+
+## Overview
+MINT assists an analyst to easily use sophisticated simulation models and data in order to explore the role of weather and climate in water on food availability in select regions of the world. For example, an analyst can use MINT to investigate the expected crop yields given different rainfall predictions through its effect on flooding and drought. MINT’s simulation models are quantitative and contain extensive subject matter knowledge. For example, a hydrology model contains physical laws that describe how water moves through a river basin, and uses data about the elevation of the terrain and the soil types to determine how
+much water is absorbed in the ground and how the water flows over a land surface.
+
+Different analysts may have different expertise and run different types of models. Each analyst is given a separate account in MINT, and their activities noted with their user name. All analysts can see the same information in their interface, so when one completes a task all the results are accessible to all the analysts. An analyst can also use MINT to investigate possible interventions. For example, changing planting windows to an earlier time might increase crop production, which can be analyzed using an agriculture model. Another possible intervention to increase crop yield is the use of fertilizer subsidies, which can be studied by using an economic model.
+
+!!! hint "Quick links"
+ * MINT Portal: https://mint.isi.edu/
+
+## Capabilities of MINT
+To enable these kinds of explorations, MINT contains a range of hydrologic, agricultural, and economic
+models as well as a wealth of regional-level data needed to run those models.
+
+After selecting a region of the world, the MINT main interface guides an analyst through a series of
+tasks:
+
+*Fig. 1: Tasks available in MINT.*
+
+Identify geographical areas for modeling. MINT shows pre-defined areas such as river basins
+for hydrology modeling, cropland areas for agriculture modeling, and administrative regions for
+economic modeling.
+
+ * **Browse and understand the models available**. A user can browse MINT’s Model Catalog to see the models available, their characteristics, their data needs, the processes they represent along with the variables involved in those processes, and the results they produce. The models in MINT have been customized to the pre-defined geographical areas.
+ * **Browse the datasets available**. A user can browse the MINT’s Data Catalog to see all the datasets available. MINT is pre-populated with datasets relevant to modeling in the pre-defined regions. MINT highlights special datasets that may be of particular interest, such as high-quality datasets, necessary for the modeling tasks as well as novel datasets extracted from remote sensing data through machine learning techniques. These special datasets allow modeling experts to prepare and customize models for a region, so they have higher accuracy.
+ * **Use models to run simulations that help answer questions of interest**. MINT guides an analyst through necessary steps to select and setup a model thread to run by offering sensible choices based
+on the analyst’s previous selections and information about the models and data in the Model and Data Catalog. The next section provides more information on this topic.
+ * **Visualize results of model runs through interactive dashboards**. Once models are run, analysts can visualize the results and include these visualizations as well as their provenance details into dynamic interactive reports.
+ * **Collaborate with other users with different expertise**. Analysts can share their modeling results with others, request results from others, and discuss how to coordinate modeling tasks for consistency through a message board.
+
+## Formulating Modeling Problems and Modeling Tasks in MINT
+
+*Fig. 2: Problem statements in MINT.*
+
+Analysts frame their problem into problem statements that establish the guiding context and its
+associated time frame to reflect the planning horizon or time period of interest. For instance, a problem
+statement can be formulated as “Explore interventions to increase agricultural productivity in South Sudan
+before the 2018 lean season”.
+
+For each problem statement, analysts can formulate modeling tasks. Each modeling task is associated
+with an indicator relevant to the decision that want to inform or support. There are two types of indicators:
+indices and modeling variables. For example, the problem statement of food security in South Sudan
+described above, one modeling task can be framed as “Flooding effect on crop production during the
+growing season”, and a separate modeling task could be “Potential crop production without flooding”. Note
+that the time frame of the tasks does not necessarily reflect that of the problem statement. In the first
+example, flooding is relevant to both the planting time and growing season of an agriculture model which
+would place the start of the simulation earlier than the problem’s time frame.
+
+*Fig. 3: Problem statements in MINT.*
+
+*Fig. 4: Task form details.*
+
+Analysts may want to explore indicators values under different initial conditions. These are expressed
+as adjustable parameters and input variables of models. For instance, an analyst can explore different weed
+management strategies on crop production by specifying different values for adjustable parameter that sets
+the crop to weeds ratio (or range thereof) in an agriculture model.
+
+Note that problem statements and task statements are not processed by MINT, it is simply a starting
+point for an analysis. An analyst may create several problem statements, each leading to different analyses.
+In contrast, MINT understands the indicators and modeling variables of modeling tasks, and uses them to
+guide analysts in finding and setting up appropriate models.
+Interventions reflect human actions that can change the course of a system’s behavior. They can be
+explored through the settings of adjustable parameters and input variables. For example, if an agency
+chooses to establish a fertilizer subsidy to incentivize farmers to plant a particular crop, an analyst can
+explore these interventions by adjusting a model’s parameter for fertilizer prices. There is documentation
+about this in the MINT Model Catalog, and in the Task editor when the adjustable variable chosen has an
+associated intervention.
+
+A modeling task can be accomplished through several modeling threads. Separate modeling threads
+may be created to explore different aspects of the task. For example, a modeling task to explore a crop
+production index may have two modeling threads, each using a different agriculture model. Separate
+threads can be created to explore different initial assumptions, or to consider different indices. Each
+modeling thread is independent of others.
+
+## Using Models in MINT
+
+MINT helps analysts to use models to accomplish the modeling tasks through several steps:
+
+1. **Select variables**: MINT shows analysts the possible indicators that can be generated based on the
+models available. The analyst can also select input variables and parameters that they wish to adjust.
+2. **Select models**: MINT then shows analysts the models available that generate the indicators of
+interest, and that have the adjustable parameters and intervention inputs desired by the analyst.
+Analysts can compare models and select one or more models to run.
+3. **Select datasets**: MINT then shows analysts the datasets that are available as inputs to the models
+selected. Analysts can compare datasets and select one or more datasets to run.
+4. **Set up models**: MINT shows analysts the adjustable parameters that are input to the model, and
+the possible values that they can take. Analysts can select multiple parameter values which result
+in different runs.
+5. **Monitor the status of model runs**: This allows analysts to track model executions that take a long
+time, and to be informed of execution failures.
+6. **View results of model executions**: Analysts can download and save any results from models.
+7. **Visualize model results**: MINT generates interactive visualizations that allow analysts to
+understand the model results.
+
+When a step has been completed, it is shown in a darker color. Users can revisit an earlier step, and if
+the choices are changed for that step then the subsequent steps are canceled and need to be redone.
+
+Each of these steps is done in a separate Web page in MINT, and has its own URL. This is very
+convenient to point other analysts to a particular selection or result by sharing its URL through the message
+board.
+
+## Glossary
+* **Adjustable parameter**: A parameter whose value affects an input variable of a model. For instance, an
+analyst can explore different weed management strategies on crop production by specifying different values
+for adjustable parameter that sets the crop to weeds ratio (or range thereof) in an agriculture model.
+* **Driver**: An input dataset that creates initial conditions for a model. For example, a weather forecast.
+Index: Combination of 2 or more variables that can be measured (any of which could be seen as indicators)
+with the goal of using a single number for assessment and comparison purposes.
+* **Indicator**: A quantifiable variable that is identified as playing a special role, namely to help characterize a
+complex property of a system being modeled. Indicators can be single variables or combinations of
+variables (called indices).
+Input variable: A variable that will influence a response in the system, and is input to a model.
+* **Modeling task**: A modeling task is accomplished through a series of modeling runs in order to answer a
+question of interest.
+* **Modeling thread**: A modeling thread groups together modeling runs that are conceptually related.
+Modeling problem: A text statement that describes what an analyst wants to study in a system over a
+specific time period. The statement is not machine readable, it is simply a mechanism for analyst to organize
+their investigations.
+* **System**: A physical system under study, where models capture important processes or aspects of the system
+so its response to input variables can be studied.
+
+## Frequently Asked Questions (FAQs)
+**Q1**: How should I formulate problem statement?
+
+**A1**: Problem statements are high-level problems set by the decision maker. They need to be broad enough to encompass a problem of interest.
+
+**Q2**: How should I formulate modeling tasks?
+
+**A2**: Modeling tasks can be formulated in any way that the analyst finds useful to decompose a problem
+statement into tractable modeling tasks. For example, a separate modeling task should be created for each
+indicator that needs to be generated to support the problem statement. A good practice is that each modeling
+task concerns only one model or discipline, over a subregion appropriate for the model.
+
+**Q3**: How should I use modeling threads?
+
+**A3**: Separate modeling threads can be used to explore alternative models (i.e. run Model 2 and then run
+Model 1 to see if the results are consistent and therefore there should be higher confidence in the predicted
+outcomes), explore alternative values for input variables and adjustable parameters, and use different input
+data.
+
+**Q4**: Can I point another analyst to a result from my own work?
+
+**A4**: Yes. In the message board, any message may include the URL of any page in the MINT interface. Simply cut and paste the URL of that page that contains the result or step that you want another analyst to see.
+
+**Q5**: Can I run more than one model within a single modeling thread?
+
+**A5**: This may come up when the output from a model may be needed as input to another model. For
+example, modeling effective crop production using an economic model requires understanding how a crop
+responds to changes in fertilizer rates using an agriculture model. In some cases, each model may be run
+by a different analyst, but the analysts may need to coordinate the parameters and input variables for both
+models to be consistent. In MINT, each model would be part of a different modeling task or thread, and the
+analysts would need to communicate with one another through the message board. For example, an analyst
+can start a modeling thread and send the URL of that thread via the message board to another analyst asking
+them to do the modeling. The second analyst can share the results through a URL in a message.
+
+**Q6**: Do I need to upload data to MINT?
+
+**A6**: No. MINT already contains many relevant datasets for the regions of interest. In the future, MINT
+will include capabilities for data specialists to add new data sources.
+
+**Q7**: Do I need to add new models in MINT?
+
+**A7**: No. MINT is pre-populated with models for the regions of interest. In the future, MINT will include
+capabilities for modeling experts to add new models.
\ No newline at end of file
diff --git a/docs/indicators.md b/docs/indicators.md
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+# An Overview of Indicators Generated by MINT
+
+The rest of this document gives an overview of the indicators for each subject, and their importance for the region.
+
+## Agriculture Indicators
+The **Potential Crop Production** is generated using the Cycles model, which reports outputs for maize, sorghum, sesame and peanuts for all of South Sudan. The focus of these simulations is the first growing season (planting March through May), which leads to the late June through August harvest. The crop yields and other variables reported, correspond spatially to a climate grid (*4 x 4 km*) covering all of South Sudan.
+At each grid point we simulated a full combinatorial matrix of *7* planting dates (from early to late planting), *5* nitrogen fertilization rates and *3* weed pressure levels. That provides a full range of potential situations that should encompass production conditions. We provide the model outputs, which are admittedly overwhelming and we are working on visualizations to facilitate understanding.
+
+The **Seasonal Crop Production Index** also generated using the Cycles model, provides a fast and robust way of reporting normalized yields for a given grid point or region. The goal of the index is to easily segment *“years”* or *“seasons”* that can be problematic for food production, and to provide an intuitive sense of the magnitude of the problem. While the raw yield outputs might be difficult to interpret for the non-expert, the index is more transparent. It is based on the ratio of the yield of a given combination of planting date, fertilization and weed pressure to the median yield under such conditions across years. An *index = 1* means that the year resembles the median years, and it is assumed that it represents a neutral condition (neither local excess or shortage of food supply). An *index > 1* means that the local food supply may exceed the median, and the larger the number the better off the location. The caveat here is that flooding damage might be underestimated. As we refine our simulations this limitation will be lifted. An *index < 1* means a situation worse than normal, and the lower the value the worse the situation. It is safe to assume that this is a reliable indicator of local food shortage. We are working on visualizations that map this index, to give an analyst a sense of the geographical variation of the index. The figure below shows a summary for this index for maize for one grid point in the Pongo Basin.
+
+*What additional information can complement this raw index?*
+It would be important to have an indicator of both the technology level of a given system and the dependence of a region on the season’s harvest. The higher the technology and the lesser the dependence, the lesser the risk of an index below *1*, and conversely, the closer to technology to low-input subsistence agriculture and the higher the dependence on local food supply the more severe the risk. In other words, the index may draw the eyes quickly to the areas at risk *(index < 1)*, but context is needed for a more granular interpretation.
+
+Figure 1 shows the Variation of the Seasonal Crop Production Index for maize for one agricultural grid point in the Pongo Basin. The nitrogen rates represent from low to high fertilization (for the agronomy minded, *78* to *1250 kg/ha* of raw fertilizer with *32%* nitrogen). The 0.4 in the legend indicates the weed pressure (medium). The planting dates are not shown here, but an analyst can easily explore their impact by expanding the data selection. Clearly, years 2011, 2016 and 2017 in particular were problematic.
+
+*Fig. 1: Variation of the Seasonal Crop Production Index for maize for one agricultural grid point in the Pongo Basin.*
+
+**Crop Production** is estimated using an economic model of decisions by agricultural households about the use of inputs (e.g., land and fertilizer) to produce a set of crops currently grown in the study region. The economic model consists of a numerical simulation of a non-linear constrained optimization problem that is calibrated to reflect observed decision-making in the study region. The calibration approach uses Positive Mathematical Programming (PMP), which ensures that the simulation model reflects unobserved constraints (e.g., access to credit, labor availability, crop rotation practices) that affect decisions about agricultural production. By varying related parameters (prices, land/fertilizer cost) one at a time between *-50* and *50* (increment by *10*) for each crop (cassava, sorghum, maize, groundnuts, and sesame) within MINT, simulated crop production results are generated to predict how farmers react to potential economic condition changes.
+
+The model is aggregate and represents decision-making by all agricultural households in the study region. The model predicts agricultural production, taking into account the behavioral response of farming households to changes in environmental, economic, and policy drivers. Output variables include the total amount of land in agricultural production, the amount of land and fertilizer used per unit area in the cultivation of each of the region’s crops, average crop yields, and net revenues earned in agricultural production. For the Pongo Basin in South Sudan, the model generates these output variables for maize, cassava, sorghum, groundnuts, and sesame seed crops.
+
+## Hydrology Indicators
+
+We use the PIHM and TopoFlow models to generate hydrology indicators. These models require a large number of spatially-distributed input variables that describe various properties of the topography (e.g. elevation, slope, flow direction, total contributing area), the meteorology (rainfall rate, relative humidity, air temperature, surface temperature, etc.) and the soil (including many intrinsic and hydraulic properties). The models also require information about the bankfull widths, depths and bed roughness of all the channels within the river networks themselves, which are parameterized with empirical formulas.
+
+**Geospatial Flood Exceedance index** are generated using the PIHM hydrological model. PIHM uses results from a large number of runs over time to compute statistical indexes that characterize the likelihood and potential magnitude of flooding at individual locations in a region (i.e. for every model grid cell). In this case the inundation or flooding potential is determined for 2017 as the simulated average depth of water over a given month with higher values indicating a greater likelihood of flooding. In the long term this index will be based on the full historical record allowing a probabilistic measure of flooding.
+
+We are focused on modeling the hydrologic response to individual storms. This means computing geospatial grids that vary in time (like a movie), for the channel depths, flood depths, velocities and discharges of rivers. This type of output shows the areas where flooding occurs, as well as how long before the flooding subsides and many other related aspects of river response to given storms or droughts. We provide raw model output, as well as the data we used for the visualization below.
+
+Figure 2 shows this index for the Lol-Kuru rivers with the outlet defined at the location just upstream of where the Pongo river enters the Lol. The visualization shows the parts of the basin where the model points to areas that are most likely candidates for flooding, crop disruption and potential migration. Higher values have a higher likelihood of flooding. In this example the sample size is too small to be reliable but future analyses will use several decades of simulation results to improve the reliability of the results including ensemble simulations.
+
+*Fig. 2: Snapshots of the Geospatial Flood Exceedance index for Lol-Kuru (Pongo) region show that different areas are affected over time. A movie is available in the MINT indicators spreadsheet.*
+
+The **Streamflow** - Duration Index (SDI), also called a *flow-duration-curve* (FDC), represents the relationship between the magnitude and frequency of daily streamflow for a particular river basin, and provides an estimate of the percentage of time a given streamflow was equaled or exceeded over the historical record of the data. An SDI provides a simple, yet comprehensive, graphical view of the overall historical variability associated with streamflow in a river basin. SDI is the complement of the cumulative distribution function (CDF) of daily streamflow. Each value of discharge Q has a corresponding exceedance probability, and an SDI is simply a plot Qpversus the pthquantile or percentile of daily streamflow versus exceedance probability *p = 1-Prob[Q<= Qp]*.
+
+The SDI was computed for the simulated Lol-Kuru rivers with the outlet defined at the location just upstream of where the Pongo river enters the Lol. The simulation was for 2001-2017 daily climate data. The model was manually calibrated and inputs and outputs of the simulation can be found in the table.
+
+Figure 3 below is the simulated runoff at the basin outlet and Figure 4 is the SDI for the basin. The daily streamflow record mirrors the seasonality of rainfall, although the peak or maximum annual daily flows show extreme fluctuations in both magnitude and frequency of occurrence. The impact of frequency-magnitude variability on food security is that droughts and floods tend to occur in clusters with memory or duration lasting several years. In addition the question of non-stationarity or time varying statistics may have to be addressed in future analyses.
+
+*Fig. 3: The 2001-2017 daily streamflow in the Lol-Kuru catchment (Pongo), used to compute the SDI indicator*
+
+*Fig. 4: The Streamflow duration index (SDI) for the Lol-Kuru catchment (Pongo). The SDI represents the magnitude-frequency for historical daily streamflow. Annual average flows less than the median (0.5 Exceedance) represent likely drought conditions while annual average flow greater than .001 exceedance frequency are likely associated with flooding conditions.*
+
+We report the **River Discharge** and **River Flood Depth** computed with the TopoFlow hydrologic model for the Baro River basin draining to the town of Gambela, Ethiopia. The spatial extent of the basin in shown in Figure 5.
+
+*Fig. 5: Shaded relief image for the Baro River basin draining to the town of Gambela, Ethiopia, with overlaid basin boundary and extracted channel network. The spatial extent of this image matches that of the 2 movies for River Discharge and River Flood Depth, with links in the spreadsheet, computed with the TopoFlow hydrologic model.*
diff --git a/docs/interventions.md b/docs/interventions.md
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+# Overview of Interventions Currently Supported in MINT
+
+Interventions in MINT reflect human actions that can change the course of a system’s behavior. Currently, the models in MINT supports an analyst to explore three kinds of interventions: fertilizer subsidies, planting windows, and weed control methods.
+
+In MINT, an intervention is linked to an adjustable parameter of a model. The table below summarizes the interventions that MINT currently supports.
+
+| **Intervention** | **Description** | **Model** | **Adjustable Parameter(s)** |
+|----------------------|------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|--------|------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|
+| Fertilizer subsidies | Interventions concerning fertilizer subsidies can be expressed in this model as a percentage of fertilizer prices | EACS | `sesame-fertilizer-cost-adjustment`, `cassava-fertilizer-cost-adjustment`, `maize-fertilizer-cost-adjustment`, `sorghum-fertilizer-cost-adjustment`, `groundnuts-fertilizer-cost-adjustment` |
+| Planting windows | Interventions that force specific target planting windows can be expressed in this model as start and end planting dates | Cycles | `start-planting-day`, `end-planting-day` |
+| Weed control | Interventions concerning weed control and weed management practices can be reflected in this model by indicating the fraction of weeds that will remain after the weed treatments applied by farmers | Cycles | `weed-fraction` |
+
+There are two specific places in the MINT user interface where interventions can be seen:
+
+ * The MINT Model Catalog. There is documentation about interventions under the Parameters and Inputs tab. The parameters table has a column called “Relevant Interventions”, and hovering over the intervention shows its description.
+ * The Modeling Task Editor. When an adjustable variable is chosen that has an associated intervention there is a description of the intervention shown.
+ * The Setup step in the Use Models tab. When the adjustable parameters are edited, the documentation shows when an intervention can be considered.
+
+For example, an intervention that could be explored is providing fertilizer subsidies to farmers. This can be explored with the EACS economic model by adjusting the parameters concerning the cost of fertilizers for each crop type. The maize fertilizer price adjustment parameter reflect the percentage change in the unit cost of nitrogen fertilizer as an input into the production of maize, where a reduction in the unit cost of nitrogen fertilizer for maize can be interpreted as a fertilizer subsidy for maize. The range of this parameter is from *-50* to *50*. So a value of this parameter of *-10* reflects a moderate subsidy. The model takes into account farmer’s behaviors when fertilizer cost is lower, and will adjust crop production accordingly.
diff --git a/docs/modelcatalog.md b/docs/modelcatalog.md
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+# A Quick Guide to the MINT Model Services
+## Overview
+The MINT Model Services describe physical, environmental and social models (e.g., climate, hydrology, agriculture or economy models) in order to:
+
+ * **Find relevant models**, according their name, keywords, variables or region where they can be executed.
+ * **Execute models**, either by providing new input files and parameters or by choosing pre-selected models that have been setup by experts.
+ * **Understand how to use models** and how to interpret their results. In order to prepare input data for model execution and ensure that users can use model results, the most relevant variables included in the input and output files should be described. Similarly, other geospatial and temporal information is critical for providing the context key to understand model results.
+
+Figure 1 shows an overview of the main categories we use to describe models, which are further described in the following sections.
+
+*Fig. 1: Overview of the Model Services' main categories for finding, executing, and understanding models.*
+
+!!! tip "Quick links"
+ * GUI for exploring the contents of the model catalog: [https://models.mint.isi.edu/home](https://models.mint.isi.edu/home). [(See a video of the main features)](https://www.youtube.com/watch?v=C9rxGT2k9is)
+ * REST API for adding/modifying/deleting model metadata: [https://api.models.mint.isi.edu/latest](https://api.models.mint.isi.edu/latest)
+ * [Requires log in] GUI for configuring and editing models: [https://mint.isi.edu/ethiopia/models/configure](https://mint.isi.edu/ethiopia/models/configure)
+ * Model services API client and examples: [https://model-catalog-python-api-client.readthedocs.io/en/latest/](https://model-catalog-python-api-client.readthedocs.io/en/latest/)
+ * Model catalog API documentation: [https://model-catalog-python-api-client.readthedocs.io/en/latest/endpoints/](https://model-catalog-python-api-client.readthedocs.io/en/latest/endpoints/)
+
+## Making your model findable
+--------
+This level provides a basic description of a model. At this stage, models **do not need** to be executable in order to be included in the model catalog. Making a model findable ensures that it has minimum metadata to describe its attribution, proper citation, and (if they exist) pointers to the website, creator, license, and maintainer in addition to relevant information to modelers such as a description, basic keywords and relevant assumptions.
