diff --git a/build.gradle.kts b/build.gradle.kts index aecaab8a5..39284fd62 100644 --- a/build.gradle.kts +++ b/build.gradle.kts @@ -134,7 +134,7 @@ val toObfuscate: Configuration by configurations.creating { val obfuscationLibs: Configuration by configurations.creating -val mixcrAlgoVersion = "4.6.0-85-fix-preset-export" +val mixcrAlgoVersion = "4.6.0-87-fix-local-preset-on-windows" // may be blank (will be inherited from mixcr-algo) val milibVersion = "" // may be blank (will be inherited from mixcr-algo or milib) diff --git a/itests/case_localPreset.sh b/itests/case_localPreset.sh new file mode 100755 index 000000000..1eb235b07 --- /dev/null +++ b/itests/case_localPreset.sh @@ -0,0 +1,17 @@ +#!/usr/bin/env bash + +set -euxo pipefail + +mixcr exportPreset --preset-name generic-amplicon \ + --species hs \ + --rna \ + --floating-left-alignment-boundary \ + --floating-right-alignment-boundary J \ + --add-step assembleContigs \ + preset.yaml + +mixcr analyze --verbose local:preset test_R1.fastq test_R2.fastq with_dot +[[ -f with_dot.clna ]] || exit 1 + +mixcr analyze local#preset test_R1.fastq test_R2.fastq with_sharp +[[ -f with_sharp.clna ]] || exit 1