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src/main/java/com/milaboratory/mixcr/cli/AbstractActionReport.java
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| /* | ||
| * Copyright (c) 2014-2017, Bolotin Dmitry, Chudakov Dmitry, Shugay Mikhail | ||
| * (here and after addressed as Inventors) | ||
| * All Rights Reserved | ||
| * | ||
| * Permission to use, copy, modify and distribute any part of this program for | ||
| * educational, research and non-profit purposes, by non-profit institutions | ||
| * only, without fee, and without a written agreement is hereby granted, | ||
| * provided that the above copyright notice, this paragraph and the following | ||
| * three paragraphs appear in all copies. | ||
| * | ||
| * Those desiring to incorporate this work into commercial products or use for | ||
| * commercial purposes should contact the Inventors using one of the following | ||
| * email addresses: [email protected], [email protected] | ||
| * | ||
| * IN NO EVENT SHALL THE INVENTORS BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT, | ||
| * SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS, | ||
| * ARISING OUT OF THE USE OF THIS SOFTWARE, EVEN IF THE INVENTORS HAS BEEN | ||
| * ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. | ||
| * | ||
| * THE SOFTWARE PROVIDED HEREIN IS ON AN "AS IS" BASIS, AND THE INVENTORS HAS | ||
| * NO OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS, OR | ||
| * MODIFICATIONS. THE INVENTORS MAKES NO REPRESENTATIONS AND EXTENDS NO | ||
| * WARRANTIES OF ANY KIND, EITHER IMPLIED OR EXPRESS, INCLUDING, BUT NOT | ||
| * LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY OR FITNESS FOR A | ||
| * PARTICULAR PURPOSE, OR THAT THE USE OF THE SOFTWARE WILL NOT INFRINGE ANY | ||
| * PATENT, TRADEMARK OR OTHER RIGHTS. | ||
| */ | ||
| package com.milaboratory.mixcr.cli; | ||
|
|
||
| import com.fasterxml.jackson.annotation.JsonFormat; | ||
| import com.fasterxml.jackson.annotation.JsonProperty; | ||
| import com.milaboratory.mixcr.util.MiXCRVersionInfo; | ||
| import com.milaboratory.util.TimeUtils; | ||
|
|
||
| import java.util.Date; | ||
|
|
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| public abstract class AbstractActionReport implements ActionReport { | ||
| private Date date = new Date(); | ||
| private String commandLine; | ||
| private String[] inputFiles, outputFiles; | ||
| private long startMillis, finishMillis; | ||
|
|
||
| @JsonProperty("timestamp") | ||
| @JsonFormat(shape = JsonFormat.Shape.STRING, pattern = "yyyy-MM-dd HH:mm:ss.SSSZ") | ||
| public Date getDate() { | ||
| return date; | ||
| } | ||
|
|
||
| @JsonProperty("commandLine") | ||
| public String getCommandLine() { | ||
| return commandLine; | ||
| } | ||
|
|
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| @JsonProperty("inputFiles") | ||
| public String[] getInputFiles() { | ||
| return inputFiles; | ||
| } | ||
|
|
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| @JsonProperty("outputFiles") | ||
| public String[] getOutputFiles() { | ||
| return outputFiles; | ||
| } | ||
|
|
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| @JsonProperty("executionTimeMillis") | ||
| public long getExecutionTimeMillis() { | ||
| return finishMillis - startMillis; | ||
| } | ||
|
|
||
| @JsonProperty("version") | ||
| public String getVersion() { | ||
| return MiXCRVersionInfo.get().getShortestVersionString(); | ||
| } | ||
|
|
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| public void setCommandLine(String commandLine) { | ||
| this.commandLine = commandLine; | ||
| } | ||
|
|
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| public void setInputFiles(String... inputFiles) { | ||
| this.inputFiles = inputFiles; | ||
| } | ||
|
|
||
| public void setOutputFiles(String... outputFiles) { | ||
| this.outputFiles = outputFiles; | ||
| } | ||
|
|
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| public void setStartMillis(long startMillis) { | ||
| this.startMillis = startMillis; | ||
| } | ||
|
|
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| public void setFinishMillis(long finishMillis) { | ||
| this.finishMillis = finishMillis; | ||
| } | ||
|
|
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| private static String join(String[] strs) { | ||
| StringBuilder builder = new StringBuilder(); | ||
| for (int i = 0; ; ++i) { | ||
| builder.append(strs[i]); | ||
| if (i == strs.length - 1) | ||
| break; | ||
| builder.append(','); | ||
| } | ||
| return builder.toString(); | ||
| } | ||
|
|
||
| public void writeSuperReport(ReportHelper helper) { | ||
| if (!helper.isStdout()) | ||
| helper.writeField("Analysis Date", getDate()) | ||
| .writeField("Input file(s)", join(getInputFiles())) | ||
| .writeField("Output file(s)", join(getOutputFiles())) | ||
| .writeField("Version", getVersion()); | ||
|
|
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| if (!helper.isStdout()) | ||
| if (getCommandLine() != null) | ||
| helper.writeField("Command line arguments", getCommandLine()); | ||
|
|
||
| if (getExecutionTimeMillis() >= 0) | ||
| helper.writeField("Analysis time", TimeUtils.nanoTimeToString(getExecutionTimeMillis() * 1000_000)); | ||
| } | ||
| } |
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