+
+### Model and model versions
+We include two main levels of granularity for making models findable. The first involves describing the model itself, at a generic level. The second level describes the model version(s) available in the catalog. Versions do not necessarily supersede each other as models under continuous development may have multiple co-existing versions with different characteristics serving different purposes (see Figure 2).
+
+*Fig. 2: Capturing models and model versions. The MODFLOW groundwater model has two versions, one for official USGS use and the other for a specific modeling problem. Both versions are currently in use.*
+
+## Making your model executable
+--------
+The main driver for the model catalog is to make the model executable with different input variable and parameter values. For instance, the particular configuration of the Topoflow hydrology model shown in Figure 3 allows to manipulate two *input files* (precipitation and configuration files to turn on the infiltration process) and two *parameters* (hydrologic conductivity and the simulation years to run the model), which describe numerical options for the model:
+
+
+
+*Fig. 3: TopoFlow model configuration with 2 input files, 2 input parameters, and 2 outputs.*
+
+We may want to execute this model in a region with a certain configuration file and precipitation rates, or we may want allow users to change both of these files to files they have created themselves. In order to support this flexibility, we distinguish among the following concepts for executing models:
+
+### Model configuration
+Represents a unique way of running a model, exposing concrete inputs, outputs, and parameters. Here we refer to *model inputs/outputs* as the data types that are used for executing the model rather than pointing to specific files. For instance, in Figure 3 the precipitation rates is a CSV file with the information about the rain amount in an area. We use the term *parameters* to refer to those values a user may be interested in changing in a model (e.g., the hydrological conductivity or the simulation years in Figure 3).
+
+!!! hint ""
+ The same version of a model may have different model configurations, which expose different functionalities. For example, TopoFlow may have another model configuration without considering infiltration, which returns different results from the one in Figure 3.
+
+### Model configuration setup
+Model configurations may have multiple parameters aimed at expert users that are too complicated and not necessarily useful to users outside the domain of expertise. A *model configuration setup* represents a layer of abstraction over a model configuration, simplifying it and making it easier to execute in a correct and meaningful manner. Using the example in Figure 3, let's create a model configuration setup for a particular region:
+
+*Fig. 4: Main differences between model configuration and model configuration setup. While a model configuration exposes all the files and parameters needed to execute a model (2 files and 2 parameters on the left), the model configuration setup on the right simplify them (only precipitation rates and simulation years are exposed).*
+
+As shown in Figure 4 (right), the model configuration setup has been adjusted with the input file with infiltration to a fixed URL by an expert modeler and with a fixed hydrologic conductivity value reasonable for the study region. To execute the setup, users would only have to select the precipitation files and simulation years.
+
+!!! hint ""
+ Setups may have all input files initialized by expert users, allowing variation only in the parameters that may be interesting in a region. This way users can execute model ensembles of interest without worrying about complex input file selection and preparation that may not be relevant to their task.
+
+
+!!! tip "When should you use model configurations versus model configuration setups?"
+ An executable model with a fixed subset of inputs is a model configuration setup. This is extremely useful to fix values for variables and parameters that (1) are invariant, (2) require lots of expertise to set correctly, (3) may not be relevant to the problem at hand.
+
+
+## Making your model understandable
+--------
+This last level ensures that the details about the model are easy to understand by others. This task requires providing metadata in the following categories:
+
+### Model inputs, outputs, and parameters
+Because of the level of abstraction desired for model configurations and setups, they may not sufficiently describe a model for other researchers with expertise in the domain to understand and re-use them. For each input (including parameters) and output, we recommend providing a short description on how they affect the behavior of the model. For parameters, it is also necessary to describe their default values and minimum and maximum values.
+
+### Variables and Units
+Variables for each input and output datasets used in configurations should be described in as many details as possible to help with data preparation. Units are often the most important piece of information when dealing with data transformation.
+
+!!! hint ""
+ While it is not required to describe all input/output variables in a model, we recommend to describing at least all those that are critical for selecting data (e.g., precipitation variable in the Precipitation rates file of Figure 3) and plotting results.
+
+
+### Grid
+Models with a geospatial grid (e.g., hydrology) should describe the characteristics of the grid (point based, 2-D, irregular, etc.) so as help determine whether regridding of the inputs/outputs is necessary. In addition, providing the coordinate projection used in the input/output data is required to know how to project it in a map.
+
+### Region
+Model configurations and setups are usually calibrated or configured by experts (manually or automatically) to be run in a specific region. Hence, describing the region in which the model has been prepared to run is required to understand the context of the obtained results. For example, the hydrology model shown in Figure 3 is may configured differently in regions rich in clay, with little or no infiltration possible.
+
+### Time Step
+Different models output data at different time steps, usually depending on the data used as input. This information is necessary for data transformation and for linking models with different time requirements (e.g., a hydrology model may become unstable if run every month but monthly time steps are needed to initialize soil moisture in an agriculture model.)
+
+## Usage Examples and Tutorial
+We have prepared a set of materials to help illustrating how the model catalog API and client work.
+
+1. Step by step example on how to search models (e.g., by keyword) with the model catalog API: [https://model-catalog-python-api-client.readthedocs.io/en/latest/models/](https://model-catalog-python-api-client.readthedocs.io/en/latest/models/)
+2. Step by step example on how to retrieve the available versions of a model: [https://model-catalog-python-api-client.readthedocs.io/en/latest/modelversion/](https://model-catalog-python-api-client.readthedocs.io/en/latest/modelversion/)
+3. Step by step example on how to find executable model configurations of a model: [https://model-catalog-python-api-client.readthedocs.io/en/latest/modelconfigurations/](https://model-catalog-python-api-client.readthedocs.io/en/latest/modelconfigurations/)
+4. Examples on how to execute models in the model catalog with a command line client: [https://model-catalog-python-api-client.readthedocs.io/en/latest/example/](https://model-catalog-python-api-client.readthedocs.io/en/latest/example/)
+5. Overview video of the main capabilities of the model catalog [(link to video)](https://www.youtube.com/watch?v=C9rxGT2k9is). A simplified overview can be seen below:
+
+
+
+## Status
+The current model catalog API ([v1.8.0](https://github.com/mintproject/model-catalog-fastapi/), released on Oct 21th, 2022) supports:
+
+ * Retrieving information from models [[GUI](https://models.mint.isi.edu/home), [API](https://model-catalog-python-api-client.readthedocs.io/en/latest/endpoints/), [API client](https://model-catalog-python-api-client.readthedocs.io/)]
+ * Edit information from model setups [[GUI](https://mint.isi.edu/ethiopia/models/configure), [API](https://model-catalog-python-api-client.readthedocs.io/en/latest/endpoints/)] (**needs authentication**)
+ * Adding new model metadata [[API](https://model-catalog-python-api-client.readthedocs.io/en/latest/endpoints/)] (**needs authentication**)
+ * Current schema (draft) for representing model metadata [current schema draft](https://github.com/mintproject/ModelCatalogInsertion/blob/master/examples/SetupExample_new.yaml)
+ * Command line interface for guiding, validating and helping users adding executable models ([currently under development](https://github.com/mintproject/ModelCatalogInsertion))
+
+## Next steps
+We are currently improving the model services to support the following capabilities:
+
+ * **[March 30]** Desktop Application for Model Execution (DAME) for running pre-configured hydrology models locally/on a server
+ * **[April 15]** Simple model insertion for running model executables.
+ * **[May 30]** Integrate data transformations for hydrology models supported.
+ * **[June 30]** Model insertion through guidebook for specifying compact metadata documentation in stages of progressive detail.
+ * **[July - August]** Improve integration and transition.
+
+
+Figure 5 shows an overview of the components that are part of the MINT model services and the new planned enhancements.
+
+*Fig. 5: Overview of MINT Model Services.*
diff --git a/docs/modeling.md b/docs/modeling.md
new file mode 100644
index 0000000..d5d28f1
--- /dev/null
+++ b/docs/modeling.md
@@ -0,0 +1,84 @@
+# MINT Modeling Status
+## South Sudan
+### Backcasting
+
+**Regions:** Focus on Pongo region (other regions by first approximation based on Pongo)
+
+**Time period supported:** any period between 2000-2017
+
+**Agriculture modeling for potential crop production (Cycles model):**
+
+ * Model is manually tuned for agriculture areas within Pongo region
+ * For other regions in South Sudan, the model can be tuned by hand and used
+
+**Economic modeling for crop production (EACS model):**
+
+ * Model is calibrated for areas within the Pongo region
+ * For other regions of South Sudan, the Pongo calibration of the model could be used as a first approximation
+
+**Hydrology modeling for flooding (PIHM model):**
+
+ * Only available as an emulator, for Pongo region only
+
+### Forecasting
+
+**Regions:** Focus on Pongo region (other regions by first approximation based on Pongo)
+
+**Time period supported:** 2018 (weather forecasting available for different percentiles).
+Forecasting is based on historical precipitation within Pongo Basin.
+A primer on forecasting in MINT is available [here](https://drive.google.com/file/d/1FtgmknPZdTKyKauC3VPPiI7ZIfkPYAM8/view).
+
+**Agriculture modeling for crop yield (Cycles model):**
+
+ * Model is manually tuned for agriculture areas within Pongo region
+ * For other regions in South Sudan, the model can be tuned by hand and used
+
+**Economic modeling for crop production (EACS model):**
+
+ * Model is calibrated for areas within the Pongo region
+ * For other regions of South Sudan, the Pongo calibration of the model could be used as a first approximation
+
+**Hydrology modeling:** Not available for forecasting.
+
+## Ethiopia
+### Backcasting
+
+**Regions:** Focus on Gambella region and Baro river (other regions by first approximation)
+
+**Time period supported:** any period between 2000-2017
+
+**Agriculture modeling for crop yield (Cycles model):**
+
+ * Model is tuned for agriculture areas within the Gambella region
+ * For other regions in Ethiopia, the model can be calibrated by hand and used
+
+**Economic modeling for crop production (EACS model):**
+
+ * Model is calibrated for areas within the Gambella region
+ * For other regions of Ethiopia, the Gambella calibration of the model could be used as a first approximation
+
+**Hydrology modeling for river discharge/flooding (PIHM model):**
+
+ * Model is available for Baro region only
+
+### Forecasting
+
+**Regions:** Focus on Gambella region and Baro river (other regions by first approximation)
+
+**Time period supported:** Time period supported: 2018 (weather forecasting available for different percentiles).
+Forecasting is based on historical precipitation within Baro Basin.
+A primer on forecasting in MINT is available [here](https://drive.google.com/file/d/1FtgmknPZdTKyKauC3VPPiI7ZIfkPYAM8/view).
+
+**Agriculture modeling for crop yield (Cycles model):**
+
+ * Model is manually tuned for agriculture areas within the Gambella region
+ * For other regions in Ethiopia, the model can be calibrated by hand and used
+
+**Economic modeling for crop production (EACS model):**
+
+ * Model is calibrated for areas within the Gambella region
+ * For other regions of Ethiopia, the Gambella calibration of the model could be used as a first approximation
+
+**Hydrology modeling for river discharge/flooding (TopoFlow model):**
+
+ * Model is available for Baro region only
diff --git a/docs/notebooks/modelcatalog/Obtain a model configuration by model.ipynb b/docs/notebooks/modelcatalog/Obtain a model configuration by model.ipynb
new file mode 100644
index 0000000..6ff52fd
--- /dev/null
+++ b/docs/notebooks/modelcatalog/Obtain a model configuration by model.ipynb
@@ -0,0 +1,7707 @@
+{
+ "cells": [
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "## MINT Model Catalog API client\n",
+ "\n",
+ "This notebook shows how interact with the MINT Model catalog using the MINT Model Catalog API client.\n",
+ "\n",
+ "For more information about this client: https://github.com/mintproject/MINT-ModelCatalogAPI-client\n",
+ "You can submit issues at https://github.com/mintproject/MINT-ModelCatalogIngestionAPI/issues"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "The tutorial shows:\n",
+ "1. Set up the configuration to interact with the API\n",
+ "2. List all the **Models**\n",
+ "3. Show the details of the **Model** `cycles`\n",
+ "4. List the **SoftwareVersions** of the **Model** `cycles`\n",
+ "5. Select a **SoftwareVersion**\n",
+ "6. List the **Modelconfigurations** of the **SoftwareVersion**\n",
+ "7. Select a **Modelconfiguration**\n",
+ "8. Show the **Parameters**, **Inputs** and **Outputs** of the **Modelconfiguration**\n"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "### Set up the configuration to interact with the API\n",
+ "\n",
+ "You must import the required modules and obtain the default configuration to interact with the API"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 1,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "from __future__ import print_function\n",
+ "import time\n",
+ "import modelcatalog\n",
+ "from modelcatalog.rest import ApiException\n",
+ "from pprint import pprint\n",
+ "import json\n",
+ "import ast\n",
+ "from pprint import pprint\n",
+ "import texttable as tt\n",
+ "from tools import *\n",
+ "\n",
+ "configuration = modelcatalog.Configuration()"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "Define the user to query the resources"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 2,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "# create an instance of the API class\n",
+ "username = 'mint@isi.edu' # str | The user name for login"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "## Models"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "### List all the **Models**"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 3,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "'Number of model configurations available: 13'\n"
+ ]
+ }
+ ],
+ "source": [
+ "# create an instance of the API class\n",
+ "api_instance = modelcatalog.ModelApi()\n",
+ "try:\n",
+ " # List all Model entities\n",
+ " models = api_instance.models_get(username=username)\n",
+ " pprint(\"Number of model configurations available: {}\".format(len(models)))\n",
+ "except ApiException as e:\n",
+ " print(\"Exception when calling ModelApi->models_get: %s\\n\" % e)"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 4,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "[{'author': ['https://w3id.org/okn/i/mint/kemanian_armen'],\n",
+ " 'date_created': ['2016'],\n",
+ " 'description': ['Cycles simulates the productivity and the water,carbon and '\n",
+ " 'nitrogen balance of soil-crop systems subject to climate '\n",
+ " 'conditions and a large array of management constraints. '\n",
+ " 'Overall the model is set up to be daily. Some processes such '\n",
+ " 'as water balance are temporally nested (subdaily)\\n'\n",
+ " '.'],\n",
+ " 'has_assumption': ['The simulation unit in Cycles is a field with a single '\n",
+ " 'soil (soil file) that is layered (user defined number of '\n",
+ " 'layers) exposed to a daily weather (weather file) and '\n",
+ " 'subject to operations (operations file) that control soil '\n",
+ " 'properties; vegetation properties (crop file) and surface '\n",
+ " 'residue properties. Variables in weather file are '\n",
+ " 'considered rigid forcings. Surface conditions do not '\n",
+ " 'alter air temperature or moisture. Soil is connected to '\n",
+ " 'the residues; aboveground living biomass; air; and '\n",
+ " 'radiation from the atmosphere; and with the bottom of the '\n",
+ " 'profile. There is no lateral water or solutes movement '\n",
+ " 'within the soil profile. When running stand alone; runoff '\n",
+ " 'and percolation water simply leaves the simulation unit. '\n",
+ " 'Vegetation can be composed of monocultures (single '\n",
+ " 'species) or multiple species. The parameters describing '\n",
+ " 'each plant of the community are described in the crop '\n",
+ " 'file. The operations file allows multiple types of '\n",
+ " 'interventions organized as tillage; fertilization; and '\n",
+ " 'planting events. Operations like kill crop are part of '\n",
+ " 'tillage. To enable coupling with other models; Cycles can '\n",
+ " 'be set to replace (re-initialize) internally calculated '\n",
+ " 'variable with external inputs. For example; infiltration '\n",
+ " 'can be an input from the PIHM model; soil moisture can be '\n",
+ " 'reset based on observations or data from other models. '\n",
+ " 'This flexibility extends to all state variables. '\n",
+ " 'Re-initialization algorithm can break the mass balance '\n",
+ " 'and is not recommended unless the goal overrides mass or '\n",
+ " 'energy balance concerns. Overall the model is set up to '\n",
+ " 'be daily. Some processes such as water balance are '\n",
+ " 'temporally nested (subdaily)'],\n",
+ " 'has_contact_person': [{'id': 'https://w3id.org/okn/i/mint/kemanian_armen',\n",
+ " 'type': 'sd:Person'}],\n",
+ " 'has_documentation': ['https://plantscience.psu.edu/research/labs/kemanian/models-and-tools/cycles'],\n",
+ " 'has_download_url': ['https://github.com/PSUmodeling/Cycles'],\n",
+ " 'has_example': ['#### Below is an illustrative example on how to use Cycles.\\n'\n",
+ " '---\\n'\n",
+ " 'General instructions: When using the Cycles AgroEcosystems '\n",
+ " 'Model in any region, you should follow the steps indicated '\n",
+ " 'below :\\n'\n",
+ " '\\n'\n",
+ " '1) Find your field location using a map. Cycles is a '\n",
+ " 'point-based model, and you will need information about the '\n",
+ " 'soil and weather for the point being simulated.\\n'\n",
+ " '\\n'\n",
+ " '2) [Expert users/modelers] Check the default control '\n",
+ " 'properties. These can be found in the Cycles control file. '\n",
+ " 'In the MINT configuration of Cycles, this file is not '\n",
+ " 'exposed, but can be found by downloading the component and '\n",
+ " 'looking at the technical details.\\n'\n",
+ " ' \\n'\n",
+ " '3) Check the soil values for the chosen location (by default '\n",
+ " 'Cyles uses '\n",
+ " '[GSSURGO](https://www.nrcs.usda.gov/wps/portal/nrcs/detail/soils/home/?cid=nrcs142p2_053628)) '\n",
+ " 'properties from your field location.\\n'\n",
+ " ' \\n'\n",
+ " '4) Select the weather location (by default Cycles tries to '\n",
+ " 'use the closest GLDAS grid) for your field location. A '\n",
+ " 'python script is used to read GLDAS netCDF4 files, aggregate '\n",
+ " 'subdaily GLDAS forcing data to daily resolution, and output '\n",
+ " 'the daily variables in text format to be used by Cycles.\\n'\n",
+ " ' \\n'\n",
+ " '5) **[Expert users/modelers]** Create operations for your '\n",
+ " 'field location using the Operation Panel and/or Timeline. In '\n",
+ " 'the MINT configuration of Cycles, this file is not exposed, '\n",
+ " 'but can be found by downloading the component and looking at '\n",
+ " 'the technical details.\\n'\n",
+ " '\\n'\n",
+ " '6) Inspect/visualize model results.\\n'\n",
+ " '\\n'\n",
+ " '\\n'\n",
+ " '**Scenario**: In our case we want to calculate the Seasonal '\n",
+ " 'Crop Production Index for the Pongo basin in South Sudan, '\n",
+ " 'because it provides a fast and robust way of reporting '\n",
+ " 'normalized yields for a given grid point or region. The goal '\n",
+ " 'of the index is to easily segment “years” or “seasons” that '\n",
+ " 'can be problematic for food production, and to provide an '\n",
+ " 'intuitive sense of the magnitude of the problem. The raw '\n",
+ " 'yield outputs might be difficult to interpret for '\n",
+ " 'non-experts, and index is more transparent.\\n'\n",
+ " '\\n'\n",
+ " 'The Seasonal Crop Production Index is based on the ratio of '\n",
+ " 'the yield of a given combination of planting date, '\n",
+ " 'fertilization and weed pressure to the median yield under '\n",
+ " 'such conditions across years:\\n'\n",
+ " ' \\n'\n",
+ " ' * An index = 1 means that the year resembles the median '\n",
+ " 'years, and it is assumed that it represents a neutral '\n",
+ " 'condition (neither local excess or shortage of food '\n",
+ " 'supply). \\n'\n",
+ " ' * An index > 1 means that the local food supply may exceed '\n",
+ " 'the median, and the larger the number the better off the '\n",
+ " 'location. The caveat here is that flooding damage might be '\n",
+ " 'underestimated. As we refine our simulations this limitation '\n",
+ " 'will be lifted.\\n'\n",
+ " ' * An index < 1 means a situation worse than normal, and the '\n",
+ " 'lower the value the worse the situation. It is safe to '\n",
