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About:
- MitoZ provides a "one-click" solution to get annotated mitogenomes from raw data fastq files.
News
- MitoZ 3.5-beta has been released (https://github.com/linzhi2013/MitoZ/releases/tag/3.5-beta), and can be installed via the https://github.com/linzhi2013/MitoZ/wiki/Installation#5-source-codes method. See https://github.com/linzhi2013/MitoZ/releases/tag/3.5-beta for new features and fixed bugs
- Distribute my working MitoZ environment using Conda-Pack to try to avoid the missing Perl module problem. It is worth a try if you have the missing Perl module problem!
- Add Docker support for MitoZ (see the Installation part)
- Share the Singuliarty image of the latest version of MitoZ via Dropbox (see the Installation part)
- Added a tutorial at https://github.com/linzhi2013/MitoZ/wiki/Tutorial and explained the resulting files
- MitoZ 3.4 has come out (and rebuilt for the Conda version too linzhi2013#151) and fixed a few bugs, it's recommended to update to this version!
See
- Installation: https://github.com/linzhi2013/MitoZ/wiki/Installation and linzhi2013#152
- New Features: https://github.com/linzhi2013/MitoZ/wiki/New-Features
- Tutorial: https://github.com/linzhi2013/MitoZ/wiki/Tutorial
- Documentation: https://github.com/linzhi2013/MitoZ/wiki
- Latest release: https://github.com/linzhi2013/MitoZ/releases/
Bugs and Questions
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Have a look at https://github.com/linzhi2013/MitoZ/issues and https://github.com/linzhi2013/MitoZ/wiki/Known-issues for known bugs or issues.
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Please try the latest version first if you find some bugs in the old versions
- to do that, you should specify the version of MitoZ when you use the
mamba/condacommand (please refer to the installation instruction), as I found out that many people still download the older versions.
- to do that, you should specify the version of MitoZ when you use the
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I have been updating the documentation from time to time, so it may be good for you to check the documentation again every after some time.
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In case there are still bugs in the latest version, please firstly search https://github.com/linzhi2013/MitoZ/issues and the Wiki to check whether similar questions have been raised by other users. If no related issues and answers are found, then please raise a new issue. Thank you!
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Any feedbacks are wellcome!
- Meng G, Li Y, Yang C, Liu S. MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization. Nucleic acids research. 2019 Jun 20;47(11):e63-. https://doi.org/10.1093/nar/gkz173
- See also https://github.com/linzhi2013/MitoZ/wiki/Citations