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Release v2.1.6
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dbolotin committed Nov 27, 2017
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18 changes: 18 additions & 0 deletions CHANGELOG
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MiXCR 2.1.6 (28 Nov 2017)
========================

-- *(beta)* Added JSON-formatted reports. Use `--json-report` option in `align`,
`extendAlignments`, `assemblePartial` or `assemble` actions to create JSON report or append it to
already existing report file ([jsonl](http://jsonlines.org/)). This feature is intended to simplify
batch analysis, and analysis automation. E.g. [jq](https://stedolan.github.io/jq/) util can be used
to aggregate information from multi-json-report files.
-- Report file appends are made atomic. Now you can safely specify the same report file name in
several invocations of MiXCR, even if you run several instances of MiXCR in parallel. Should also
work for NFS and other remote FS, suppporting file locking.
-- Added chains column in export (`-chains` and `-topChains`)
-- minor: Several new counters added to `align` report
-- minor: Added proper filtering for alleles with wildcard symbols in `featureToAlign` region
-- minor: Fixed bug in align report (wrong total count in rare cases) #265
-- minor: Documentation added for `filterAlignments`


MiXCR 2.1.5 (24 Jul 2017)
========================

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7 changes: 0 additions & 7 deletions CHANGELOG_CURRENT
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*(beta)* Added JSON-formatted reports. Use `--json-report` option in `align`, `extendAlignments`, `assemblePartial` or `assemble` actions to create JSON report or append it to already existing report file ([jsonl](http://jsonlines.org/)). This feature is intended to simplify batch analysis, and analysis automation. E.g. [jq](https://stedolan.github.io/jq/) util can be used to aggregate information from multi-json-report files.
Report file appends are made atomic. Now you can safely specify the same report file name in several invocations of MiXCR, even if you run several instances of MiXCR in parallel. Should also work for NFS and other remote FS, suppporting file locking.
Added chains column in export (`-chains` and `-topChains`)
minor: Several new counters added to `align` report
minor: Added proper filtering for alleles with wildcard symbols in `featureToAlign` region
minor: Fixed bug in align report (wrong total count in rare cases) #265
minor: Documentation added for `filterAlignments`
2 changes: 1 addition & 1 deletion pom.xml
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<groupId>com.milaboratory</groupId>
<artifactId>mixcr</artifactId>
<version>2.1.6-SNAPSHOT</version>
<version>2.1.6</version>
<packaging>jar</packaging>
<name>MiXCR</name>

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