+ " 'assume that this is a reliable indicator of local food '\n",
+ " 'shortage.\\n'\n",
+ " '\\n'\n",
+ " '**Data sources**:When attempting to follow the steps '\n",
+ " 'indicated above, the most difficult challenge is finding '\n",
+ " 'weather and soil files for our target region, as they are '\n",
+ " 'not available in GSSURGO or NLDAS. Therefore we selected the '\n",
+ " 'soils information from '\n",
+ " '[USDA](https://www.nrcs.usda.gov/wps/portal/nrcs/detail/soils/survey/tools/?cid=nrcseprd1407030), '\n",
+ " 'and [Global Land Data Assimilation System '\n",
+ " '(GLDAS)](https://ldas.gsfc.nasa.gov/gldas) for the weather '\n",
+ " 'data. GLDAS has coarser temporal resolution than NLDAS, but '\n",
+ " 'has global coverage which is critical in our use case.\\n'\n",
+ " '\\n'\n",
+ " '**Results**: We executed Cycles in 209 locations we selected '\n",
+ " 'in the Pongo region, selecting \"Maize\" as our target crop '\n",
+ " 'and with multiple fertilization rates and weed fraction. '\n",
+ " 'Figure 1 shows the Variation of the Seasonal Crop Production '\n",
+ " 'Index for maize for one agricultural grid point in the Pongo '\n",
+ " 'Basin, after consolidating the results of each of the '\n",
+ " 'executions. The nitrogen rates represent from low to high '\n",
+ " 'fertilization (for the agronomy minded, 78 to 1250 kg/ha of '\n",
+ " 'raw fertilizer with 32% nitrogen). The 0.4 in the legend '\n",
+ " 'indicates the weed pressure (medium). The planting dates are '\n",
+ " 'not shown here, but an analyst can easily explore their '\n",
+ " 'impact by expanding the data selection. Clearly, years 2011, '\n",
+ " '2016 and 2017 in particular were problematic. \\n'\n",
+ " '\\n'\n",
+ " '\\n'\n",
+ " '\\n'\n",
+ " '**Figure 1: Variation of the Seasonal Crop Production Index '\n",
+ " 'for maize for one agricultural grid point in the Pongo '\n",
+ " 'Basin.**\\n'\n",
+ " '\\n'\n",
+ " '---\\n'\n",
+ " 'For more information on using Cycles, please see '\n",
+ " 'https://www.cycles-model.psu.edu/Cycles/CyclesModel.html.'],\n",
+ " 'has_explanation_diagram': [{'id': 'https://w3id.org/okn/i/mint/cycles_forrester',\n",
+ " 'type': 'Image'}],\n",
+ " 'has_funding': [{'id': 'https://w3id.org/okn/i/mint/CYCLES_funding',\n",
+ " 'type': 'FundingInformation'}],\n",
+ " 'has_grid': [{'id': 'https://w3id.org/okn/i/mint/cycles_grid',\n",
+ " 'type': ['Grid', 'PointBasedGrid']}],\n",
+ " 'has_installation_instructions': ['http://psumodeling.github.io/Cycles/'],\n",
+ " 'has_model_category': ['Agriculture'],\n",
+ " 'has_purpose': ['crop seasonal production'],\n",
+ " 'has_version': [{'id': 'https://w3id.org/okn/i/mint/cycles_v0.9.3_alpha',\n",
+ " 'type': ['SoftwareVersion', 'Theory-GuidedModel']},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/cycles_v0.10.2_alpha',\n",
+ " 'type': ['SoftwareVersion', 'Theory-GuidedModel']},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/cycles_v0.9.4_alpha',\n",
+ " 'type': ['SoftwareVersion', 'Theory-GuidedModel']}],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/CYCLES',\n",
+ " 'keywords': ['Agriculture; crop yield; crop failure; weather; fertilizer; '\n",
+ " 'crop management'],\n",
+ " 'label': ['Cycles'],\n",
+ " 'logo': [{'id': 'https://w3id.org/okn/i/mint/cycles_logo', 'type': 'Image'}],\n",
+ " 'operating_systems': ['Windows;Unix'],\n",
+ " 'publisher': [{'id': 'https://w3id.org/okn/i/mint/penn_state_university',\n",
+ " 'type': 'sd:Organization'}],\n",
+ " 'type': ['Model', 'Theory-GuidedModel'],\n",
+ " 'useful_for_calculating_index': [{'id': 'http://www.geoscienceontology.org/svo/svl/variable#crop_production__seasonal_production_index',\n",
+ " 'type': ['http://www.geoscienceontology.org/svo/svu#Variable',\n",
+ " 'http://www.w3.org/2002/07/owl#NamedIndividual']}],\n",
+ " 'website': ['https://plantscience.psu.edu/research/labs/kemanian/models-and-tools/cycles']},\n",
+ " {'author': ['https://w3id.org/okn/i/mint/khider_deborah'],\n",
+ " 'date_created': ['2018'],\n",
+ " 'description': ['ClimComp is a Python routine for comparing the seasonal '\n",
+ " 'prediction with the average climatology'],\n",
+ " 'had_primary_source': [{'id': 'https://github.com/KnowledgeCaptureAndDiscovery/ClimComp',\n",
+ " 'type': 'Thing'}],\n",
+ " 'has_contact_person': [{'id': 'https://w3id.org/okn/i/mint/khider_deborah',\n",
+ " 'type': 'sd:Person'}],\n",
+ " 'has_documentation': ['https://github.com/KnowledgeCaptureAndDiscovery/ClimComp/blob/master/README.md'],\n",
+ " 'has_download_url': ['https://github.com/KnowledgeCaptureAndDiscovery/ClimComp'],\n",
+ " 'has_funding': [{'id': 'https://w3id.org/okn/i/mint/ClimComp_funding',\n",
+ " 'type': 'FundingInformation'}],\n",
+ " 'has_installation_instructions': ['https://github.com/KnowledgeCaptureAndDiscovery/ClimComp'],\n",
+ " 'has_model_category': ['Weather'],\n",
+ " 'has_source_code': [{'id': 'https://w3id.org/okn/i/mint/climcomp_source',\n",
+ " 'type': 'SourceCode'}],\n",
+ " 'has_version': [{'id': 'https://w3id.org/okn/i/mint/ClimComp_0.0.2',\n",
+ " 'type': ['SoftwareVersion', 'EmpiricalModel']}],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/ClimComp',\n",
+ " 'keywords': ['seasonal climate;climate; climatology;comparison'],\n",
+ " 'label': ['ClimComp'],\n",
+ " 'logo': [{'id': 'https://w3id.org/okn/i/mint/climcomp_logo', 'type': 'Image'}],\n",
+ " 'operating_systems': ['Windows;Unix'],\n",
+ " 'publisher': [{'id': 'https://w3id.org/okn/i/mint/usc',\n",
+ " 'type': 'sd:Organization'}],\n",
+ " 'software_requirements': ['xarray0.11.0;numpy1.15.0;pandas0.23.4;glob2v0.6'],\n",
+ " 'type': ['EmpiricalModel', 'Model'],\n",
+ " 'useful_for_calculating_index': [{'id': 'https://w3id.org/okn/i/mint/ATMOSPHERE_WATER__STANDARDIZED_PRECIPITATION_WETNESS_INDEX',\n",
+ " 'type': ['sdm:Index']},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/LAND_REGION_WATER__STANDARDIZED_PRECIPITATION_EVAPOTRANSPIRATION_DROUGHT_INTENSITY_INDEX',\n",
+ " 'type': ['sdm:Index']}],\n",
+ " 'website': ['https://github.com/KnowledgeCaptureAndDiscovery/ClimComp']},\n",
+ " {'author': ['https://w3id.org/okn/i/mint/khider_deborah'],\n",
+ " 'date_created': ['2019'],\n",
+ " 'date_published': ['2019'],\n",
+ " 'description': ['Model to calculate various drought indices from '\n",
+ " 'precipitation/temperature data.'],\n",
+ " 'had_primary_source': [{'id': 'https://github.com/mintproject/droughtIndices/',\n",
+ " 'type': 'Thing'}],\n",
+ " 'has_contact_person': [{'id': 'https://w3id.org/okn/i/mint/khider_deborah',\n",
+ " 'type': 'sd:Person'}],\n",
+ " 'has_documentation': ['https://github.com/mintproject/droughtIndices/blob/master/README.md'],\n",
+ " 'has_download_url': ['https://github.com/mintproject/droughtIndices'],\n",
+ " 'has_installation_instructions': ['https://github.com/mintproject/droughtIndices/blob/master/README.md'],\n",
+ " 'has_model_category': ['Hydrology'],\n",
+ " 'has_purpose': ['drought indices calculation'],\n",
+ " 'has_version': [{'id': 'https://w3id.org/okn/i/mint/dsi_1.0',\n",
+ " 'type': ['SoftwareVersion', 'EmpiricalModel']}],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/DSI',\n",
+ " 'keywords': ['hydrology; drought; index'],\n",
+ " 'label': ['Drought Severity Index model'],\n",
+ " 'license': ['https://github.com/mintproject/droughtIndices/blob/master/README.md'],\n",
+ " 'logo': [{'id': 'https://w3id.org/okn/i/mint/dsi_logo', 'type': 'Image'}],\n",
+ " 'operating_systems': ['Unix'],\n",
+ " 'software_requirements': ['Package requirements:\\n'\n",
+ " '\\n'\n",
+ " ' xarray - 0.14.1\\n'\n",
+ " ' dask - 2.2.0\\n'\n",
+ " ' netcdf4 - 1.4.2\\n'\n",
+ " ' bottleneck - 1.2.1\\n'\n",
+ " ' pandas - 0.25.3\\n'\n",
+ " ' numpy - 1.17.4\\n'\n",
+ " ' climate-indices - 1.0.6 Install this package '\n",
+ " 'from source (not pip) -> '\n",
+ " 'https://github.com/monocongo/climate_indices\\n'\n",
+ " ' cftime - 1.0.4.2\\n'\n",
+ " ' cartopy - 0.17.0 Install using conda conda '\n",
+ " 'install -c conda-forge cartopy\\n'\n",
+ " ' matplotlib - 3.1.0\\n'\n",
+ " ' imageio - 2.6.1\\n'\n",
+ " ' imageio-ffmpeg - 0.3.0'],\n",
+ " 'type': ['EmpiricalModel', 'Model'],\n",
+ " 'useful_for_calculating_index': [{'id': 'https://w3id.org/okn/i/mint/EVAPORATION_VOLUME_FLUX_INDEX',\n",
+ " 'type': ['sdm:Index']},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/ATMOSPHERE_WATER__PRECIPITATION_EVAPOTRANSPIRATION_STANDARDIZED_INDEX',\n",
+ " 'type': ['sdm:Index']},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/ATMOSPHERE_WATER__PRECIPITATION_STANDARDIZED_INDEX',\n",
+ " 'type': ['sdm:Index']}]},\n",
+ " {'author': [{'id': 'https://w3id.org/okn/i/mint/porter_cheryl',\n",
+ " 'type': 'sd:Person'},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/white_jeff',\n",
+ " 'type': 'sd:Person'},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/shelia_vakhtang',\n",
+ " 'type': 'sd:Person'},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/boote_ken',\n",
+ " 'type': 'sd:Person'},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/singh_upendra',\n",
+ " 'type': 'sd:Person'},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/hoogenboom_gerrit',\n",
+ " 'type': 'sd:Person'}],\n",
+ " 'citation': ['Hoogenboom; G.; C.H. Porter; V. Shelia; K.J. Boote; U. Singh; '\n",
+ " 'J.W. White; L.A. Hunt; R. Ogoshi; J.I. Lizaso; J. Koo; S. '\n",
+ " 'Asseng; A. Singels; L.P. Moreno; and J.W. Jones. 2019. Decision '\n",
+ " 'Support System for Agrotechnology Transfer (DSSAT) Version '\n",
+ " '4.7.5\" (https://DSSAT.net). DSSAT Foundation; Gainesville; '\n",
+ " 'Florida; USA'],\n",
+ " 'date_created': ['1989'],\n",
+ " 'description': ['Decision Support System for Agrotechnology Transfer (DSSAT) '\n",
+ " 'is software application program that comprises dynamic crop '\n",
+ " 'growth simulation models for over 40 crops. DSSAT is '\n",
+ " 'supported by a range of utilities and applications for '\n",
+ " 'weather, soil, genetic, crop management and observational '\n",
+ " 'experimental data. Includes example data sets for all crop '\n",
+ " 'models. The crop simulation models simulate growth, '\n",
+ " 'development and yield as a function of the '\n",
+ " 'soil-plant-atmosphere dynamics (https://dssat.net/. 2019)'],\n",
+ " 'had_primary_source': [{'id': 'https://dssat.net/', 'type': 'Thing'}],\n",
+ " 'has_documentation': ['https://dssat.net'],\n",
+ " 'has_download_url': ['https://apps.agapps.org/ide/serial/index.php/request?sft=3'],\n",
+ " 'has_funding': [{'id': 'https://w3id.org/okn/i/mint/DSSAT_funding',\n",
+ " 'type': 'FundingInformation'}],\n",
+ " 'has_model_category': ['Agriculture'],\n",
+ " 'has_version': [{'id': 'https://w3id.org/okn/i/mint/DSSAT_4.7',\n",
+ " 'type': ['SoftwareVersion', 'Theory-GuidedModel']}],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/DSSAT',\n",
+ " 'keywords': ['Decision Support System; Agrotechnology; crop growth '\n",
+ " 'simulation; weather; soil; genetic; crop '\n",
+ " 'management;soil-plant-atmosphere dynamics'],\n",
+ " 'label': ['Decision Support System for Agrotechnology Transfer (DSSAT)'],\n",
+ " 'logo': [{'id': 'https://w3id.org/okn/i/mint/dssat_logo', 'type': 'Image'}],\n",
+ " 'operating_systems': ['Windows;Unix'],\n",
+ " 'publisher': [{'id': 'https://w3id.org/okn/i/mint/dssat_foundation',\n",
+ " 'type': 'sd:Organization'}],\n",
+ " 'reference_publication': ['Hoogenboom; G.; C.H. Porter; V. Shelia; K.J. '\n",
+ " 'Boote; U. Singh; J.W. White; L.A. Hunt; R. Ogoshi; '\n",
+ " 'J.I. Lizaso; J. Koo; S. Asseng; A. Singels; L.P. '\n",
+ " 'Moreno; and J.W. Jones. 2019. Decision Support '\n",
+ " 'System for Agrotechnology Transfer (DSSAT) Version '\n",
+ " '4.7.5\" (https://DSSAT.net). DSSAT Foundation; '\n",
+ " 'Gainesville; Florida; USA'],\n",
+ " 'type': ['Model', 'Theory-GuidedModel'],\n",
+ " 'website': ['https://dssat.net/']},\n",
+ " {'author': [{'id': 'https://w3id.org/okn/i/mint/cobourn_kelly',\n",
+ " 'type': 'sd:Person'}],\n",
+ " 'date_created': ['2018'],\n",
+ " 'description': ['The Aggregate crop supply response model (EACS) describes an '\n",
+ " 'aggregate crop supply response model for a region (tested '\n",
+ " 'for South Sudan). This is a regional-scale aggregate model '\n",
+ " 'of agricultural supply for a specified set of crops '\n",
+ " '(cassava, groundnuts, maize, sesame seed, and sorghum).'],\n",
+ " 'has_assumption': ['The model calibrates the parameters of a constant '\n",
+ " 'elasticity of substitution (CES) production function and '\n",
+ " 'linear cost function using the positive mathematical '\n",
+ " 'programming (PMP) method. Calibration relies on observed '\n",
+ " 'data on agricultural input use (land and fertilizer) and '\n",
+ " 'crop yields. Markets are assumed complete.'],\n",
+ " 'has_example': ['#### Below is a brief illustrative example to understand how '\n",
+ " 'this model can be used in MINT.\\n'\n",
+ " '---\\n'\n",
+ " '**Scenario**: The South Sudan government plans to implement '\n",
+ " 'a regional fertilizer subsidy program to help the farmers in '\n",
+ " 'Pongo Basin area to achieve a higher level of yield and '\n",
+ " 'alleviate the food insecurity issue. The rate of fertilizer '\n",
+ " 'subsidy has not yet decided. \\n'\n",
+ " '\\n'\n",
+ " 'An analyst can use EACS within MINT to simulate how '\n",
+ " 'different levels of fertilizer subsidy rate (ranging from '\n",
+ " '10% to 50%, fully subsidized) would lead to different levels '\n",
+ " 'of output variables such as production and land use for each '\n",
+ " 'type of crops considered in the model. Based on the '\n",
+ " 'simulation results, analysts can decide what’s the optimal '\n",
+ " 'rate of fertilizer subsidy rate they want to apply in '\n",
+ " 'reality. The economic model consists of a numerical '\n",
+ " 'simulation of a non-linear constrained optimization problem '\n",
+ " 'that is calibrated to reflect observed decision-making in '\n",
+ " 'the study region. The calibration approach uses Positive '\n",
+ " 'Mathematical Programming (PMP), which ensures that the '\n",
+ " 'simulation model reflects unobserved constraints (e.g., '\n",
+ " 'access to credit, labor availability, crop rotation '\n",
+ " 'practices) that affect decisions about agricultural '\n",
+ " 'production. By varying related parameters (prices, '\n",
+ " 'land/fertilizer cost) one at a time between -50 and 50 '\n",
+ " '(increment by 10) for each crop (cassava, sorghum, maize, '\n",
+ " 'groundnuts, and sesame), simulated crop production results '\n",
+ " 'are generated to predict how farmers react to potential '\n",
+ " 'economic condition changes.\\n'\n",
+ " '\\n'\n",
+ " 'The model is an aggregate and represents decision-making by '\n",
+ " 'all agricultural households in the study region. The model '\n",
+ " 'predicts agricultural production, taking into account the '\n",
+ " 'behavioral response of farming households to changes in '\n",
+ " 'environmental, economic, and policy drivers. Output '\n",
+ " 'variables include the total amount of land in agricultural '\n",
+ " 'production, the amount of land and fertilizer used per unit '\n",
+ " 'area in the cultivation of each of the region’s crops, '\n",
+ " 'average crop yields, and net revenues earned in agricultural '\n",
+ " 'production. For the Pongo Basin in South Sudan, the model '\n",
+ " 'generates these output variables for maize, cassava, '\n",
+ " 'sorghum, groundnuts, and sesame seed crops.\\n'\n",
+ " '\\n'\n",
+ " 'In our scenario, analysts are trying to determine an optimal '\n",
+ " 'fertilizer subsidy rate for farmers in Pongo Basin to '\n",
+ " 'promote crop yield in 2017 lean season. The fertilizer '\n",
+ " 'subsidy rate can vary from 10% to 50%. \\n'\n",
+ " 'Initially, the baseline simulated crop yield and production '\n",
+ " 'are displayed in Figure 1: \\n'\n",
+ " '\\n'\n",
+ " '\\n'\n",
+ " '\\n'\n",
+ " '\\n'\n",
+ " '**Figure 1: Estimated baseline yield and production per '\n",
+ " 'crop**\\n'\n",
+ " '\\n'\n",
+ " '\\n'\n",
+ " 'By imposing a 20% fertilizer subsidy, we expect the farmers '\n",
+ " 'to use more fertilizer as inputs for some crops thus leading '\n",
+ " 'to higher yield and production level and eventually higher '\n",
+ " 'revenue level and alleviate the food insecurity problem in '\n",
+ " 'Pongo Basin area during the 2017 lean season. By using EACS, '\n",
+ " 'the simulated yield and production level after imposing the '\n",
+ " 'intervention (i.e., 20% decrease in fertilizer cost for all '\n",
+ " 'crops, assuming the fertilizer subsidy applies to all crops '\n",
+ " 'within this area) is displayed in Figure 2.\\n'\n",
+ " '\\n'\n",
+ " '\\n'\n",
+ " '\\n'\n",
+ " '**Figure 2: Estimated yield and production per crop with a '\n",
+ " '20% decrease in fertilizer cost for all crops**\\n'\n",
+ " ' \\n'\n",
+ " 'By comparing the baseline and intervention (20%) outputs, '\n",
+ " 'analysts may find a 20% fertilizer subsidy program lead to '\n",
+ " 'higher yield level for cassava and maize and higher '\n",
+ " 'production level for sorghum. Since the goal of the economic '\n",
+ " 'model is to maximize the total revenue of the farmers within '\n",
+ " 'this area, analysts would see the farmers make new decisions '\n",
+ " 'on fertilizer use and land allocation on different crops '\n",
+ " 'based on different interventions they choose. \\n'\n",
+ " '\\n'\n",
+ " 'Under the same logic, analysts can run similar simulations '\n",
+ " 'for 10%. 30%, 40% and 50% fertilizer subsidy interventions '\n",
+ " 'and check the new outcomes. We display only two outcome '\n",
+ " 'variables of Economic model: Yield and Total Production. '\n",
+ " 'Extra outcome variables such as land use, fertilizer '\n",
+ " 'application rate and total fertilizer use are also available '\n",
+ " 'for analysts to check and compare within in the MINT '\n",
+ " 'system. \\n'\n",
+ " '\\n'\n",
+ " 'By running multiple simulations with different economic '\n",
+ " 'interventions, analysts would have a general idea of how the '\n",
+ " 'proposed policy may impact the agricultural and economic '\n",
+ " 'outcomes of their interest area. The economic model outcome '\n",
+ " 'variables can also help them to further calculate the cost '\n",
+ " 'and benefit of the potential policy and finalize their '\n",
+ " 'decisions on policy-making. \\n'\n",
+ " '\\n'\n",
+ " '**Data sources**: In this scenario, the model was configured '\n",
+ " 'using Food and Agriculture Organization 2015 production data '\n",
+ " 'for baseline land use, yield and production level '\n",
+ " '(http://www.fao.org/faostat). \\n'\n",
+ " ' Crop price data are World Food Programme database '\n",
+ " '(https://data.humdata.org/dataset/wfp-food-prices-for-south-sudan) '\n",
+ " 'and estimated elasticities from related literatures. \\n'\n",
+ " '\\n'\n",
+ " 'The model was calibrated from national/regional observed '\n",
+ " 'data on land use and crop production level for behavior '\n",
+ " 'parameters, to produce optimal simulation outputs under '\n",
+ " 'various adjustments to variables within the model.'],\n",
+ " 'has_funding': [{'id': 'https://w3id.org/okn/i/mint/ECONOMIC_AGGREGATE_CROP_SUPPLY_funding',\n",
+ " 'type': 'FundingInformation'}],\n",
+ " 'has_grid': [{'id': 'https://w3id.org/okn/i/mint/econ_grid',\n",
+ " 'type': ['Grid', 'PointBasedGrid']}],\n",
+ " 'has_model_category': ['Economy'],\n",
+ " 'has_purpose': ['optimal fertilizing rates; estimated yield'],\n",
+ " 'has_version': [{'id': 'https://w3id.org/okn/i/mint/EACS_2.0',\n",
+ " 'type': ['SoftwareVersion', 'Theory-GuidedModel']},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/EACS_6.1',\n",
+ " 'type': ['SoftwareVersion', 'Theory-GuidedModel']},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/EACS_7',\n",
+ " 'type': ['SoftwareVersion', 'Theory-GuidedModel']},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/EACS_6.0',\n",
+ " 'type': ['SoftwareVersion', 'Theory-GuidedModel']}],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/ECONOMIC_AGGREGATE_CROP_SUPPLY',\n",
+ " 'keywords': ['economy; land use; crop production; fertilizer costs'],\n",
+ " 'label': ['Economic aggregate crop supply response model (EACS)'],\n",
+ " 'logo': [{'id': 'https://w3id.org/okn/i/mint/eacs_logo', 'type': 'Image'}],\n",
+ " 'operating_systems': ['Windows;Unix'],\n",
+ " 'publisher': [{'id': 'https://w3id.org/okn/i/mint/virginia_tech',\n",
+ " 'type': 'sd:Organization'}],\n",
+ " 'type': ['Model', 'Theory-GuidedModel']},\n",
+ " {'author': ['https://w3id.org/okn/i/mint/khider_deborah'],\n",
+ " 'date_created': ['2019'],\n",
+ " 'date_published': ['2019'],\n",
+ " 'description': ['This Python model calculates a flood severity index based on '\n",
+ " 'the annual maxima of volumetric flow for the period '\n",
+ " '1981-2017 obtained from the GloFAS data '\n",
+ " '(http://www.globalfloods.eu/). The thresholds were estimated '\n",
+ " 'from a Gumbel distribution using the methods of L-moments. '\n",
+ " 'The severity is based on a 2-yr return period (medium), 5-yr '\n",
+ " 'return period (high), and 20-yr return period (severe).'],\n",
+ " 'had_primary_source': [{'id': 'https://github.com/mintproject/FloodSeverityIndex',\n",
+ " 'type': 'Thing'}],\n",
+ " 'has_contact_person': [{'id': 'https://w3id.org/okn/i/mint/khider_deborah',\n",
+ " 'type': 'sd:Person'}],\n",
+ " 'has_documentation': ['https://github.com/mintproject/FloodSeverityIndex/blob/master/README.md'],\n",
+ " 'has_download_url': ['https://github.com/mintproject/FloodSeverityIndex'],\n",
+ " 'has_grid': [{'id': 'https://w3id.org/okn/i/mint/fsi_grid',\n",
+ " 'type': ['Grid', 'SpatiallyDistributedGrid']}],\n",
+ " 'has_installation_instructions': ['https://github.com/mintproject/FloodSeverityIndex/blob/master/README.md'],\n",
+ " 'has_model_category': ['Hydrology'],\n",
+ " 'has_purpose': ['flood severity index calculation'],\n",
+ " 'has_source_code': [{'id': 'https://w3id.org/okn/i/mint/fsi_source',\n",
+ " 'type': 'SourceCode'}],\n",
+ " 'has_version': [{'id': 'https://w3id.org/okn/i/mint/fsi_1.0',\n",
+ " 'type': ['SoftwareVersion', 'EmpiricalModel']}],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/FSI',\n",
+ " 'keywords': ['hydrology; flood; index'],\n",
+ " 'label': ['Flood Severity Index model'],\n",
+ " 'license': ['https://github.com/mintproject/FloodSeverityIndex/blob/master/LICENSE'],\n",
+ " 'logo': [{'id': 'https://w3id.org/okn/i/mint/fsi_logo', 'type': 'Image'}],\n",
+ " 'operating_systems': ['Unix'],\n",
+ " 'software_requirements': [' xarray = 0.12.1 (Do not update to the latest '\n",
+ " 'version); numpy; cartopy; panda; '\n",
