryPlot.html +++ b/reference/abundanceCategoryPlot.html @@ -28,7 +28,7 @@

the abundance of each gene in a cluster as a barplot.

- Source: R/visualization.R + Source: R/visualization.R
abundanceCategoryPlot.Rd
diff --git a/reference/boxplot_cluster_manual.html b/reference/boxplot_cluster_manual.html index 8bd2f0e..cbc23a2 100644 --- a/reference/boxplot_cluster_manual.html +++ b/reference/boxplot_cluster_manual.html @@ -28,7 +28,7 @@

Boxplot Cluster Manual

- Source: R/visualization.R + Source: R/visualization.R
boxplot_cluster_manual.Rd
diff --git a/reference/compBoxplot.html b/reference/compBoxplot.html index 6a507cc..34cbd6e 100644 --- a/reference/compBoxplot.html +++ b/reference/compBoxplot.html @@ -28,7 +28,7 @@

Compare via boxplots

- Source: R/visualization.R + Source: R/visualization.R
compBoxplot.Rd
diff --git a/reference/compSex.html b/reference/compSex.html index c7c3043..f0afdc5 100644 --- a/reference/compSex.html +++ b/reference/compSex.html @@ -28,7 +28,7 @@

Compare Variables Between Sex

- Source: R/visualization.R + Source: R/visualization.R
compSex.Rd
diff --git a/reference/corrPlot.html b/reference/corrPlot.html index b0e60f9..0a100c7 100644 --- a/reference/corrPlot.html +++ b/reference/corrPlot.html @@ -28,7 +28,7 @@

Individual correlation plots of variables

- Source: R/visualization.R + Source: R/visualization.R
corrPlot.Rd
diff --git a/reference/count_category.html b/reference/count_category.html index 315e059..ec9c3fd 100644 --- a/reference/count_category.html +++ b/reference/count_category.html @@ -28,7 +28,7 @@

Count categories

- Source: R/utils.R + Source: R/utils.R
count_category.Rd
diff --git a/reference/date_distance_fun.html b/reference/date_distance_fun.html index cf4a1d7..f00fe22 100644 --- a/reference/date_distance_fun.html +++ b/reference/date_distance_fun.html @@ -28,7 +28,7 @@

Calculate the distance between two dates

- Source: R/utils.R + Source: R/utils.R
date_distance_fun.Rd
diff --git a/reference/lm_age.html b/reference/lm_age.html index 6abf809..6a137ab 100644 --- a/reference/lm_age.html +++ b/reference/lm_age.html @@ -30,7 +30,7 @@

Linear model for age

- Source: R/utils.R + Source: R/utils.R
lm_age.Rd
diff --git a/reference/plotConfMat.html b/reference/plotConfMat.html index c2f3583..1b545a5 100644 --- a/reference/plotConfMat.html +++ b/reference/plotConfMat.html @@ -30,7 +30,7 @@

Plot confusion matrix

- Source: R/visualization.R + Source: R/visualization.R
plotConfMat.Rd
diff --git a/reference/scale_this.html b/reference/scale_this.html index 9903ac7..6fcd368 100644 --- a/reference/scale_this.html +++ b/reference/scale_this.html @@ -28,7 +28,7 @@

Scale a variable

- Source: R/utils.R + Source: R/utils.R
scale_this.Rd
diff --git a/reference/stabilityBlood.html b/reference/stabilityBlood.html index 7df6d97..977d28b 100644 --- a/reference/stabilityBlood.html +++ b/reference/stabilityBlood.html @@ -30,7 +30,7 @@

Stability metric for Blood

- Source: R/visualization.R + Source: R/visualization.R
stabilityBlood.Rd
diff --git a/reference/stabilityCSF.html b/reference/stabilityCSF.html index bc17239..438dd3e 100644 --- a/reference/stabilityCSF.html +++ b/reference/stabilityCSF.html @@ -30,7 +30,7 @@

Stability metric for CSF

- Source: R/visualization.R + Source: R/visualization.R
stabilityCSF.Rd
diff --git a/reference/timePlot.html b/reference/timePlot.html index 08745e5..eaaf40f 100644 --- a/reference/timePlot.html +++ b/reference/timePlot.html @@ -28,7 +28,7 @@

Time Plot

- Source: R/visualization.R + Source: R/visualization.R
timePlot.Rd
diff --git a/reference/wilcox_akp_test.html b/reference/wilcox_akp_test.html index 7502277..8e8fcda 100644 --- a/reference/wilcox_akp_test.html +++ b/reference/wilcox_akp_test.html @@ -28,7 +28,7 @@

Wilcoxon Test with AKP Effect Size (robust version of Cohen's d)

- Source: R/utils.R + Source: R/utils.R
wilcox_akp_test.Rd
@@ -64,6 +64,11 @@

Examples value = c(10.1, 20.3, 30.5, 40.7, 50.9, 60.1, 70.3, 80.5, 90.7, 100.9), sex = c("M", "F", "M", "F", "M", "F", "M", "F", "M", "F") ) +wilcox_akp_test(df, var = "value") +#> # A tibble: 1 × 5 +#> statistic p.value method alternative akp_effect +#> <dbl> <dbl> <chr> <chr> <dbl> +#> 1 15 0.690 Wilcoxon rank sum exact test two.sided 0.318