+ " 'matplotlib; imageio\\n'],\n",
+ " 'type': ['Model', 'EmpiricalModel'],\n",
+ " 'useful_for_calculating_index': [{'id': 'http://www.geoscienceontology.org/svo/svl/variable#channel%40context%7Ein_%28water_flowing%29__flood_volume-flux_severity_index',\n",
+ " 'type': ['http://www.geoscienceontology.org/svo/svu#Variable',\n",
+ " 'http://www.w3.org/2002/07/owl#NamedIndividual']}]},\n",
+ " {'author': [{'id': 'https://w3id.org/okn/i/mint/taborton_david',\n",
+ " 'type': 'sd:Person'}],\n",
+ " 'date_created': ['2010'],\n",
+ " 'description': ['The Height Above the Nearest Drainage (HAND) is a model that '\n",
+ " 'normalizes topography according to the local relative '\n",
+ " 'heights found along a given drainage network. Model output '\n",
+ " 'shows a high correlation with the depth of the water table '\n",
+ " 'in a region and provide an accurate spatial representation '\n",
+ " 'of soil water environments. HAND takes as input a Digital '\n",
+ " 'Elevation Map of a given region, producing as outputa '\n",
+ " 'normalized draining potential (or relative vertical '\n",
+ " 'flowpath-distance) to the nearest drainages.'],\n",
+ " 'had_primary_source': [{'id': 'https://www.hydroshare.org/resource/c17a0da1bd1f4489b4e72e0eaf2ae475/',\n",
+ " 'type': 'Thing'}],\n",
+ " 'has_documentation': ['http://hydrology.usu.edu/taudem/taudem5/documentation.html'],\n",
+ " 'has_download_url': ['https://github.com/dtarb/TauDEM'],\n",
+ " 'has_explanation_diagram': [{'id': 'https://w3id.org/okn/i/mint/hand_explanation',\n",
+ " 'type': 'Image'},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/hand_explanation2',\n",
+ " 'type': 'Image'}],\n",
+ " 'has_funding': [{'id': 'https://w3id.org/okn/i/mint/HAND_funding',\n",
+ " 'type': 'FundingInformation'}],\n",
+ " 'has_model_category': ['Hydrology'],\n",
+ " 'has_purpose': ['Flooding map generation'],\n",
+ " 'has_sample_visualization': [{'id': 'https://w3id.org/okn/i/mint/hand_sample_visualization',\n",
+ " 'type': 'Visualization'},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/hand_travis',\n",
+ " 'type': 'Visualization'}],\n",
+ " 'has_version': [{'id': 'https://w3id.org/okn/i/mint/HANDv1',\n",
+ " 'type': ['SoftwareVersion', 'EmpiricalModel']}],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/HAND',\n",
+ " 'keywords': ['Relative height;Normalization of topography;Gravitational '\n",
+ " 'potential;Draining potential;Flow path;Drainage network'],\n",
+ " 'label': ['Height Above Nearest Drainage'],\n",
+ " 'logo': [{'id': 'https://w3id.org/okn/i/mint/hand_logo', 'type': 'Image'}],\n",
+ " 'operating_systems': ['Windows;Unix'],\n",
+ " 'publisher': [{'id': 'https://w3id.org/okn/i/mint/utah_university',\n",
+ " 'type': 'sd:Organization'}],\n",
+ " 'type': ['EmpiricalModel', 'Model'],\n",
+ " 'useful_for_calculating_index': [{'id': 'https://w3id.org/okn/i/mint/FLOODING_CONTOUR',\n",
+ " 'type': ['sdm:Index']}]},\n",
+ " {'description': ['The Kimetrica model simulates land use'],\n",
+ " 'has_funding': [{'id': 'https://w3id.org/okn/i/mint/KIMETRICA_LAND_USE_funding',\n",
+ " 'type': 'FundingInformation'}],\n",
+ " 'has_model_category': ['Land Use'],\n",
+ " 'has_version': [{'id': 'https://w3id.org/okn/i/mint/kimetrica_0.0',\n",
+ " 'type': 'SoftwareVersion'}],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/KIMETRICA_LAND_USE',\n",
+ " 'label': ['Kimetrica land use model'],\n",
+ " 'logo': [{'id': 'https://w3id.org/okn/i/mint/kimetrica_logo',\n",
+ " 'type': 'Image'}],\n",
+ " 'publisher': [{'id': 'https://w3id.org/okn/i/mint/kimetrica',\n",
+ " 'type': 'sd:Organization'}],\n",
+ " 'type': ['Model']},\n",
+ " {'author': ['https://w3id.org/okn/i/mint/usgs'],\n",
+ " 'citation': ['Harbaugh; A. W. (2005). MODFLOW-2005; the US Geological Survey '\n",
+ " 'modular ground-water model: the ground-water flow process (pp. '\n",
+ " '6-A16). Reston; VA: US Department of the Interior; US '\n",
+ " 'Geological Survey.'],\n",
+ " 'date_created': ['1983'],\n",
+ " 'description': ['Modflow is a popular open-source groundwater flow model '\n",
+ " 'distributed by the U.S. Geological survey'],\n",
+ " 'has_documentation': ['https://water.usgs.gov/ogw/modflow/'],\n",
+ " 'has_download_url': ['https://www.usgs.gov/software/modflow-2005-usgs-three-dimensional-finite-difference-ground-water-model'],\n",
+ " 'has_funding': [{'id': 'https://w3id.org/okn/i/mint/MODFLOW_funding',\n",
+ " 'type': 'FundingInformation'}],\n",
+ " 'has_installation_instructions': ['https://water.usgs.gov/water-resources/software/MODFLOW-2005/readme.txt'],\n",
+ " 'has_model_category': ['Hydrology'],\n",
+ " 'has_purpose': ['water budget estimation; total pumping bugdets'],\n",
+ " 'has_version': [{'id': 'https://w3id.org/okn/i/mint/modflow_2005',\n",
+ " 'type': ['SoftwareVersion', 'Theory-GuidedModel']}],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/MODFLOW',\n",
+ " 'keywords': ['groundwater modeling; steady and nonsteady flow; areal '\n",
+ " 'recharge; evapotranspiration; flow to drains; flow through '\n",
+ " 'river beds'],\n",
+ " 'label': ['MODFLOW'],\n",
+ " 'license': ['https://creativecommons.org/publicdomain/zero/1.0/'],\n",
+ " 'logo': [{'id': 'https://w3id.org/okn/i/mint/modflow_logo', 'type': 'Image'}],\n",
+ " 'operating_systems': ['Windows;Unix'],\n",
+ " 'publisher': [{'id': 'https://w3id.org/okn/i/mint/usgs',\n",
+ " 'type': 'sd:Organization'}],\n",
+ " 'reference_publication': ['Harbaugh, A. W. (2005). MODFLOW-2005, the US '\n",
+ " 'Geological Survey modular ground-water model: the '\n",
+ " 'ground-water flow process (pp. 6-A16). Reston, VA: '\n",
+ " 'US Department of the Interior, US Geological '\n",
+ " 'Survey.'],\n",
+ " 'type': ['Model', 'Theory-GuidedModel'],\n",
+ " 'useful_for_calculating_index': [{'id': 'https://w3id.org/okn/i/mint/STREAMFLOW_LOCATION',\n",
+ " 'type': ['sdm:Index']},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/TOTAL_WATER_STORAGE',\n",
+ " 'type': ['sdm:Index']},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/WATER_TABLE__LEVEL_HEIGHT',\n",
+ " 'type': ['sdm:Index']}],\n",
+ " 'website': ['https://www.usgs.gov/mission-areas/water-resources/science/modflow-and-related-programs']},\n",
+ " {'author': [{'id': 'https://w3id.org/okn/i/mint/shu_lele', 'type': 'sd:Person'},\n",
+ " 'https://w3id.org/okn/i/mint/duffy_christopher'],\n",
+ " 'citation': ['Yu; Xuan; Christopher Duffy; Gopal Bhatt; Yuning Shi; L. N. '\n",
+ " 'Leonard; and Mukesh Kumar. \"Real-Time Implementation of the '\n",
+ " 'Penn State Integrated Hydrologic Modeling System: The Shale '\n",
+ " 'Hills Critical Zone Observatory.\" In AGU Fall Meeting '\n",
+ " 'Abstracts; vol. 1; p. 1149. 2010'],\n",
+ " 'date_created': ['2007'],\n",
+ " 'description': ['The Penn State Integrated Hydrologic Modeling System (PIHM) '\n",
+ " 'is a finite volume code used for simulating the distributed '\n",
+ " 'hydrologic states of a given watershed or river basin. PIHM '\n",
+ " 'accounts for many physical processes including: land surface '\n",
+ " 'processes (evaporation- transpiration, canopy interception, '\n",
+ " 'snowmelt) overland/channel flow coupled to groundwater flow. '\n",
+ " 'PIHM can include reservoirs and flow control structures. '\n",
+ " 'PIHM applies adaptive time stepping and uses the method of '\n",
+ " 'lines to solve the system of implicit equations.'],\n",
+ " 'had_primary_source': [{'id': 'http://www.pihm.psu.edu/', 'type': 'Thing'}],\n",
+ " 'has_assumption': ['PIHM uses a finite volume numerical proceedure that '\n",
+ " 'resolves the domain into triangular prisms from bottom of '\n",
+ " 'groundwater to top of canopy.The state variables within '\n",
+ " 'each prism are fully coupled internally and with adjacent '\n",
+ " 'cells such that a mass balance is assured at each cell '\n",
+ " 'and globally across the domain.'],\n",
+ " 'has_contact_person': [{'id': 'https://w3id.org/okn/i/mint/duffy_christopher',\n",
+ " 'type': 'sd:Person'}],\n",
+ " 'has_documentation': ['http://www.pihm.psu.edu'],\n",
+ " 'has_download_url': ['http://www.pihm.psu.edu/pihmgis_downloads.html'],\n",
+ " 'has_example': ['An example of the PIHM Model for the Pongo basin in South '\n",
+ " 'Sudan can be browsed by using the following Notebook '\n",
+ " '(Wolfram Mathematica CDF player is needed to visualize and '\n",
+ " 'change the results of the notebook): '\n",
+ " 'https://files.mint.isi.edu/s/oLw76x6chUNXOc0/download\\n'\n",
+ " '\\n'\n",
+ " 'Alternatively, you may browse the following PDF for a '\n",
+ " 'non-interactive version of the example: '\n",
+ " 'https://files.mint.isi.edu/s/tmn7sRjjPh7BZvK/download'],\n",
+ " 'has_explanation_diagram': [{'id': 'https://w3id.org/okn/i/mint/pihm_forrester',\n",
+ " 'type': 'Image'},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/pihm_explanation_diagram',\n",
+ " 'type': 'Image'}],\n",
+ " 'has_funding': [{'id': 'https://w3id.org/okn/i/mint/PIHM_funding',\n",
+ " 'type': 'FundingInformation'}],\n",
+ " 'has_grid': [{'id': 'https://w3id.org/okn/i/mint/pihm_grid_general',\n",
+ " 'type': ['Grid', 'SpatiallyDistributedGrid']}],\n",
+ " 'has_installation_instructions': ['http://www.pihm.psu.edu/Downloads/Doc/Installation_guide.pdf'],\n",
+ " 'has_model_category': ['Hydrology'],\n",
+ " 'has_purpose': ['surface water modeling; flooding prediction'],\n",
+ " 'has_sample_visualization': [{'id': 'https://w3id.org/okn/i/mint/pihm_sample_Pongo',\n",
+ " 'type': 'Visualization'}],\n",
+ " 'has_source_code': [{'id': 'https://w3id.org/okn/i/mint/pihm_source',\n",
+ " 'type': 'SourceCode'}],\n",
+ " 'has_version': [{'id': 'https://w3id.org/okn/i/mint/pihm_v4',\n",
+ " 'type': ['SoftwareVersion', 'Theory-GuidedModel']},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/pihm_2.2',\n",
+ " 'type': ['SoftwareVersion', 'Theory-GuidedModel']}],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/PIHM',\n",
+ " 'keywords': ['channel routing; surface overland flow; subsurface flow; '\n",
+ " 'interception; snow melt; evapotranspiration; semi-discrete '\n",
+ " 'approach'],\n",
+ " 'label': ['Penn State Integrated Hydrology Model (PIHM)'],\n",
+ " 'license': ['https://creativecommons.org/publicdomain/zero/1.0/'],\n",
+ " 'logo': [{'id': 'https://w3id.org/okn/i/mint/pihm_logo', 'type': 'Image'}],\n",
+ " 'operating_systems': ['Windows; Mac; Linux'],\n",
+ " 'publisher': [{'id': 'https://w3id.org/okn/i/mint/penn_state_university',\n",
+ " 'type': 'sd:Organization'}],\n",
+ " 'reference_publication': ['Yu; Xuan; Christopher Duffy; Gopal Bhatt; Yuning '\n",
+ " 'Shi; L. N. Leonard; and Mukesh Kumar. \"Real-Time '\n",
+ " 'Implementation of the Penn State Integrated '\n",
+ " 'Hydrologic Modeling System: The Shale Hills '\n",
+ " 'Critical Zone Observatory.\" In AGU Fall Meeting '\n",
+ " 'Abstracts; vol. 1; p. 1149. 2010'],\n",
+ " 'short_description': ['The Penn State Integrated Hydrologic Modeling System '\n",
+ " '(PIHM) is a program used for simulating the '\n",
+ " 'distributed hydrolic states of a given watershed.'],\n",
+ " 'software_requirements': ['sundials2.2.0'],\n",
+ " 'type': ['Theory-GuidedModel', 'Model'],\n",
+ " 'useful_for_calculating_index': [{'id': 'http://www.geoscienceontology.org/svo/svl/variable#channel%7Estream%40context%7Ein_%28water%40role%7Emain_flowing%29__flow_duration_index',\n",
+ " 'type': ['http://www.geoscienceontology.org/svo/svu#Variable',\n",
+ " 'http://www.w3.org/2002/07/owl#NamedIndividual']}],\n",
+ " 'website': ['http://www.pihm.psu.edu/index.html']},\n",
+ " {'author': ['https://w3id.org/okn/i/mint/engel_bernard'],\n",
+ " 'citation': ['Bieger; Katrin; Arnold; Jeffrey G.; Rathjens; Hendrik; White; '\n",
+ " 'Michael J.; Bosch; David D.; Allen; Peter M.; Volk; Martin; and '\n",
+ " 'Srinivasan; Raghavan; 2017. Introduction to SWAT+; a Completely '\n",
+ " 'Restructured Version of the Soil and Water Assessment Tool. '\n",
+ " 'Journal of the American Water Resources Association (JAWRA) 53( '\n",
+ " '1): 115-130.'],\n",
+ " 'date_created': ['1993'],\n",
+ " 'description': ['The Soil & Water Assessment Tool (SWAT) is a small watershed '\n",
+ " 'to river basin-scale model used to simulate the quality and '\n",
+ " 'quantity of surface and ground water and predict the '\n",
+ " 'environmental impact of land use; land management practices '\n",
+ " 'and climate change (https://swat.tamu.edu/ 2019)'],\n",
+ " 'had_primary_source': [{'id': 'https://w3id.org/okn/i/mint/https://www.usgs.gov/mission-areas/water-resources/science/modflow-and-related-programs',\n",
+ " 'type': 'Thing'},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/https://en.wikipedia.org/wiki/MODFLOW',\n",
+ " 'type': 'Thing'}],\n",
+ " 'has_documentation': ['https://swat.tamu.edu/docs/'],\n",
+ " 'has_download_url': ['https://plus.swat.tamu.edu/downloads/swatplustools-installer-1.2.0.zip'],\n",
+ " 'has_funding': [{'id': 'https://w3id.org/okn/i/mint/SWAT_funding',\n",
+ " 'type': 'FundingInformation'}],\n",
+ " 'has_grid': [{'id': 'https://w3id.org/okn/i/mint/swat_grid',\n",
+ " 'type': ['Grid']}],\n",
+ " 'has_installation_instructions': ['https://swatplus.gitbook.io/docs/installation'],\n",
+ " 'has_model_category': ['Hydrology'],\n",
+ " 'has_source_code': [{'id': 'https://w3id.org/okn/i/mint/swat_source',\n",
+ " 'type': 'SourceCode'}],\n",
+ " 'has_version': [{'id': 'https://w3id.org/okn/i/mint/swat_1.2.0',\n",
+ " 'type': 'SoftwareVersion'}],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/SWAT',\n",
+ " 'keywords': ['Soil; watershed;surface water; ground water;environmental '\n",
+ " 'impacts; land use; land management; climate change;soil '\n",
+ " 'erosion; source pollution'],\n",
+ " 'label': ['The Soil & Water Assessment Tool (SWAT)'],\n",
+ " 'logo': [{'id': 'https://w3id.org/okn/i/mint/swat_logo', 'type': 'Image'}],\n",
+ " 'operating_systems': ['Windows;Unix'],\n",
+ " 'publisher': [{'id': 'https://w3id.org/okn/i/mint/texas_university',\n",
+ " 'type': 'sd:Organization'}],\n",
+ " 'reference_publication': ['Arnold Jeffrey G. et al. \"SWAT: Model use; '\n",
+ " 'calibration and validation.\" Transactions of the '\n",
+ " 'ASABE 55.4 (2012): 1491-1508.'],\n",
+ " 'short_description': ['SWAT is a river basin scale model developed to '\n",
+ " 'quantify the impact of land management practices in '\n",
+ " 'large and complex watersheds.'],\n",
+ " 'software_requirements': ['QGIS 3'],\n",
+ " 'type': ['Model', 'Theory-GuidedModel'],\n",
+ " 'website': ['https://swat.tamu.edu/']},\n",
+ " {'author': [{'id': 'https://w3id.org/okn/i/mint/peckham_scott',\n",
+ " 'type': 'sd:Person'}],\n",
+ " 'citation': ['Peckham; S. D. \"Geomorphometry and spatial hydrologic '\n",
+ " 'modelling.\" Developments in Soil Science 33 (2009): 579-602.'],\n",
+ " 'contributor': [{'id': 'https://w3id.org/okn/i/mint/bolton_bob',\n",
+ " 'type': 'sd:Person'},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/liljedahl_anna',\n",
+ " 'type': 'sd:Person'},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/hinzman_larry',\n",
+ " 'type': 'sd:Person'},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/over_thomas',\n",
+ " 'type': 'sd:Person'}],\n",
+ " 'date_created': ['2002'],\n",
+ " 'description': ['Topoflow is a powerful spatially-distributed hydrologic '\n",
+ " 'model for various physical processes in a watershed, with '\n",
+ " 'the goal of accurately predicting how various hydrologic '\n",
+ " 'variables will evolve in time in response to climatic '\n",
+ " 'forcings.'],\n",
+ " 'had_primary_source': [{'id': 'https://csdms.colorado.edu/wiki/Model:TopoFlow',\n",
+ " 'type': 'Thing'}],\n",
+ " 'has_contact_person': ['https://w3id.org/okn/i/mint/pecham_scott'],\n",
+ " 'has_documentation': ['https://github.com/peckhams/topoflow/blob/master/docs/'],\n",
+ " 'has_download_url': ['https://csdms.colorado.edu/pub/models/doi-source-code/topoflow-10.1594.IEDA.100174-3.1.0.tar.gz'],\n",
+ " 'has_funding': [{'id': 'https://w3id.org/okn/i/mint/TOPOFLOW_funding',\n",
+ " 'type': 'FundingInformation'}],\n",
+ " 'has_installation_instructions': ['https://csdms.colorado.edu/wiki/Model:TopoFlow'],\n",
+ " 'has_model_category': ['Hydrology'],\n",
+ " 'has_sample_visualization': [{'id': 'https://w3id.org/okn/i/mint/topoflow_vis',\n",
+ " 'type': 'Visualization'}],\n",
+ " 'has_source_code': [{'id': 'https://w3id.org/okn/i/mint/topoflow_source',\n",
+ " 'type': 'SourceCode'}],\n",
+ " 'has_version': [{'id': 'https://w3id.org/okn/i/mint/topoflow_3.6',\n",
+ " 'type': ['SoftwareVersion', 'Theory-GuidedModel']},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/topoflow_3.5',\n",
+ " 'type': ['SoftwareVersion', 'Theory-GuidedModel']}],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/TOPOFLOW',\n",
+ " 'keywords': ['snowmelt;precipitation;evapotranspiration;infiltration;channel/overland '\n",
+ " 'flow;shallow subsurface flow;flow diversions'],\n",
+ " 'label': ['TopoFlow'],\n",
+ " 'logo': [{'id': 'https://w3id.org/okn/i/mint/topoflow_logo', 'type': 'Image'}],\n",
+ " 'operating_systems': ['Windows;Unix'],\n",
+ " 'publisher': [{'id': 'https://w3id.org/okn/i/mint/colorado_university',\n",
+ " 'type': 'sd:Organization'}],\n",
+ " 'reference_publication': ['Peckham; S. D. \"Geomorphometry and spatial '\n",
+ " 'hydrologic modelling.\" Developments in Soil '\n",
+ " 'Science 33 (2009): 579-602.'],\n",
+ " 'software_requirements': ['IDL 6.0 or 6.3'],\n",
+ " 'type': ['Theory-GuidedModel', 'Model'],\n",
+ " 'useful_for_calculating_index': [{'id': 'https://w3id.org/okn/i/mint/DOWNSTREAM_VOLUME_FLOW_RATE',\n",
+ " 'type': ['sdm:Index']}],\n",
+ " 'website': ['https://csdms.colorado.edu/wiki/Model:TopoFlow']},\n",
+ " {'author': ['https://w3id.org/okn/i/mint/somer_philipp',\n",
+ " 'https://w3id.org/okn/i/mint/kaplan_jed'],\n",
+ " 'citation': ['Sommer; P. S. and Kaplan; J. O.: A globally calibrated scheme '\n",
+ " 'for generating daily meteorology from monthly statistics: '\n",
+ " 'Global-WGEN (GWGEN) v1.0; Geosci. Model Dev.; 10; 3771-3791; '\n",
+ " 'DOI: 10.5194/gmd-10-3771-2017; 2017'],\n",
+ " 'date_created': ['2017'],\n",
+ " 'date_published': ['2017'],\n",
+ " 'description': ['WGEN: A global weather generator for daily data derived from '\n",
+ " 'the Global Weather Generator (GWGEN)'],\n",
+ " 'had_primary_source': [{'id': 'https://github.com/ARVE-Research/gwgen',\n",
+ " 'type': 'Thing'}],\n",
+ " 'has_contact_person': [{'id': 'https://w3id.org/okn/i/mint/khider_deborah',\n",
+ " 'type': 'sd:Person'}],\n",
+ " 'has_documentation': ['https://arve-research.github.io/gwgen/'],\n",
+ " 'has_download_url': ['https://github.com/ARVE-Research/gwgen/releases'],\n",
+ " 'has_funding': [{'id': 'https://w3id.org/okn/i/mint/WGEN_funding',\n",
+ " 'type': 'FundingInformation'}],\n",
+ " 'has_installation_instructions': ['https://arve-research.github.io/gwgen/install.html'],\n",
+ " 'has_model_category': ['Weather'],\n",
+ " 'has_version': [{'id': 'https://w3id.org/okn/i/mint/wgen_1.0.1',\n",
+ " 'type': ['SoftwareVersion', 'EmpiricalModel']}],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/WGEN',\n",
+ " 'keywords': ['weather generator; climatology; meteorology; global '\n",
+ " 'meteorological database; temperature; precipitation; cloud '\n",
+ " 'cover; windspeed'],\n",
+ " 'label': ['WGEN'],\n",
+ " 'logo': [{'id': 'https://w3id.org/okn/i/mint/wgen_logo', 'type': 'Image'}],\n",
+ " 'operating_systems': ['Windows;Unix'],\n",
+ " 'type': ['Model', 'EmpiricalModel']}]\n"
+ ]
+ }
+ ],
+ "source": [
+ "pprint(models)"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 5,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "+-------------+----------------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+=============+================================================================+\n",
+ "| description | ['Cycles simulates the productivity and the water,carbon and |\n",
+ "| | nitrogen balance of soil-crop systems subject to climate |\n",
+ "| | conditions and a large array of management constraints. |\n",
+ "| | Overall the model is set up to be daily. Some processes such |\n",
+ "| | as water balance are temporally nested (subdaily)\\n.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/CYCLES |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "\n",
+ "\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+=============+================================================================+\n",
+ "| description | ['Cycles simulates the productivity and the water,carbon and |\n",
+ "| | nitrogen balance of soil-crop systems subject to climate |\n",
+ "| | conditions and a large array of management constraints. |\n",
+ "| | Overall the model is set up to be daily. Some processes such |\n",
+ "| | as water balance are temporally nested (subdaily)\\n.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/CYCLES |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['ClimComp is a Python routine for comparing the seasonal |\n",
+ "| | prediction with the average climatology'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/ClimComp |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "\n",
+ "\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+=============+================================================================+\n",
+ "| description | ['Cycles simulates the productivity and the water,carbon and |\n",
+ "| | nitrogen balance of soil-crop systems subject to climate |\n",
+ "| | conditions and a large array of management constraints. |\n",
+ "| | Overall the model is set up to be daily. Some processes such |\n",
+ "| | as water balance are temporally nested (subdaily)\\n.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/CYCLES |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['ClimComp is a Python routine for comparing the seasonal |\n",
+ "| | prediction with the average climatology'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/ClimComp |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Model to calculate various drought indices from |\n",
+ "| | precipitation/temperature data.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/DSI |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "\n",
+ "\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+=============+================================================================+\n",
+ "| description | ['Cycles simulates the productivity and the water,carbon and |\n",
+ "| | nitrogen balance of soil-crop systems subject to climate |\n",
+ "| | conditions and a large array of management constraints. |\n",
+ "| | Overall the model is set up to be daily. Some processes such |\n",
+ "| | as water balance are temporally nested (subdaily)\\n.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/CYCLES |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['ClimComp is a Python routine for comparing the seasonal |\n",
+ "| | prediction with the average climatology'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/ClimComp |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Model to calculate various drought indices from |\n",
+ "| | precipitation/temperature data.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/DSI |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Decision Support System for Agrotechnology Transfer (DSSAT) |\n",
+ "| | is software application program that comprises dynamic crop |\n",
+ "| | growth simulation models for over 40 crops. DSSAT is supported |\n",
+ "| | by a range of utilities and applications for weather, soil, |\n",
+ "| | genetic, crop management and observational experimental data. |\n",
+ "| | Includes example data sets for all crop models. The crop |\n",
+ "| | simulation models simulate growth, development and yield as a |\n",
+ "| | function of the soil-plant-atmosphere dynamics |\n",
+ "| | (https://dssat.net/. 2019)'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/DSSAT |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "\n",
+ "\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+=============+================================================================+\n",
+ "| description | ['Cycles simulates the productivity and the water,carbon and |\n",
+ "| | nitrogen balance of soil-crop systems subject to climate |\n",
+ "| | conditions and a large array of management constraints. |\n",
+ "| | Overall the model is set up to be daily. Some processes such |\n",
+ "| | as water balance are temporally nested (subdaily)\\n.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/CYCLES |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['ClimComp is a Python routine for comparing the seasonal |\n",
+ "| | prediction with the average climatology'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/ClimComp |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Model to calculate various drought indices from |\n",
+ "| | precipitation/temperature data.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/DSI |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Decision Support System for Agrotechnology Transfer (DSSAT) |\n",
+ "| | is software application program that comprises dynamic crop |\n",
+ "| | growth simulation models for over 40 crops. DSSAT is supported |\n",
+ "| | by a range of utilities and applications for weather, soil, |\n",
+ "| | genetic, crop management and observational experimental data. |\n",
+ "| | Includes example data sets for all crop models. The crop |\n",
+ "| | simulation models simulate growth, development and yield as a |\n",
+ "| | function of the soil-plant-atmosphere dynamics |\n",
+ "| | (https://dssat.net/. 2019)'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/DSSAT |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Aggregate crop supply response model (EACS) describes an |\n",
+ "| | aggregate crop supply response model for a region (tested for |\n",
+ "| | South Sudan). This is a regional-scale aggregate model of |\n",
+ "| | agricultural supply for a specified set of crops (cassava, |\n",
+ "| | groundnuts, maize, sesame seed, and sorghum).'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/ECONOMIC_AGGREGATE_CROP_SUPPLY |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "\n",
+ "\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+=============+================================================================+\n",
+ "| description | ['Cycles simulates the productivity and the water,carbon and |\n",
+ "| | nitrogen balance of soil-crop systems subject to climate |\n",
+ "| | conditions and a large array of management constraints. |\n",
+ "| | Overall the model is set up to be daily. Some processes such |\n",
+ "| | as water balance are temporally nested (subdaily)\\n.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/CYCLES |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['ClimComp is a Python routine for comparing the seasonal |\n",
+ "| | prediction with the average climatology'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/ClimComp |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Model to calculate various drought indices from |\n",
+ "| | precipitation/temperature data.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/DSI |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Decision Support System for Agrotechnology Transfer (DSSAT) |\n",
+ "| | is software application program that comprises dynamic crop |\n",
+ "| | growth simulation models for over 40 crops. DSSAT is supported |\n",
+ "| | by a range of utilities and applications for weather, soil, |\n",
+ "| | genetic, crop management and observational experimental data. |\n",
+ "| | Includes example data sets for all crop models. The crop |\n",
+ "| | simulation models simulate growth, development and yield as a |\n",
+ "| | function of the soil-plant-atmosphere dynamics |\n",
+ "| | (https://dssat.net/. 2019)'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/DSSAT |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Aggregate crop supply response model (EACS) describes an |\n",
+ "| | aggregate crop supply response model for a region (tested for |\n",
+ "| | South Sudan). This is a regional-scale aggregate model of |\n",
+ "| | agricultural supply for a specified set of crops (cassava, |\n",
+ "| | groundnuts, maize, sesame seed, and sorghum).'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/ECONOMIC_AGGREGATE_CROP_SUPPLY |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['This Python model calculates a flood severity index based on |\n",
+ "| | the annual maxima of volumetric flow for the period 1981-2017 |\n",
+ "| | obtained from the GloFAS data (http://www.globalfloods.eu/). |\n",
+ "| | The thresholds were estimated from a Gumbel distribution using |\n",
+ "| | the methods of L-moments. The severity is based on a 2-yr |\n",
+ "| | return period (medium), 5-yr return period (high), and 20-yr |\n",
+ "| | return period (severe).'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/FSI |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "\n",
+ "\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+=============+================================================================+\n",
+ "| description | ['Cycles simulates the productivity and the water,carbon and |\n",
+ "| | nitrogen balance of soil-crop systems subject to climate |\n",
+ "| | conditions and a large array of management constraints. |\n",
+ "| | Overall the model is set up to be daily. Some processes such |\n",
+ "| | as water balance are temporally nested (subdaily)\\n.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/CYCLES |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['ClimComp is a Python routine for comparing the seasonal |\n",
+ "| | prediction with the average climatology'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/ClimComp |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Model to calculate various drought indices from |\n",
+ "| | precipitation/temperature data.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/DSI |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Decision Support System for Agrotechnology Transfer (DSSAT) |\n",
+ "| | is software application program that comprises dynamic crop |\n",
+ "| | growth simulation models for over 40 crops. DSSAT is supported |\n",
+ "| | by a range of utilities and applications for weather, soil, |\n",
+ "| | genetic, crop management and observational experimental data. |\n",
+ "| | Includes example data sets for all crop models. The crop |\n",
+ "| | simulation models simulate growth, development and yield as a |\n",
+ "| | function of the soil-plant-atmosphere dynamics |\n",
+ "| | (https://dssat.net/. 2019)'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/DSSAT |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Aggregate crop supply response model (EACS) describes an |\n",
+ "| | aggregate crop supply response model for a region (tested for |\n",
+ "| | South Sudan). This is a regional-scale aggregate model of |\n",
+ "| | agricultural supply for a specified set of crops (cassava, |\n",
+ "| | groundnuts, maize, sesame seed, and sorghum).'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/ECONOMIC_AGGREGATE_CROP_SUPPLY |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['This Python model calculates a flood severity index based on |\n",
+ "| | the annual maxima of volumetric flow for the period 1981-2017 |\n",
+ "| | obtained from the GloFAS data (http://www.globalfloods.eu/). |\n",
+ "| | The thresholds were estimated from a Gumbel distribution using |\n",
+ "| | the methods of L-moments. The severity is based on a 2-yr |\n",
+ "| | return period (medium), 5-yr return period (high), and 20-yr |\n",
+ "| | return period (severe).'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/FSI |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Height Above the Nearest Drainage (HAND) is a model that |\n",
+ "| | normalizes topography according to the local relative heights |\n",
+ "| | found along a given drainage network. Model output shows a |\n",
+ "| | high correlation with the depth of the water table in a region |\n",
+ "| | and provide an accurate spatial representation of soil water |\n",
+ "| | environments. HAND takes as input a Digital Elevation Map of a |\n",
+ "| | given region, producing as outputa normalized draining |\n",
+ "| | potential (or relative vertical flowpath-distance) to the |\n",
+ "| | nearest drainages.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/HAND |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "\n",
+ "\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+=============+================================================================+\n",
+ "| description | ['Cycles simulates the productivity and the water,carbon and |\n",
+ "| | nitrogen balance of soil-crop systems subject to climate |\n",
+ "| | conditions and a large array of management constraints. |\n",
+ "| | Overall the model is set up to be daily. Some processes such |\n",
+ "| | as water balance are temporally nested (subdaily)\\n.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/CYCLES |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['ClimComp is a Python routine for comparing the seasonal |\n",
+ "| | prediction with the average climatology'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/ClimComp |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Model to calculate various drought indices from |\n",
+ "| | precipitation/temperature data.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/DSI |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Decision Support System for Agrotechnology Transfer (DSSAT) |\n",
+ "| | is software application program that comprises dynamic crop |\n",
+ "| | growth simulation models for over 40 crops. DSSAT is supported |\n",
+ "| | by a range of utilities and applications for weather, soil, |\n",
+ "| | genetic, crop management and observational experimental data. |\n",
+ "| | Includes example data sets for all crop models. The crop |\n",
+ "| | simulation models simulate growth, development and yield as a |\n",
+ "| | function of the soil-plant-atmosphere dynamics |\n",
+ "| | (https://dssat.net/. 2019)'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/DSSAT |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Aggregate crop supply response model (EACS) describes an |\n",
+ "| | aggregate crop supply response model for a region (tested for |\n",
+ "| | South Sudan). This is a regional-scale aggregate model of |\n",
+ "| | agricultural supply for a specified set of crops (cassava, |\n",
+ "| | groundnuts, maize, sesame seed, and sorghum).'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/ECONOMIC_AGGREGATE_CROP_SUPPLY |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['This Python model calculates a flood severity index based on |\n",
+ "| | the annual maxima of volumetric flow for the period 1981-2017 |\n",
+ "| | obtained from the GloFAS data (http://www.globalfloods.eu/). |\n",
+ "| | The thresholds were estimated from a Gumbel distribution using |\n",
+ "| | the methods of L-moments. The severity is based on a 2-yr |\n",
+ "| | return period (medium), 5-yr return period (high), and 20-yr |\n",
+ "| | return period (severe).'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/FSI |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Height Above the Nearest Drainage (HAND) is a model that |\n",
+ "| | normalizes topography according to the local relative heights |\n",
+ "| | found along a given drainage network. Model output shows a |\n",
+ "| | high correlation with the depth of the water table in a region |\n",
+ "| | and provide an accurate spatial representation of soil water |\n",
+ "| | environments. HAND takes as input a Digital Elevation Map of a |\n",
+ "| | given region, producing as outputa normalized draining |\n",
+ "| | potential (or relative vertical flowpath-distance) to the |\n",
+ "| | nearest drainages.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/HAND |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Kimetrica model simulates land use'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/KIMETRICA_LAND_USE |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "\n",
+ "\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+=============+================================================================+\n",
+ "| description | ['Cycles simulates the productivity and the water,carbon and |\n",
+ "| | nitrogen balance of soil-crop systems subject to climate |\n",
+ "| | conditions and a large array of management constraints. |\n",
+ "| | Overall the model is set up to be daily. Some processes such |\n",
+ "| | as water balance are temporally nested (subdaily)\\n.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/CYCLES |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['ClimComp is a Python routine for comparing the seasonal |\n",
+ "| | prediction with the average climatology'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/ClimComp |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Model to calculate various drought indices from |\n",
+ "| | precipitation/temperature data.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/DSI |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Decision Support System for Agrotechnology Transfer (DSSAT) |\n",
+ "| | is software application program that comprises dynamic crop |\n",
+ "| | growth simulation models for over 40 crops. DSSAT is supported |\n",
+ "| | by a range of utilities and applications for weather, soil, |\n",
+ "| | genetic, crop management and observational experimental data. |\n",
+ "| | Includes example data sets for all crop models. The crop |\n",
+ "| | simulation models simulate growth, development and yield as a |\n",
+ "| | function of the soil-plant-atmosphere dynamics |\n",
+ "| | (https://dssat.net/. 2019)'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/DSSAT |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Aggregate crop supply response model (EACS) describes an |\n",
+ "| | aggregate crop supply response model for a region (tested for |\n",
+ "| | South Sudan). This is a regional-scale aggregate model of |\n",
+ "| | agricultural supply for a specified set of crops (cassava, |\n",
+ "| | groundnuts, maize, sesame seed, and sorghum).'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/ECONOMIC_AGGREGATE_CROP_SUPPLY |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['This Python model calculates a flood severity index based on |\n",
+ "| | the annual maxima of volumetric flow for the period 1981-2017 |\n",
+ "| | obtained from the GloFAS data (http://www.globalfloods.eu/). |\n",
+ "| | The thresholds were estimated from a Gumbel distribution using |\n",
+ "| | the methods of L-moments. The severity is based on a 2-yr |\n",
+ "| | return period (medium), 5-yr return period (high), and 20-yr |\n",
+ "| | return period (severe).'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/FSI |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Height Above the Nearest Drainage (HAND) is a model that |\n",
+ "| | normalizes topography according to the local relative heights |\n",
+ "| | found along a given drainage network. Model output shows a |\n",
+ "| | high correlation with the depth of the water table in a region |\n",
+ "| | and provide an accurate spatial representation of soil water |\n",
+ "| | environments. HAND takes as input a Digital Elevation Map of a |\n",
+ "| | given region, producing as outputa normalized draining |\n",
+ "| | potential (or relative vertical flowpath-distance) to the |\n",
+ "| | nearest drainages.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/HAND |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Kimetrica model simulates land use'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/KIMETRICA_LAND_USE |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Modflow is a popular open-source groundwater flow model |\n",
+ "| | distributed by the U.S. Geological survey'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/MODFLOW |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "\n",
+ "\n"
+ ]
+ },
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "+-------------+----------------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+=============+================================================================+\n",
+ "| description | ['Cycles simulates the productivity and the water,carbon and |\n",
+ "| | nitrogen balance of soil-crop systems subject to climate |\n",
+ "| | conditions and a large array of management constraints. |\n",
+ "| | Overall the model is set up to be daily. Some processes such |\n",
+ "| | as water balance are temporally nested (subdaily)\\n.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/CYCLES |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['ClimComp is a Python routine for comparing the seasonal |\n",
+ "| | prediction with the average climatology'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/ClimComp |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Model to calculate various drought indices from |\n",
+ "| | precipitation/temperature data.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/DSI |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Decision Support System for Agrotechnology Transfer (DSSAT) |\n",
+ "| | is software application program that comprises dynamic crop |\n",
+ "| | growth simulation models for over 40 crops. DSSAT is supported |\n",
+ "| | by a range of utilities and applications for weather, soil, |\n",
+ "| | genetic, crop management and observational experimental data. |\n",
+ "| | Includes example data sets for all crop models. The crop |\n",
+ "| | simulation models simulate growth, development and yield as a |\n",
+ "| | function of the soil-plant-atmosphere dynamics |\n",
+ "| | (https://dssat.net/. 2019)'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/DSSAT |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Aggregate crop supply response model (EACS) describes an |\n",
+ "| | aggregate crop supply response model for a region (tested for |\n",
+ "| | South Sudan). This is a regional-scale aggregate model of |\n",
+ "| | agricultural supply for a specified set of crops (cassava, |\n",
+ "| | groundnuts, maize, sesame seed, and sorghum).'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/ECONOMIC_AGGREGATE_CROP_SUPPLY |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['This Python model calculates a flood severity index based on |\n",
+ "| | the annual maxima of volumetric flow for the period 1981-2017 |\n",
+ "| | obtained from the GloFAS data (http://www.globalfloods.eu/). |\n",
+ "| | The thresholds were estimated from a Gumbel distribution using |\n",
+ "| | the methods of L-moments. The severity is based on a 2-yr |\n",
+ "| | return period (medium), 5-yr return period (high), and 20-yr |\n",
+ "| | return period (severe).'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/FSI |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Height Above the Nearest Drainage (HAND) is a model that |\n",
+ "| | normalizes topography according to the local relative heights |\n",
+ "| | found along a given drainage network. Model output shows a |\n",
+ "| | high correlation with the depth of the water table in a region |\n",
+ "| | and provide an accurate spatial representation of soil water |\n",
+ "| | environments. HAND takes as input a Digital Elevation Map of a |\n",
+ "| | given region, producing as outputa normalized draining |\n",
+ "| | potential (or relative vertical flowpath-distance) to the |\n",
+ "| | nearest drainages.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/HAND |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Kimetrica model simulates land use'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/KIMETRICA_LAND_USE |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Modflow is a popular open-source groundwater flow model |\n",
+ "| | distributed by the U.S. Geological survey'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/MODFLOW |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Penn State Integrated Hydrologic Modeling System (PIHM) |\n",
+ "| | is a finite volume code used for simulating the distributed |\n",
+ "| | hydrologic states of a given watershed or river basin. PIHM |\n",
+ "| | accounts for many physical processes including: land surface |\n",
+ "| | processes (evaporation- transpiration, canopy interception, |\n",
+ "| | snowmelt) overland/channel flow coupled to groundwater flow. |\n",
+ "| | PIHM can include reservoirs and flow control structures. PIHM |\n",
+ "| | applies adaptive time stepping and uses the method of lines to |\n",
+ "| | solve the system of implicit equations.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/PIHM |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "\n",
+ "\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+=============+================================================================+\n",
+ "| description | ['Cycles simulates the productivity and the water,carbon and |\n",
+ "| | nitrogen balance of soil-crop systems subject to climate |\n",
+ "| | conditions and a large array of management constraints. |\n",
+ "| | Overall the model is set up to be daily. Some processes such |\n",
+ "| | as water balance are temporally nested (subdaily)\\n.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/CYCLES |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['ClimComp is a Python routine for comparing the seasonal |\n",
+ "| | prediction with the average climatology'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/ClimComp |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Model to calculate various drought indices from |\n",
+ "| | precipitation/temperature data.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/DSI |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Decision Support System for Agrotechnology Transfer (DSSAT) |\n",
+ "| | is software application program that comprises dynamic crop |\n",
+ "| | growth simulation models for over 40 crops. DSSAT is supported |\n",
+ "| | by a range of utilities and applications for weather, soil, |\n",
+ "| | genetic, crop management and observational experimental data. |\n",
+ "| | Includes example data sets for all crop models. The crop |\n",
+ "| | simulation models simulate growth, development and yield as a |\n",
+ "| | function of the soil-plant-atmosphere dynamics |\n",
+ "| | (https://dssat.net/. 2019)'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/DSSAT |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Aggregate crop supply response model (EACS) describes an |\n",
+ "| | aggregate crop supply response model for a region (tested for |\n",
+ "| | South Sudan). This is a regional-scale aggregate model of |\n",
+ "| | agricultural supply for a specified set of crops (cassava, |\n",
+ "| | groundnuts, maize, sesame seed, and sorghum).'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/ECONOMIC_AGGREGATE_CROP_SUPPLY |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['This Python model calculates a flood severity index based on |\n",
+ "| | the annual maxima of volumetric flow for the period 1981-2017 |\n",
+ "| | obtained from the GloFAS data (http://www.globalfloods.eu/). |\n",
+ "| | The thresholds were estimated from a Gumbel distribution using |\n",
+ "| | the methods of L-moments. The severity is based on a 2-yr |\n",
+ "| | return period (medium), 5-yr return period (high), and 20-yr |\n",
+ "| | return period (severe).'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/FSI |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Height Above the Nearest Drainage (HAND) is a model that |\n",
+ "| | normalizes topography according to the local relative heights |\n",
+ "| | found along a given drainage network. Model output shows a |\n",
+ "| | high correlation with the depth of the water table in a region |\n",
+ "| | and provide an accurate spatial representation of soil water |\n",
+ "| | environments. HAND takes as input a Digital Elevation Map of a |\n",
+ "| | given region, producing as outputa normalized draining |\n",
+ "| | potential (or relative vertical flowpath-distance) to the |\n",
+ "| | nearest drainages.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/HAND |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Kimetrica model simulates land use'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/KIMETRICA_LAND_USE |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Modflow is a popular open-source groundwater flow model |\n",
+ "| | distributed by the U.S. Geological survey'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/MODFLOW |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Penn State Integrated Hydrologic Modeling System (PIHM) |\n",
+ "| | is a finite volume code used for simulating the distributed |\n",
+ "| | hydrologic states of a given watershed or river basin. PIHM |\n",
+ "| | accounts for many physical processes including: land surface |\n",
+ "| | processes (evaporation- transpiration, canopy interception, |\n",
+ "| | snowmelt) overland/channel flow coupled to groundwater flow. |\n",
+ "| | PIHM can include reservoirs and flow control structures. PIHM |\n",
+ "| | applies adaptive time stepping and uses the method of lines to |\n",
+ "| | solve the system of implicit equations.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/PIHM |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Soil & Water Assessment Tool (SWAT) is a small watershed |\n",
+ "| | to river basin-scale model used to simulate the quality and |\n",
+ "| | quantity of surface and ground water and predict the |\n",
+ "| | environmental impact of land use; land management practices |\n",
+ "| | and climate change (https://swat.tamu.edu/ 2019)'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/SWAT |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "\n",
+ "\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+=============+================================================================+\n",
+ "| description | ['Cycles simulates the productivity and the water,carbon and |\n",
+ "| | nitrogen balance of soil-crop systems subject to climate |\n",
+ "| | conditions and a large array of management constraints. |\n",
+ "| | Overall the model is set up to be daily. Some processes such |\n",
+ "| | as water balance are temporally nested (subdaily)\\n.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/CYCLES |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['ClimComp is a Python routine for comparing the seasonal |\n",
+ "| | prediction with the average climatology'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/ClimComp |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Model to calculate various drought indices from |\n",
+ "| | precipitation/temperature data.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/DSI |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Decision Support System for Agrotechnology Transfer (DSSAT) |\n",
+ "| | is software application program that comprises dynamic crop |\n",
+ "| | growth simulation models for over 40 crops. DSSAT is supported |\n",
+ "| | by a range of utilities and applications for weather, soil, |\n",
+ "| | genetic, crop management and observational experimental data. |\n",
+ "| | Includes example data sets for all crop models. The crop |\n",
+ "| | simulation models simulate growth, development and yield as a |\n",
+ "| | function of the soil-plant-atmosphere dynamics |\n",
+ "| | (https://dssat.net/. 2019)'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/DSSAT |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Aggregate crop supply response model (EACS) describes an |\n",
+ "| | aggregate crop supply response model for a region (tested for |\n",
+ "| | South Sudan). This is a regional-scale aggregate model of |\n",
+ "| | agricultural supply for a specified set of crops (cassava, |\n",
+ "| | groundnuts, maize, sesame seed, and sorghum).'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/ECONOMIC_AGGREGATE_CROP_SUPPLY |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['This Python model calculates a flood severity index based on |\n",
+ "| | the annual maxima of volumetric flow for the period 1981-2017 |\n",
+ "| | obtained from the GloFAS data (http://www.globalfloods.eu/). |\n",
+ "| | The thresholds were estimated from a Gumbel distribution using |\n",
+ "| | the methods of L-moments. The severity is based on a 2-yr |\n",
+ "| | return period (medium), 5-yr return period (high), and 20-yr |\n",
+ "| | return period (severe).'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/FSI |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Height Above the Nearest Drainage (HAND) is a model that |\n",
+ "| | normalizes topography according to the local relative heights |\n",
+ "| | found along a given drainage network. Model output shows a |\n",
+ "| | high correlation with the depth of the water table in a region |\n",
+ "| | and provide an accurate spatial representation of soil water |\n",
+ "| | environments. HAND takes as input a Digital Elevation Map of a |\n",
+ "| | given region, producing as outputa normalized draining |\n",
+ "| | potential (or relative vertical flowpath-distance) to the |\n",
+ "| | nearest drainages.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/HAND |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Kimetrica model simulates land use'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/KIMETRICA_LAND_USE |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Modflow is a popular open-source groundwater flow model |\n",
+ "| | distributed by the U.S. Geological survey'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/MODFLOW |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Penn State Integrated Hydrologic Modeling System (PIHM) |\n",
+ "| | is a finite volume code used for simulating the distributed |\n",
+ "| | hydrologic states of a given watershed or river basin. PIHM |\n",
+ "| | accounts for many physical processes including: land surface |\n",
+ "| | processes (evaporation- transpiration, canopy interception, |\n",
+ "| | snowmelt) overland/channel flow coupled to groundwater flow. |\n",
+ "| | PIHM can include reservoirs and flow control structures. PIHM |\n",
+ "| | applies adaptive time stepping and uses the method of lines to |\n",
+ "| | solve the system of implicit equations.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/PIHM |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Soil & Water Assessment Tool (SWAT) is a small watershed |\n",
+ "| | to river basin-scale model used to simulate the quality and |\n",
+ "| | quantity of surface and ground water and predict the |\n",
+ "| | environmental impact of land use; land management practices |\n",
+ "| | and climate change (https://swat.tamu.edu/ 2019)'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/SWAT |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Topoflow is a powerful spatially-distributed hydrologic |\n",
+ "| | model for various physical processes in a watershed, with the |\n",
+ "| | goal of accurately predicting how various hydrologic variables |\n",
+ "| | will evolve in time in response to climatic forcings.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/TOPOFLOW |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "\n",
+ "\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+=============+================================================================+\n",
+ "| description | ['Cycles simulates the productivity and the water,carbon and |\n",
+ "| | nitrogen balance of soil-crop systems subject to climate |\n",
+ "| | conditions and a large array of management constraints. |\n",
+ "| | Overall the model is set up to be daily. Some processes such |\n",
+ "| | as water balance are temporally nested (subdaily)\\n.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/CYCLES |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['ClimComp is a Python routine for comparing the seasonal |\n",
+ "| | prediction with the average climatology'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/ClimComp |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Model to calculate various drought indices from |\n",
+ "| | precipitation/temperature data.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/DSI |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Decision Support System for Agrotechnology Transfer (DSSAT) |\n",
+ "| | is software application program that comprises dynamic crop |\n",
+ "| | growth simulation models for over 40 crops. DSSAT is supported |\n",
+ "| | by a range of utilities and applications for weather, soil, |\n",
+ "| | genetic, crop management and observational experimental data. |\n",
+ "| | Includes example data sets for all crop models. The crop |\n",
+ "| | simulation models simulate growth, development and yield as a |\n",
+ "| | function of the soil-plant-atmosphere dynamics |\n",
+ "| | (https://dssat.net/. 2019)'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/DSSAT |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Aggregate crop supply response model (EACS) describes an |\n",
+ "| | aggregate crop supply response model for a region (tested for |\n",
+ "| | South Sudan). This is a regional-scale aggregate model of |\n",
+ "| | agricultural supply for a specified set of crops (cassava, |\n",
+ "| | groundnuts, maize, sesame seed, and sorghum).'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/ECONOMIC_AGGREGATE_CROP_SUPPLY |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['This Python model calculates a flood severity index based on |\n",
+ "| | the annual maxima of volumetric flow for the period 1981-2017 |\n",
+ "| | obtained from the GloFAS data (http://www.globalfloods.eu/). |\n",
+ "| | The thresholds were estimated from a Gumbel distribution using |\n",
+ "| | the methods of L-moments. The severity is based on a 2-yr |\n",
+ "| | return period (medium), 5-yr return period (high), and 20-yr |\n",
+ "| | return period (severe).'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/FSI |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Height Above the Nearest Drainage (HAND) is a model that |\n",
+ "| | normalizes topography according to the local relative heights |\n",
+ "| | found along a given drainage network. Model output shows a |\n",
+ "| | high correlation with the depth of the water table in a region |\n",
+ "| | and provide an accurate spatial representation of soil water |\n",
+ "| | environments. HAND takes as input a Digital Elevation Map of a |\n",
+ "| | given region, producing as outputa normalized draining |\n",
+ "| | potential (or relative vertical flowpath-distance) to the |\n",
+ "| | nearest drainages.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/HAND |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Kimetrica model simulates land use'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/KIMETRICA_LAND_USE |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Modflow is a popular open-source groundwater flow model |\n",
+ "| | distributed by the U.S. Geological survey'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/MODFLOW |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Penn State Integrated Hydrologic Modeling System (PIHM) |\n",
+ "| | is a finite volume code used for simulating the distributed |\n",
+ "| | hydrologic states of a given watershed or river basin. PIHM |\n",
+ "| | accounts for many physical processes including: land surface |\n",
+ "| | processes (evaporation- transpiration, canopy interception, |\n",
+ "| | snowmelt) overland/channel flow coupled to groundwater flow. |\n",
+ "| | PIHM can include reservoirs and flow control structures. PIHM |\n",
+ "| | applies adaptive time stepping and uses the method of lines to |\n",
+ "| | solve the system of implicit equations.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/PIHM |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Soil & Water Assessment Tool (SWAT) is a small watershed |\n",
+ "| | to river basin-scale model used to simulate the quality and |\n",
+ "| | quantity of surface and ground water and predict the |\n",
+ "| | environmental impact of land use; land management practices |\n",
+ "| | and climate change (https://swat.tamu.edu/ 2019)'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/SWAT |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Topoflow is a powerful spatially-distributed hydrologic |\n",
+ "| | model for various physical processes in a watershed, with the |\n",
+ "| | goal of accurately predicting how various hydrologic variables |\n",
+ "| | will evolve in time in response to climatic forcings.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/TOPOFLOW |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['WGEN: A global weather generator for daily data derived from |\n",
+ "| | the Global Weather Generator (GWGEN)'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/WGEN |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "\n",
+ "\n"
+ ]
+ }
+ ],
+ "source": [
+ "print_resources(models, filter={'id', 'description'})"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "### Search **Models**"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 6,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "'Number of model configurations available: 2'\n"
+ ]
+ }
+ ],
+ "source": [
+ "# create an instance of the API class\n",
+ "api_instance = modelcatalog.ModelApi()\n",
+ "label='agriculture'\n",
+ "try:\n",
+ " # List all Model entities\n",
+ " models = api_instance.models_get(username=username, label=label)\n",
+ " pprint(\"Number of model configurations available: {}\".format(len(models)))\n",
+ "except ApiException as e:\n",
+ " print(\"Exception when calling ModelApi->models_get: %s\\n\" % e)"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 7,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "[{'author': ['https://w3id.org/okn/i/mint/kemanian_armen'],\n",
+ " 'date_created': ['2016'],\n",
+ " 'description': ['Cycles simulates the productivity and the water,carbon and '\n",
+ " 'nitrogen balance of soil-crop systems subject to climate '\n",
+ " 'conditions and a large array of management constraints. '\n",
+ " 'Overall the model is set up to be daily. Some processes such '\n",
+ " 'as water balance are temporally nested (subdaily)\\n'\n",
+ " '.'],\n",
+ " 'has_assumption': ['The simulation unit in Cycles is a field with a single '\n",
+ " 'soil (soil file) that is layered (user defined number of '\n",
+ " 'layers) exposed to a daily weather (weather file) and '\n",
+ " 'subject to operations (operations file) that control soil '\n",
+ " 'properties; vegetation properties (crop file) and surface '\n",
+ " 'residue properties. Variables in weather file are '\n",
+ " 'considered rigid forcings. Surface conditions do not '\n",
+ " 'alter air temperature or moisture. Soil is connected to '\n",
+ " 'the residues; aboveground living biomass; air; and '\n",
+ " 'radiation from the atmosphere; and with the bottom of the '\n",
+ " 'profile. There is no lateral water or solutes movement '\n",
+ " 'within the soil profile. When running stand alone; runoff '\n",
+ " 'and percolation water simply leaves the simulation unit. '\n",
+ " 'Vegetation can be composed of monocultures (single '\n",
+ " 'species) or multiple species. The parameters describing '\n",
+ " 'each plant of the community are described in the crop '\n",
+ " 'file. The operations file allows multiple types of '\n",
+ " 'interventions organized as tillage; fertilization; and '\n",
+ " 'planting events. Operations like kill crop are part of '\n",
+ " 'tillage. To enable coupling with other models; Cycles can '\n",
+ " 'be set to replace (re-initialize) internally calculated '\n",
+ " 'variable with external inputs. For example; infiltration '\n",
+ " 'can be an input from the PIHM model; soil moisture can be '\n",
+ " 'reset based on observations or data from other models. '\n",
+ " 'This flexibility extends to all state variables. '\n",
+ " 'Re-initialization algorithm can break the mass balance '\n",
+ " 'and is not recommended unless the goal overrides mass or '\n",
+ " 'energy balance concerns. Overall the model is set up to '\n",
+ " 'be daily. Some processes such as water balance are '\n",
+ " 'temporally nested (subdaily)'],\n",
+ " 'has_contact_person': [{'id': 'https://w3id.org/okn/i/mint/kemanian_armen',\n",
+ " 'type': 'sd:Person'}],\n",
+ " 'has_documentation': ['https://plantscience.psu.edu/research/labs/kemanian/models-and-tools/cycles'],\n",
+ " 'has_download_url': ['https://github.com/PSUmodeling/Cycles'],\n",
+ " 'has_example': ['#### Below is an illustrative example on how to use Cycles.\\n'\n",
+ " '---\\n'\n",
+ " 'General instructions: When using the Cycles AgroEcosystems '\n",
+ " 'Model in any region, you should follow the steps indicated '\n",
+ " 'below :\\n'\n",
+ " '\\n'\n",
+ " '1) Find your field location using a map. Cycles is a '\n",
+ " 'point-based model, and you will need information about the '\n",
+ " 'soil and weather for the point being simulated.\\n'\n",
+ " '\\n'\n",
+ " '2) [Expert users/modelers] Check the default control '\n",
+ " 'properties. These can be found in the Cycles control file. '\n",
+ " 'In the MINT configuration of Cycles, this file is not '\n",
+ " 'exposed, but can be found by downloading the component and '\n",
+ " 'looking at the technical details.\\n'\n",
+ " ' \\n'\n",
+ " '3) Check the soil values for the chosen location (by default '\n",
+ " 'Cyles uses '\n",
+ " '[GSSURGO](https://www.nrcs.usda.gov/wps/portal/nrcs/detail/soils/home/?cid=nrcs142p2_053628)) '\n",
+ " 'properties from your field location.\\n'\n",
+ " ' \\n'\n",
+ " '4) Select the weather location (by default Cycles tries to '\n",
+ " 'use the closest GLDAS grid) for your field location. A '\n",
+ " 'python script is used to read GLDAS netCDF4 files, aggregate '\n",
+ " 'subdaily GLDAS forcing data to daily resolution, and output '\n",
+ " 'the daily variables in text format to be used by Cycles.\\n'\n",
+ " ' \\n'\n",
+ " '5) **[Expert users/modelers]** Create operations for your '\n",
+ " 'field location using the Operation Panel and/or Timeline. In '\n",
+ " 'the MINT configuration of Cycles, this file is not exposed, '\n",
+ " 'but can be found by downloading the component and looking at '\n",
+ " 'the technical details.\\n'\n",
+ " '\\n'\n",
+ " '6) Inspect/visualize model results.\\n'\n",
+ " '\\n'\n",
+ " '\\n'\n",
+ " '**Scenario**: In our case we want to calculate the Seasonal '\n",
+ " 'Crop Production Index for the Pongo basin in South Sudan, '\n",
+ " 'because it provides a fast and robust way of reporting '\n",
+ " 'normalized yields for a given grid point or region. The goal '\n",
+ " 'of the index is to easily segment “years” or “seasons” that '\n",
+ " 'can be problematic for food production, and to provide an '\n",
+ " 'intuitive sense of the magnitude of the problem. The raw '\n",
+ " 'yield outputs might be difficult to interpret for '\n",
+ " 'non-experts, and index is more transparent.\\n'\n",
+ " '\\n'\n",
+ " 'The Seasonal Crop Production Index is based on the ratio of '\n",
+ " 'the yield of a given combination of planting date, '\n",
+ " 'fertilization and weed pressure to the median yield under '\n",
+ " 'such conditions across years:\\n'\n",
+ " ' \\n'\n",
+ " ' * An index = 1 means that the year resembles the median '\n",
+ " 'years, and it is assumed that it represents a neutral '\n",
+ " 'condition (neither local excess or shortage of food '\n",
+ " 'supply). \\n'\n",
+ " ' * An index > 1 means that the local food supply may exceed '\n",
+ " 'the median, and the larger the number the better off the '\n",
+ " 'location. The caveat here is that flooding damage might be '\n",
+ " 'underestimated. As we refine our simulations this limitation '\n",
+ " 'will be lifted.\\n'\n",
+ " ' * An index < 1 means a situation worse than normal, and the '\n",
+ " 'lower the value the worse the situation. It is safe to '\n",
+ " 'assume that this is a reliable indicator of local food '\n",
+ " 'shortage.\\n'\n",
+ " '\\n'\n",
+ " '**Data sources**:When attempting to follow the steps '\n",
+ " 'indicated above, the most difficult challenge is finding '\n",
+ " 'weather and soil files for our target region, as they are '\n",
+ " 'not available in GSSURGO or NLDAS. Therefore we selected the '\n",
+ " 'soils information from '\n",
+ " '[USDA](https://www.nrcs.usda.gov/wps/portal/nrcs/detail/soils/survey/tools/?cid=nrcseprd1407030), '\n",
+ " 'and [Global Land Data Assimilation System '\n",
+ " '(GLDAS)](https://ldas.gsfc.nasa.gov/gldas) for the weather '\n",
+ " 'data. GLDAS has coarser temporal resolution than NLDAS, but '\n",
+ " 'has global coverage which is critical in our use case.\\n'\n",
+ " '\\n'\n",
+ " '**Results**: We executed Cycles in 209 locations we selected '\n",
+ " 'in the Pongo region, selecting \"Maize\" as our target crop '\n",
+ " 'and with multiple fertilization rates and weed fraction. '\n",
+ " 'Figure 1 shows the Variation of the Seasonal Crop Production '\n",
+ " 'Index for maize for one agricultural grid point in the Pongo '\n",
+ " 'Basin, after consolidating the results of each of the '\n",
+ " 'executions. The nitrogen rates represent from low to high '\n",
+ " 'fertilization (for the agronomy minded, 78 to 1250 kg/ha of '\n",
+ " 'raw fertilizer with 32% nitrogen). The 0.4 in the legend '\n",
+ " 'indicates the weed pressure (medium). The planting dates are '\n",
+ " 'not shown here, but an analyst can easily explore their '\n",
+ " 'impact by expanding the data selection. Clearly, years 2011, '\n",
+ " '2016 and 2017 in particular were problematic. \\n'\n",
+ " '\\n'\n",
+ " '\\n'\n",
+ " '\\n'\n",
+ " '**Figure 1: Variation of the Seasonal Crop Production Index '\n",
+ " 'for maize for one agricultural grid point in the Pongo '\n",
+ " 'Basin.**\\n'\n",
+ " '\\n'\n",
+ " '---\\n'\n",
+ " 'For more information on using Cycles, please see '\n",
+ " 'https://www.cycles-model.psu.edu/Cycles/CyclesModel.html.'],\n",
+ " 'has_explanation_diagram': [{'id': 'https://w3id.org/okn/i/mint/cycles_forrester',\n",
+ " 'type': 'Image'}],\n",
+ " 'has_funding': [{'id': 'https://w3id.org/okn/i/mint/CYCLES_funding',\n",
+ " 'type': 'FundingInformation'}],\n",
+ " 'has_grid': [{'id': 'https://w3id.org/okn/i/mint/cycles_grid',\n",
+ " 'type': ['Grid', 'PointBasedGrid']}],\n",
+ " 'has_installation_instructions': ['http://psumodeling.github.io/Cycles/'],\n",
+ " 'has_model_category': ['Agriculture'],\n",
+ " 'has_purpose': ['crop seasonal production'],\n",
+ " 'has_version': [{'id': 'https://w3id.org/okn/i/mint/cycles_v0.9.3_alpha',\n",
+ " 'type': ['SoftwareVersion', 'Theory-GuidedModel']},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/cycles_v0.10.2_alpha',\n",
+ " 'type': ['SoftwareVersion', 'Theory-GuidedModel']},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/cycles_v0.9.4_alpha',\n",
+ " 'type': ['SoftwareVersion', 'Theory-GuidedModel']}],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/CYCLES',\n",
+ " 'keywords': ['Agriculture; crop yield; crop failure; weather; fertilizer; '\n",
+ " 'crop management'],\n",
+ " 'label': ['Cycles'],\n",
+ " 'logo': [{'id': 'https://w3id.org/okn/i/mint/cycles_logo', 'type': 'Image'}],\n",
+ " 'operating_systems': ['Windows;Unix'],\n",
+ " 'publisher': [{'id': 'https://w3id.org/okn/i/mint/penn_state_university',\n",
+ " 'type': 'sd:Organization'}],\n",
+ " 'type': ['Model', 'Theory-GuidedModel'],\n",
+ " 'useful_for_calculating_index': [{'id': 'http://www.geoscienceontology.org/svo/svl/variable#crop_production__seasonal_production_index',\n",
+ " 'type': ['http://www.geoscienceontology.org/svo/svu#Variable',\n",
+ " 'http://www.w3.org/2002/07/owl#NamedIndividual']}],\n",
+ " 'website': ['https://plantscience.psu.edu/research/labs/kemanian/models-and-tools/cycles']},\n",
+ " {'author': [{'id': 'https://w3id.org/okn/i/mint/porter_cheryl',\n",
+ " 'type': 'sd:Person'},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/white_jeff',\n",
+ " 'type': 'sd:Person'},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/shelia_vakhtang',\n",
+ " 'type': 'sd:Person'},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/boote_ken',\n",
+ " 'type': 'sd:Person'},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/singh_upendra',\n",
+ " 'type': 'sd:Person'},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/hoogenboom_gerrit',\n",
+ " 'type': 'sd:Person'}],\n",
+ " 'citation': ['Hoogenboom; G.; C.H. Porter; V. Shelia; K.J. Boote; U. Singh; '\n",
+ " 'J.W. White; L.A. Hunt; R. Ogoshi; J.I. Lizaso; J. Koo; S. '\n",
+ " 'Asseng; A. Singels; L.P. Moreno; and J.W. Jones. 2019. Decision '\n",
+ " 'Support System for Agrotechnology Transfer (DSSAT) Version '\n",
+ " '4.7.5\" (https://DSSAT.net). DSSAT Foundation; Gainesville; '\n",
+ " 'Florida; USA'],\n",
+ " 'date_created': ['1989'],\n",
+ " 'description': ['Decision Support System for Agrotechnology Transfer (DSSAT) '\n",
+ " 'is software application program that comprises dynamic crop '\n",
+ " 'growth simulation models for over 40 crops. DSSAT is '\n",
+ " 'supported by a range of utilities and applications for '\n",
+ " 'weather, soil, genetic, crop management and observational '\n",
+ " 'experimental data. Includes example data sets for all crop '\n",
+ " 'models. The crop simulation models simulate growth, '\n",
+ " 'development and yield as a function of the '\n",
+ " 'soil-plant-atmosphere dynamics (https://dssat.net/. 2019)'],\n",
+ " 'had_primary_source': [{'id': 'https://dssat.net/', 'type': 'Thing'}],\n",
+ " 'has_documentation': ['https://dssat.net'],\n",
+ " 'has_download_url': ['https://apps.agapps.org/ide/serial/index.php/request?sft=3'],\n",
+ " 'has_funding': [{'id': 'https://w3id.org/okn/i/mint/DSSAT_funding',\n",
+ " 'type': 'FundingInformation'}],\n",
+ " 'has_model_category': ['Agriculture'],\n",
+ " 'has_version': [{'id': 'https://w3id.org/okn/i/mint/DSSAT_4.7',\n",
+ " 'type': ['SoftwareVersion', 'Theory-GuidedModel']}],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/DSSAT',\n",
+ " 'keywords': ['Decision Support System; Agrotechnology; crop growth '\n",
+ " 'simulation; weather; soil; genetic; crop '\n",
+ " 'management;soil-plant-atmosphere dynamics'],\n",
+ " 'label': ['Decision Support System for Agrotechnology Transfer (DSSAT)'],\n",
+ " 'logo': [{'id': 'https://w3id.org/okn/i/mint/dssat_logo', 'type': 'Image'}],\n",
+ " 'operating_systems': ['Windows;Unix'],\n",
+ " 'publisher': [{'id': 'https://w3id.org/okn/i/mint/dssat_foundation',\n",
+ " 'type': 'sd:Organization'}],\n",
+ " 'reference_publication': ['Hoogenboom; G.; C.H. Porter; V. Shelia; K.J. '\n",
+ " 'Boote; U. Singh; J.W. White; L.A. Hunt; R. Ogoshi; '\n",
+ " 'J.I. Lizaso; J. Koo; S. Asseng; A. Singels; L.P. '\n",
+ " 'Moreno; and J.W. Jones. 2019. Decision Support '\n",
+ " 'System for Agrotechnology Transfer (DSSAT) Version '\n",
+ " '4.7.5\" (https://DSSAT.net). DSSAT Foundation; '\n",
+ " 'Gainesville; Florida; USA'],\n",
+ " 'type': ['Model', 'Theory-GuidedModel'],\n",
+ " 'website': ['https://dssat.net/']}]\n"
+ ]
+ }
+ ],
+ "source": [
+ "pprint(models)"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 8,
+ "metadata": {
+ "scrolled": true
+ },
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "+-------------+----------------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+=============+================================================================+\n",
+ "| description | ['Cycles simulates the productivity and the water,carbon and |\n",
+ "| | nitrogen balance of soil-crop systems subject to climate |\n",
+ "| | conditions and a large array of management constraints. |\n",
+ "| | Overall the model is set up to be daily. Some processes such |\n",
+ "| | as water balance are temporally nested (subdaily)\\n.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/CYCLES |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "\n",
+ "\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+=============+================================================================+\n",
+ "| description | ['Cycles simulates the productivity and the water,carbon and |\n",
+ "| | nitrogen balance of soil-crop systems subject to climate |\n",
+ "| | conditions and a large array of management constraints. |\n",
+ "| | Overall the model is set up to be daily. Some processes such |\n",
+ "| | as water balance are temporally nested (subdaily)\\n.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/CYCLES |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Decision Support System for Agrotechnology Transfer (DSSAT) |\n",
+ "| | is software application program that comprises dynamic crop |\n",
+ "| | growth simulation models for over 40 crops. DSSAT is supported |\n",
+ "| | by a range of utilities and applications for weather, soil, |\n",
+ "| | genetic, crop management and observational experimental data. |\n",
+ "| | Includes example data sets for all crop models. The crop |\n",
+ "| | simulation models simulate growth, development and yield as a |\n",
+ "| | function of the soil-plant-atmosphere dynamics |\n",
+ "| | (https://dssat.net/. 2019)'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/DSSAT |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "\n",
+ "\n"
+ ]
+ }
+ ],
+ "source": [
+ "print_resources(models, filter={'id', 'description'})"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 9,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "'Number of model configurations available: 13'\n"
+ ]
+ }
+ ],
+ "source": [
+ "# create an instance of the API class\n",
+ "api_instance = modelcatalog.ModelApi()\n",
+ "try:\n",
+ " # List all Model entities\n",
+ " models = api_instance.models_get(username=username)\n",
+ " pprint(\"Number of model configurations available: {}\".format(len(models)))\n",
+ "except ApiException as e:\n",
+ " print(\"Exception when calling ModelApi->models_get: %s\\n\" % e)"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 10,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "[{'author': ['https://w3id.org/okn/i/mint/kemanian_armen'],\n",
+ " 'date_created': ['2016'],\n",
+ " 'description': ['Cycles simulates the productivity and the water,carbon and '\n",
+ " 'nitrogen balance of soil-crop systems subject to climate '\n",
+ " 'conditions and a large array of management constraints. '\n",
+ " 'Overall the model is set up to be daily. Some processes such '\n",
+ " 'as water balance are temporally nested (subdaily)\\n'\n",
+ " '.'],\n",
+ " 'has_assumption': ['The simulation unit in Cycles is a field with a single '\n",
+ " 'soil (soil file) that is layered (user defined number of '\n",
+ " 'layers) exposed to a daily weather (weather file) and '\n",
+ " 'subject to operations (operations file) that control soil '\n",
+ " 'properties; vegetation properties (crop file) and surface '\n",
+ " 'residue properties. Variables in weather file are '\n",
+ " 'considered rigid forcings. Surface conditions do not '\n",
+ " 'alter air temperature or moisture. Soil is connected to '\n",
+ " 'the residues; aboveground living biomass; air; and '\n",
+ " 'radiation from the atmosphere; and with the bottom of the '\n",
+ " 'profile. There is no lateral water or solutes movement '\n",
+ " 'within the soil profile. When running stand alone; runoff '\n",
+ " 'and percolation water simply leaves the simulation unit. '\n",
+ " 'Vegetation can be composed of monocultures (single '\n",
+ " 'species) or multiple species. The parameters describing '\n",
+ " 'each plant of the community are described in the crop '\n",
+ " 'file. The operations file allows multiple types of '\n",
+ " 'interventions organized as tillage; fertilization; and '\n",
+ " 'planting events. Operations like kill crop are part of '\n",
+ " 'tillage. To enable coupling with other models; Cycles can '\n",
+ " 'be set to replace (re-initialize) internally calculated '\n",
+ " 'variable with external inputs. For example; infiltration '\n",
+ " 'can be an input from the PIHM model; soil moisture can be '\n",
+ " 'reset based on observations or data from other models. '\n",
+ " 'This flexibility extends to all state variables. '\n",
+ " 'Re-initialization algorithm can break the mass balance '\n",
+ " 'and is not recommended unless the goal overrides mass or '\n",
+ " 'energy balance concerns. Overall the model is set up to '\n",
+ " 'be daily. Some processes such as water balance are '\n",
+ " 'temporally nested (subdaily)'],\n",
+ " 'has_contact_person': [{'id': 'https://w3id.org/okn/i/mint/kemanian_armen',\n",
+ " 'type': 'sd:Person'}],\n",
+ " 'has_documentation': ['https://plantscience.psu.edu/research/labs/kemanian/models-and-tools/cycles'],\n",
+ " 'has_download_url': ['https://github.com/PSUmodeling/Cycles'],\n",
+ " 'has_example': ['#### Below is an illustrative example on how to use Cycles.\\n'\n",
+ " '---\\n'\n",
+ " 'General instructions: When using the Cycles AgroEcosystems '\n",
+ " 'Model in any region, you should follow the steps indicated '\n",
+ " 'below :\\n'\n",
+ " '\\n'\n",
+ " '1) Find your field location using a map. Cycles is a '\n",
+ " 'point-based model, and you will need information about the '\n",
+ " 'soil and weather for the point being simulated.\\n'\n",
+ " '\\n'\n",
+ " '2) [Expert users/modelers] Check the default control '\n",
+ " 'properties. These can be found in the Cycles control file. '\n",
+ " 'In the MINT configuration of Cycles, this file is not '\n",
+ " 'exposed, but can be found by downloading the component and '\n",
+ " 'looking at the technical details.\\n'\n",
+ " ' \\n'\n",
+ " '3) Check the soil values for the chosen location (by default '\n",
+ " 'Cyles uses '\n",
+ " '[GSSURGO](https://www.nrcs.usda.gov/wps/portal/nrcs/detail/soils/home/?cid=nrcs142p2_053628)) '\n",
+ " 'properties from your field location.\\n'\n",
+ " ' \\n'\n",
+ " '4) Select the weather location (by default Cycles tries to '\n",
+ " 'use the closest GLDAS grid) for your field location. A '\n",
+ " 'python script is used to read GLDAS netCDF4 files, aggregate '\n",
+ " 'subdaily GLDAS forcing data to daily resolution, and output '\n",
+ " 'the daily variables in text format to be used by Cycles.\\n'\n",
+ " ' \\n'\n",
+ " '5) **[Expert users/modelers]** Create operations for your '\n",
+ " 'field location using the Operation Panel and/or Timeline. In '\n",
+ " 'the MINT configuration of Cycles, this file is not exposed, '\n",
+ " 'but can be found by downloading the component and looking at '\n",
+ " 'the technical details.\\n'\n",
+ " '\\n'\n",
+ " '6) Inspect/visualize model results.\\n'\n",
+ " '\\n'\n",
+ " '\\n'\n",
+ " '**Scenario**: In our case we want to calculate the Seasonal '\n",
+ " 'Crop Production Index for the Pongo basin in South Sudan, '\n",
+ " 'because it provides a fast and robust way of reporting '\n",
+ " 'normalized yields for a given grid point or region. The goal '\n",
+ " 'of the index is to easily segment “years” or “seasons” that '\n",
+ " 'can be problematic for food production, and to provide an '\n",
+ " 'intuitive sense of the magnitude of the problem. The raw '\n",
+ " 'yield outputs might be difficult to interpret for '\n",
+ " 'non-experts, and index is more transparent.\\n'\n",
+ " '\\n'\n",
+ " 'The Seasonal Crop Production Index is based on the ratio of '\n",
+ " 'the yield of a given combination of planting date, '\n",
+ " 'fertilization and weed pressure to the median yield under '\n",
+ " 'such conditions across years:\\n'\n",
+ " ' \\n'\n",
+ " ' * An index = 1 means that the year resembles the median '\n",
+ " 'years, and it is assumed that it represents a neutral '\n",
+ " 'condition (neither local excess or shortage of food '\n",
+ " 'supply). \\n'\n",
+ " ' * An index > 1 means that the local food supply may exceed '\n",
+ " 'the median, and the larger the number the better off the '\n",
+ " 'location. The caveat here is that flooding damage might be '\n",
+ " 'underestimated. As we refine our simulations this limitation '\n",
+ " 'will be lifted.\\n'\n",
+ " ' * An index < 1 means a situation worse than normal, and the '\n",
+ " 'lower the value the worse the situation. It is safe to '\n",
+ " 'assume that this is a reliable indicator of local food '\n",
+ " 'shortage.\\n'\n",
+ " '\\n'\n",
+ " '**Data sources**:When attempting to follow the steps '\n",
+ " 'indicated above, the most difficult challenge is finding '\n",
+ " 'weather and soil files for our target region, as they are '\n",
+ " 'not available in GSSURGO or NLDAS. Therefore we selected the '\n",
+ " 'soils information from '\n",
+ " '[USDA](https://www.nrcs.usda.gov/wps/portal/nrcs/detail/soils/survey/tools/?cid=nrcseprd1407030), '\n",
+ " 'and [Global Land Data Assimilation System '\n",
+ " '(GLDAS)](https://ldas.gsfc.nasa.gov/gldas) for the weather '\n",
+ " 'data. GLDAS has coarser temporal resolution than NLDAS, but '\n",
+ " 'has global coverage which is critical in our use case.\\n'\n",
+ " '\\n'\n",
+ " '**Results**: We executed Cycles in 209 locations we selected '\n",
+ " 'in the Pongo region, selecting \"Maize\" as our target crop '\n",
+ " 'and with multiple fertilization rates and weed fraction. '\n",
+ " 'Figure 1 shows the Variation of the Seasonal Crop Production '\n",
+ " 'Index for maize for one agricultural grid point in the Pongo '\n",
+ " 'Basin, after consolidating the results of each of the '\n",
+ " 'executions. The nitrogen rates represent from low to high '\n",
+ " 'fertilization (for the agronomy minded, 78 to 1250 kg/ha of '\n",
+ " 'raw fertilizer with 32% nitrogen). The 0.4 in the legend '\n",
+ " 'indicates the weed pressure (medium). The planting dates are '\n",
+ " 'not shown here, but an analyst can easily explore their '\n",
+ " 'impact by expanding the data selection. Clearly, years 2011, '\n",
+ " '2016 and 2017 in particular were problematic. \\n'\n",
+ " '\\n'\n",
+ " '\\n'\n",
+ " '\\n'\n",
+ " '**Figure 1: Variation of the Seasonal Crop Production Index '\n",
+ " 'for maize for one agricultural grid point in the Pongo '\n",
+ " 'Basin.**\\n'\n",
+ " '\\n'\n",
+ " '---\\n'\n",
+ " 'For more information on using Cycles, please see '\n",
+ " 'https://www.cycles-model.psu.edu/Cycles/CyclesModel.html.'],\n",
+ " 'has_explanation_diagram': [{'id': 'https://w3id.org/okn/i/mint/cycles_forrester',\n",
+ " 'type': 'Image'}],\n",
+ " 'has_funding': [{'id': 'https://w3id.org/okn/i/mint/CYCLES_funding',\n",
+ " 'type': 'FundingInformation'}],\n",
+ " 'has_grid': [{'id': 'https://w3id.org/okn/i/mint/cycles_grid',\n",
+ " 'type': ['Grid', 'PointBasedGrid']}],\n",
+ " 'has_installation_instructions': ['http://psumodeling.github.io/Cycles/'],\n",
+ " 'has_model_category': ['Agriculture'],\n",
+ " 'has_purpose': ['crop seasonal production'],\n",
+ " 'has_version': [{'id': 'https://w3id.org/okn/i/mint/cycles_v0.9.3_alpha',\n",
+ " 'type': ['SoftwareVersion', 'Theory-GuidedModel']},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/cycles_v0.10.2_alpha',\n",
+ " 'type': ['SoftwareVersion', 'Theory-GuidedModel']},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/cycles_v0.9.4_alpha',\n",
+ " 'type': ['SoftwareVersion', 'Theory-GuidedModel']}],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/CYCLES',\n",
+ " 'keywords': ['Agriculture; crop yield; crop failure; weather; fertilizer; '\n",
+ " 'crop management'],\n",
+ " 'label': ['Cycles'],\n",
+ " 'logo': [{'id': 'https://w3id.org/okn/i/mint/cycles_logo', 'type': 'Image'}],\n",
+ " 'operating_systems': ['Windows;Unix'],\n",
+ " 'publisher': [{'id': 'https://w3id.org/okn/i/mint/penn_state_university',\n",
+ " 'type': 'sd:Organization'}],\n",
+ " 'type': ['Model', 'Theory-GuidedModel'],\n",
+ " 'useful_for_calculating_index': [{'id': 'http://www.geoscienceontology.org/svo/svl/variable#crop_production__seasonal_production_index',\n",
+ " 'type': ['http://www.geoscienceontology.org/svo/svu#Variable',\n",
+ " 'http://www.w3.org/2002/07/owl#NamedIndividual']}],\n",
+ " 'website': ['https://plantscience.psu.edu/research/labs/kemanian/models-and-tools/cycles']},\n",
+ " {'author': ['https://w3id.org/okn/i/mint/khider_deborah'],\n",
+ " 'date_created': ['2018'],\n",
+ " 'description': ['ClimComp is a Python routine for comparing the seasonal '\n",
+ " 'prediction with the average climatology'],\n",
+ " 'had_primary_source': [{'id': 'https://github.com/KnowledgeCaptureAndDiscovery/ClimComp',\n",
+ " 'type': 'Thing'}],\n",
+ " 'has_contact_person': [{'id': 'https://w3id.org/okn/i/mint/khider_deborah',\n",
+ " 'type': 'sd:Person'}],\n",
+ " 'has_documentation': ['https://github.com/KnowledgeCaptureAndDiscovery/ClimComp/blob/master/README.md'],\n",
+ " 'has_download_url': ['https://github.com/KnowledgeCaptureAndDiscovery/ClimComp'],\n",
+ " 'has_funding': [{'id': 'https://w3id.org/okn/i/mint/ClimComp_funding',\n",
+ " 'type': 'FundingInformation'}],\n",
+ " 'has_installation_instructions': ['https://github.com/KnowledgeCaptureAndDiscovery/ClimComp'],\n",
+ " 'has_model_category': ['Weather'],\n",
+ " 'has_source_code': [{'id': 'https://w3id.org/okn/i/mint/climcomp_source',\n",
+ " 'type': 'SourceCode'}],\n",
+ " 'has_version': [{'id': 'https://w3id.org/okn/i/mint/ClimComp_0.0.2',\n",
+ " 'type': ['SoftwareVersion', 'EmpiricalModel']}],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/ClimComp',\n",
+ " 'keywords': ['seasonal climate;climate; climatology;comparison'],\n",
+ " 'label': ['ClimComp'],\n",
+ " 'logo': [{'id': 'https://w3id.org/okn/i/mint/climcomp_logo', 'type': 'Image'}],\n",
+ " 'operating_systems': ['Windows;Unix'],\n",
+ " 'publisher': [{'id': 'https://w3id.org/okn/i/mint/usc',\n",
+ " 'type': 'sd:Organization'}],\n",
+ " 'software_requirements': ['xarray0.11.0;numpy1.15.0;pandas0.23.4;glob2v0.6'],\n",
+ " 'type': ['EmpiricalModel', 'Model'],\n",
+ " 'useful_for_calculating_index': [{'id': 'https://w3id.org/okn/i/mint/ATMOSPHERE_WATER__STANDARDIZED_PRECIPITATION_WETNESS_INDEX',\n",
+ " 'type': ['sdm:Index']},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/LAND_REGION_WATER__STANDARDIZED_PRECIPITATION_EVAPOTRANSPIRATION_DROUGHT_INTENSITY_INDEX',\n",
+ " 'type': ['sdm:Index']}],\n",
+ " 'website': ['https://github.com/KnowledgeCaptureAndDiscovery/ClimComp']},\n",
+ " {'author': ['https://w3id.org/okn/i/mint/khider_deborah'],\n",
+ " 'date_created': ['2019'],\n",
+ " 'date_published': ['2019'],\n",
+ " 'description': ['Model to calculate various drought indices from '\n",
+ " 'precipitation/temperature data.'],\n",
+ " 'had_primary_source': [{'id': 'https://github.com/mintproject/droughtIndices/',\n",
+ " 'type': 'Thing'}],\n",
+ " 'has_contact_person': [{'id': 'https://w3id.org/okn/i/mint/khider_deborah',\n",
+ " 'type': 'sd:Person'}],\n",
+ " 'has_documentation': ['https://github.com/mintproject/droughtIndices/blob/master/README.md'],\n",
+ " 'has_download_url': ['https://github.com/mintproject/droughtIndices'],\n",
+ " 'has_installation_instructions': ['https://github.com/mintproject/droughtIndices/blob/master/README.md'],\n",
+ " 'has_model_category': ['Hydrology'],\n",
+ " 'has_purpose': ['drought indices calculation'],\n",
+ " 'has_version': [{'id': 'https://w3id.org/okn/i/mint/dsi_1.0',\n",
+ " 'type': ['SoftwareVersion', 'EmpiricalModel']}],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/DSI',\n",
+ " 'keywords': ['hydrology; drought; index'],\n",
+ " 'label': ['Drought Severity Index model'],\n",
+ " 'license': ['https://github.com/mintproject/droughtIndices/blob/master/README.md'],\n",
+ " 'logo': [{'id': 'https://w3id.org/okn/i/mint/dsi_logo', 'type': 'Image'}],\n",
+ " 'operating_systems': ['Unix'],\n",
+ " 'software_requirements': ['Package requirements:\\n'\n",
+ " '\\n'\n",
+ " ' xarray - 0.14.1\\n'\n",
+ " ' dask - 2.2.0\\n'\n",
+ " ' netcdf4 - 1.4.2\\n'\n",
+ " ' bottleneck - 1.2.1\\n'\n",
+ " ' pandas - 0.25.3\\n'\n",
+ " ' numpy - 1.17.4\\n'\n",
+ " ' climate-indices - 1.0.6 Install this package '\n",
+ " 'from source (not pip) -> '\n",
+ " 'https://github.com/monocongo/climate_indices\\n'\n",
+ " ' cftime - 1.0.4.2\\n'\n",
+ " ' cartopy - 0.17.0 Install using conda conda '\n",
+ " 'install -c conda-forge cartopy\\n'\n",
+ " ' matplotlib - 3.1.0\\n'\n",
+ " ' imageio - 2.6.1\\n'\n",
+ " ' imageio-ffmpeg - 0.3.0'],\n",
+ " 'type': ['EmpiricalModel', 'Model'],\n",
+ " 'useful_for_calculating_index': [{'id': 'https://w3id.org/okn/i/mint/EVAPORATION_VOLUME_FLUX_INDEX',\n",
+ " 'type': ['sdm:Index']},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/ATMOSPHERE_WATER__PRECIPITATION_EVAPOTRANSPIRATION_STANDARDIZED_INDEX',\n",
+ " 'type': ['sdm:Index']},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/ATMOSPHERE_WATER__PRECIPITATION_STANDARDIZED_INDEX',\n",
+ " 'type': ['sdm:Index']}]},\n",
+ " {'author': [{'id': 'https://w3id.org/okn/i/mint/porter_cheryl',\n",
+ " 'type': 'sd:Person'},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/white_jeff',\n",
+ " 'type': 'sd:Person'},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/shelia_vakhtang',\n",
+ " 'type': 'sd:Person'},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/boote_ken',\n",
+ " 'type': 'sd:Person'},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/singh_upendra',\n",
+ " 'type': 'sd:Person'},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/hoogenboom_gerrit',\n",
+ " 'type': 'sd:Person'}],\n",
+ " 'citation': ['Hoogenboom; G.; C.H. Porter; V. Shelia; K.J. Boote; U. Singh; '\n",
+ " 'J.W. White; L.A. Hunt; R. Ogoshi; J.I. Lizaso; J. Koo; S. '\n",
+ " 'Asseng; A. Singels; L.P. Moreno; and J.W. Jones. 2019. Decision '\n",
+ " 'Support System for Agrotechnology Transfer (DSSAT) Version '\n",
+ " '4.7.5\" (https://DSSAT.net). DSSAT Foundation; Gainesville; '\n",
+ " 'Florida; USA'],\n",
+ " 'date_created': ['1989'],\n",
+ " 'description': ['Decision Support System for Agrotechnology Transfer (DSSAT) '\n",
+ " 'is software application program that comprises dynamic crop '\n",
+ " 'growth simulation models for over 40 crops. DSSAT is '\n",
+ " 'supported by a range of utilities and applications for '\n",
+ " 'weather, soil, genetic, crop management and observational '\n",
+ " 'experimental data. Includes example data sets for all crop '\n",
+ " 'models. The crop simulation models simulate growth, '\n",
+ " 'development and yield as a function of the '\n",
+ " 'soil-plant-atmosphere dynamics (https://dssat.net/. 2019)'],\n",
+ " 'had_primary_source': [{'id': 'https://dssat.net/', 'type': 'Thing'}],\n",
+ " 'has_documentation': ['https://dssat.net'],\n",
+ " 'has_download_url': ['https://apps.agapps.org/ide/serial/index.php/request?sft=3'],\n",
+ " 'has_funding': [{'id': 'https://w3id.org/okn/i/mint/DSSAT_funding',\n",
+ " 'type': 'FundingInformation'}],\n",
+ " 'has_model_category': ['Agriculture'],\n",
+ " 'has_version': [{'id': 'https://w3id.org/okn/i/mint/DSSAT_4.7',\n",
+ " 'type': ['SoftwareVersion', 'Theory-GuidedModel']}],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/DSSAT',\n",
+ " 'keywords': ['Decision Support System; Agrotechnology; crop growth '\n",
+ " 'simulation; weather; soil; genetic; crop '\n",
+ " 'management;soil-plant-atmosphere dynamics'],\n",
+ " 'label': ['Decision Support System for Agrotechnology Transfer (DSSAT)'],\n",
+ " 'logo': [{'id': 'https://w3id.org/okn/i/mint/dssat_logo', 'type': 'Image'}],\n",
+ " 'operating_systems': ['Windows;Unix'],\n",
+ " 'publisher': [{'id': 'https://w3id.org/okn/i/mint/dssat_foundation',\n",
+ " 'type': 'sd:Organization'}],\n",
+ " 'reference_publication': ['Hoogenboom; G.; C.H. Porter; V. Shelia; K.J. '\n",
+ " 'Boote; U. Singh; J.W. White; L.A. Hunt; R. Ogoshi; '\n",
+ " 'J.I. Lizaso; J. Koo; S. Asseng; A. Singels; L.P. '\n",
+ " 'Moreno; and J.W. Jones. 2019. Decision Support '\n",
+ " 'System for Agrotechnology Transfer (DSSAT) Version '\n",
+ " '4.7.5\" (https://DSSAT.net). DSSAT Foundation; '\n",
+ " 'Gainesville; Florida; USA'],\n",
+ " 'type': ['Model', 'Theory-GuidedModel'],\n",
+ " 'website': ['https://dssat.net/']},\n",
+ " {'author': [{'id': 'https://w3id.org/okn/i/mint/cobourn_kelly',\n",
+ " 'type': 'sd:Person'}],\n",
+ " 'date_created': ['2018'],\n",
+ " 'description': ['The Aggregate crop supply response model (EACS) describes an '\n",
+ " 'aggregate crop supply response model for a region (tested '\n",
+ " 'for South Sudan). This is a regional-scale aggregate model '\n",
+ " 'of agricultural supply for a specified set of crops '\n",
+ " '(cassava, groundnuts, maize, sesame seed, and sorghum).'],\n",
+ " 'has_assumption': ['The model calibrates the parameters of a constant '\n",
+ " 'elasticity of substitution (CES) production function and '\n",
+ " 'linear cost function using the positive mathematical '\n",
+ " 'programming (PMP) method. Calibration relies on observed '\n",
+ " 'data on agricultural input use (land and fertilizer) and '\n",
+ " 'crop yields. Markets are assumed complete.'],\n",
+ " 'has_example': ['#### Below is a brief illustrative example to understand how '\n",
+ " 'this model can be used in MINT.\\n'\n",
+ " '---\\n'\n",
+ " '**Scenario**: The South Sudan government plans to implement '\n",
+ " 'a regional fertilizer subsidy program to help the farmers in '\n",
+ " 'Pongo Basin area to achieve a higher level of yield and '\n",
+ " 'alleviate the food insecurity issue. The rate of fertilizer '\n",
+ " 'subsidy has not yet decided. \\n'\n",
+ " '\\n'\n",
+ " 'An analyst can use EACS within MINT to simulate how '\n",
+ " 'different levels of fertilizer subsidy rate (ranging from '\n",
+ " '10% to 50%, fully subsidized) would lead to different levels '\n",
+ " 'of output variables such as production and land use for each '\n",
+ " 'type of crops considered in the model. Based on the '\n",
+ " 'simulation results, analysts can decide what’s the optimal '\n",
+ " 'rate of fertilizer subsidy rate they want to apply in '\n",
+ " 'reality. The economic model consists of a numerical '\n",
+ " 'simulation of a non-linear constrained optimization problem '\n",
+ " 'that is calibrated to reflect observed decision-making in '\n",
+ " 'the study region. The calibration approach uses Positive '\n",
+ " 'Mathematical Programming (PMP), which ensures that the '\n",
+ " 'simulation model reflects unobserved constraints (e.g., '\n",
+ " 'access to credit, labor availability, crop rotation '\n",
+ " 'practices) that affect decisions about agricultural '\n",
+ " 'production. By varying related parameters (prices, '\n",
+ " 'land/fertilizer cost) one at a time between -50 and 50 '\n",
+ " '(increment by 10) for each crop (cassava, sorghum, maize, '\n",
+ " 'groundnuts, and sesame), simulated crop production results '\n",
+ " 'are generated to predict how farmers react to potential '\n",
+ " 'economic condition changes.\\n'\n",
+ " '\\n'\n",
+ " 'The model is an aggregate and represents decision-making by '\n",
+ " 'all agricultural households in the study region. The model '\n",
+ " 'predicts agricultural production, taking into account the '\n",
+ " 'behavioral response of farming households to changes in '\n",
+ " 'environmental, economic, and policy drivers. Output '\n",
+ " 'variables include the total amount of land in agricultural '\n",
+ " 'production, the amount of land and fertilizer used per unit '\n",
+ " 'area in the cultivation of each of the region’s crops, '\n",
+ " 'average crop yields, and net revenues earned in agricultural '\n",
+ " 'production. For the Pongo Basin in South Sudan, the model '\n",
+ " 'generates these output variables for maize, cassava, '\n",
+ " 'sorghum, groundnuts, and sesame seed crops.\\n'\n",
+ " '\\n'\n",
+ " 'In our scenario, analysts are trying to determine an optimal '\n",
+ " 'fertilizer subsidy rate for farmers in Pongo Basin to '\n",
+ " 'promote crop yield in 2017 lean season. The fertilizer '\n",
+ " 'subsidy rate can vary from 10% to 50%. \\n'\n",
+ " 'Initially, the baseline simulated crop yield and production '\n",
+ " 'are displayed in Figure 1: \\n'\n",
+ " '\\n'\n",
+ " '\\n'\n",
+ " '\\n'\n",
+ " '\\n'\n",
+ " '**Figure 1: Estimated baseline yield and production per '\n",
+ " 'crop**\\n'\n",
+ " '\\n'\n",
+ " '\\n'\n",
+ " 'By imposing a 20% fertilizer subsidy, we expect the farmers '\n",
+ " 'to use more fertilizer as inputs for some crops thus leading '\n",
+ " 'to higher yield and production level and eventually higher '\n",
+ " 'revenue level and alleviate the food insecurity problem in '\n",
+ " 'Pongo Basin area during the 2017 lean season. By using EACS, '\n",
+ " 'the simulated yield and production level after imposing the '\n",
+ " 'intervention (i.e., 20% decrease in fertilizer cost for all '\n",
+ " 'crops, assuming the fertilizer subsidy applies to all crops '\n",
+ " 'within this area) is displayed in Figure 2.\\n'\n",
+ " '\\n'\n",
+ " '\\n'\n",
+ " '\\n'\n",
+ " '**Figure 2: Estimated yield and production per crop with a '\n",
+ " '20% decrease in fertilizer cost for all crops**\\n'\n",
+ " ' \\n'\n",
+ " 'By comparing the baseline and intervention (20%) outputs, '\n",
+ " 'analysts may find a 20% fertilizer subsidy program lead to '\n",
+ " 'higher yield level for cassava and maize and higher '\n",
+ " 'production level for sorghum. Since the goal of the economic '\n",
+ " 'model is to maximize the total revenue of the farmers within '\n",
+ " 'this area, analysts would see the farmers make new decisions '\n",
+ " 'on fertilizer use and land allocation on different crops '\n",
+ " 'based on different interventions they choose. \\n'\n",
+ " '\\n'\n",
+ " 'Under the same logic, analysts can run similar simulations '\n",
+ " 'for 10%. 30%, 40% and 50% fertilizer subsidy interventions '\n",
+ " 'and check the new outcomes. We display only two outcome '\n",
+ " 'variables of Economic model: Yield and Total Production. '\n",
+ " 'Extra outcome variables such as land use, fertilizer '\n",
+ " 'application rate and total fertilizer use are also available '\n",
+ " 'for analysts to check and compare within in the MINT '\n",
+ " 'system. \\n'\n",
+ " '\\n'\n",
+ " 'By running multiple simulations with different economic '\n",
+ " 'interventions, analysts would have a general idea of how the '\n",
+ " 'proposed policy may impact the agricultural and economic '\n",
+ " 'outcomes of their interest area. The economic model outcome '\n",
+ " 'variables can also help them to further calculate the cost '\n",
+ " 'and benefit of the potential policy and finalize their '\n",
+ " 'decisions on policy-making. \\n'\n",
+ " '\\n'\n",
+ " '**Data sources**: In this scenario, the model was configured '\n",
+ " 'using Food and Agriculture Organization 2015 production data '\n",
+ " 'for baseline land use, yield and production level '\n",
+ " '(http://www.fao.org/faostat). \\n'\n",
+ " ' Crop price data are World Food Programme database '\n",
+ " '(https://data.humdata.org/dataset/wfp-food-prices-for-south-sudan) '\n",
+ " 'and estimated elasticities from related literatures. \\n'\n",
+ " '\\n'\n",
+ " 'The model was calibrated from national/regional observed '\n",
+ " 'data on land use and crop production level for behavior '\n",
+ " 'parameters, to produce optimal simulation outputs under '\n",
+ " 'various adjustments to variables within the model.'],\n",
+ " 'has_funding': [{'id': 'https://w3id.org/okn/i/mint/ECONOMIC_AGGREGATE_CROP_SUPPLY_funding',\n",
+ " 'type': 'FundingInformation'}],\n",
+ " 'has_grid': [{'id': 'https://w3id.org/okn/i/mint/econ_grid',\n",
+ " 'type': ['Grid', 'PointBasedGrid']}],\n",
+ " 'has_model_category': ['Economy'],\n",
+ " 'has_purpose': ['optimal fertilizing rates; estimated yield'],\n",
+ " 'has_version': [{'id': 'https://w3id.org/okn/i/mint/EACS_2.0',\n",
+ " 'type': ['SoftwareVersion', 'Theory-GuidedModel']},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/EACS_6.1',\n",
+ " 'type': ['SoftwareVersion', 'Theory-GuidedModel']},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/EACS_7',\n",
+ " 'type': ['SoftwareVersion', 'Theory-GuidedModel']},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/EACS_6.0',\n",
+ " 'type': ['SoftwareVersion', 'Theory-GuidedModel']}],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/ECONOMIC_AGGREGATE_CROP_SUPPLY',\n",
+ " 'keywords': ['economy; land use; crop production; fertilizer costs'],\n",
+ " 'label': ['Economic aggregate crop supply response model (EACS)'],\n",
+ " 'logo': [{'id': 'https://w3id.org/okn/i/mint/eacs_logo', 'type': 'Image'}],\n",
+ " 'operating_systems': ['Windows;Unix'],\n",
+ " 'publisher': [{'id': 'https://w3id.org/okn/i/mint/virginia_tech',\n",
+ " 'type': 'sd:Organization'}],\n",
+ " 'type': ['Model', 'Theory-GuidedModel']},\n",
+ " {'author': ['https://w3id.org/okn/i/mint/khider_deborah'],\n",
+ " 'date_created': ['2019'],\n",
+ " 'date_published': ['2019'],\n",
+ " 'description': ['This Python model calculates a flood severity index based on '\n",
+ " 'the annual maxima of volumetric flow for the period '\n",
+ " '1981-2017 obtained from the GloFAS data '\n",
+ " '(http://www.globalfloods.eu/). The thresholds were estimated '\n",
+ " 'from a Gumbel distribution using the methods of L-moments. '\n",
+ " 'The severity is based on a 2-yr return period (medium), 5-yr '\n",
+ " 'return period (high), and 20-yr return period (severe).'],\n",
+ " 'had_primary_source': [{'id': 'https://github.com/mintproject/FloodSeverityIndex',\n",
+ " 'type': 'Thing'}],\n",
+ " 'has_contact_person': [{'id': 'https://w3id.org/okn/i/mint/khider_deborah',\n",
+ " 'type': 'sd:Person'}],\n",
+ " 'has_documentation': ['https://github.com/mintproject/FloodSeverityIndex/blob/master/README.md'],\n",
+ " 'has_download_url': ['https://github.com/mintproject/FloodSeverityIndex'],\n",
+ " 'has_grid': [{'id': 'https://w3id.org/okn/i/mint/fsi_grid',\n",
+ " 'type': ['Grid', 'SpatiallyDistributedGrid']}],\n",
+ " 'has_installation_instructions': ['https://github.com/mintproject/FloodSeverityIndex/blob/master/README.md'],\n",
+ " 'has_model_category': ['Hydrology'],\n",
+ " 'has_purpose': ['flood severity index calculation'],\n",
+ " 'has_source_code': [{'id': 'https://w3id.org/okn/i/mint/fsi_source',\n",
+ " 'type': 'SourceCode'}],\n",
+ " 'has_version': [{'id': 'https://w3id.org/okn/i/mint/fsi_1.0',\n",
+ " 'type': ['SoftwareVersion', 'EmpiricalModel']}],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/FSI',\n",
+ " 'keywords': ['hydrology; flood; index'],\n",
+ " 'label': ['Flood Severity Index model'],\n",
+ " 'license': ['https://github.com/mintproject/FloodSeverityIndex/blob/master/LICENSE'],\n",
+ " 'logo': [{'id': 'https://w3id.org/okn/i/mint/fsi_logo', 'type': 'Image'}],\n",
+ " 'operating_systems': ['Unix'],\n",
+ " 'software_requirements': [' xarray = 0.12.1 (Do not update to the latest '\n",
+ " 'version); numpy; cartopy; panda; '\n",
+ " 'matplotlib; imageio\\n'],\n",
+ " 'type': ['Model', 'EmpiricalModel'],\n",
+ " 'useful_for_calculating_index': [{'id': 'http://www.geoscienceontology.org/svo/svl/variable#channel%40context%7Ein_%28water_flowing%29__flood_volume-flux_severity_index',\n",
+ " 'type': ['http://www.geoscienceontology.org/svo/svu#Variable',\n",
+ " 'http://www.w3.org/2002/07/owl#NamedIndividual']}]},\n",
+ " {'author': [{'id': 'https://w3id.org/okn/i/mint/taborton_david',\n",
+ " 'type': 'sd:Person'}],\n",
+ " 'date_created': ['2010'],\n",
+ " 'description': ['The Height Above the Nearest Drainage (HAND) is a model that '\n",
+ " 'normalizes topography according to the local relative '\n",
+ " 'heights found along a given drainage network. Model output '\n",
+ " 'shows a high correlation with the depth of the water table '\n",
+ " 'in a region and provide an accurate spatial representation '\n",
+ " 'of soil water environments. HAND takes as input a Digital '\n",
+ " 'Elevation Map of a given region, producing as outputa '\n",
+ " 'normalized draining potential (or relative vertical '\n",
+ " 'flowpath-distance) to the nearest drainages.'],\n",
+ " 'had_primary_source': [{'id': 'https://www.hydroshare.org/resource/c17a0da1bd1f4489b4e72e0eaf2ae475/',\n",
+ " 'type': 'Thing'}],\n",
+ " 'has_documentation': ['http://hydrology.usu.edu/taudem/taudem5/documentation.html'],\n",
+ " 'has_download_url': ['https://github.com/dtarb/TauDEM'],\n",
+ " 'has_explanation_diagram': [{'id': 'https://w3id.org/okn/i/mint/hand_explanation',\n",
+ " 'type': 'Image'},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/hand_explanation2',\n",
+ " 'type': 'Image'}],\n",
+ " 'has_funding': [{'id': 'https://w3id.org/okn/i/mint/HAND_funding',\n",
+ " 'type': 'FundingInformation'}],\n",
+ " 'has_model_category': ['Hydrology'],\n",
+ " 'has_purpose': ['Flooding map generation'],\n",
+ " 'has_sample_visualization': [{'id': 'https://w3id.org/okn/i/mint/hand_sample_visualization',\n",
+ " 'type': 'Visualization'},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/hand_travis',\n",
+ " 'type': 'Visualization'}],\n",
+ " 'has_version': [{'id': 'https://w3id.org/okn/i/mint/HANDv1',\n",
+ " 'type': ['SoftwareVersion', 'EmpiricalModel']}],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/HAND',\n",
+ " 'keywords': ['Relative height;Normalization of topography;Gravitational '\n",
+ " 'potential;Draining potential;Flow path;Drainage network'],\n",
+ " 'label': ['Height Above Nearest Drainage'],\n",
+ " 'logo': [{'id': 'https://w3id.org/okn/i/mint/hand_logo', 'type': 'Image'}],\n",
+ " 'operating_systems': ['Windows;Unix'],\n",
+ " 'publisher': [{'id': 'https://w3id.org/okn/i/mint/utah_university',\n",
+ " 'type': 'sd:Organization'}],\n",
+ " 'type': ['EmpiricalModel', 'Model'],\n",
+ " 'useful_for_calculating_index': [{'id': 'https://w3id.org/okn/i/mint/FLOODING_CONTOUR',\n",
+ " 'type': ['sdm:Index']}]},\n",
+ " {'description': ['The Kimetrica model simulates land use'],\n",
+ " 'has_funding': [{'id': 'https://w3id.org/okn/i/mint/KIMETRICA_LAND_USE_funding',\n",
+ " 'type': 'FundingInformation'}],\n",
+ " 'has_model_category': ['Land Use'],\n",
+ " 'has_version': [{'id': 'https://w3id.org/okn/i/mint/kimetrica_0.0',\n",
+ " 'type': 'SoftwareVersion'}],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/KIMETRICA_LAND_USE',\n",
+ " 'label': ['Kimetrica land use model'],\n",
+ " 'logo': [{'id': 'https://w3id.org/okn/i/mint/kimetrica_logo',\n",
+ " 'type': 'Image'}],\n",
+ " 'publisher': [{'id': 'https://w3id.org/okn/i/mint/kimetrica',\n",
+ " 'type': 'sd:Organization'}],\n",
+ " 'type': ['Model']},\n",
+ " {'author': ['https://w3id.org/okn/i/mint/usgs'],\n",
+ " 'citation': ['Harbaugh; A. W. (2005). MODFLOW-2005; the US Geological Survey '\n",
+ " 'modular ground-water model: the ground-water flow process (pp. '\n",
+ " '6-A16). Reston; VA: US Department of the Interior; US '\n",
+ " 'Geological Survey.'],\n",
+ " 'date_created': ['1983'],\n",
+ " 'description': ['Modflow is a popular open-source groundwater flow model '\n",
+ " 'distributed by the U.S. Geological survey'],\n",
+ " 'has_documentation': ['https://water.usgs.gov/ogw/modflow/'],\n",
+ " 'has_download_url': ['https://www.usgs.gov/software/modflow-2005-usgs-three-dimensional-finite-difference-ground-water-model'],\n",
+ " 'has_funding': [{'id': 'https://w3id.org/okn/i/mint/MODFLOW_funding',\n",
+ " 'type': 'FundingInformation'}],\n",
+ " 'has_installation_instructions': ['https://water.usgs.gov/water-resources/software/MODFLOW-2005/readme.txt'],\n",
+ " 'has_model_category': ['Hydrology'],\n",
+ " 'has_purpose': ['water budget estimation; total pumping bugdets'],\n",
+ " 'has_version': [{'id': 'https://w3id.org/okn/i/mint/modflow_2005',\n",
+ " 'type': ['SoftwareVersion', 'Theory-GuidedModel']}],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/MODFLOW',\n",
+ " 'keywords': ['groundwater modeling; steady and nonsteady flow; areal '\n",
+ " 'recharge; evapotranspiration; flow to drains; flow through '\n",
+ " 'river beds'],\n",
+ " 'label': ['MODFLOW'],\n",
+ " 'license': ['https://creativecommons.org/publicdomain/zero/1.0/'],\n",
+ " 'logo': [{'id': 'https://w3id.org/okn/i/mint/modflow_logo', 'type': 'Image'}],\n",
+ " 'operating_systems': ['Windows;Unix'],\n",
+ " 'publisher': [{'id': 'https://w3id.org/okn/i/mint/usgs',\n",
+ " 'type': 'sd:Organization'}],\n",
+ " 'reference_publication': ['Harbaugh, A. W. (2005). MODFLOW-2005, the US '\n",
+ " 'Geological Survey modular ground-water model: the '\n",
+ " 'ground-water flow process (pp. 6-A16). Reston, VA: '\n",
+ " 'US Department of the Interior, US Geological '\n",
+ " 'Survey.'],\n",
+ " 'type': ['Model', 'Theory-GuidedModel'],\n",
+ " 'useful_for_calculating_index': [{'id': 'https://w3id.org/okn/i/mint/STREAMFLOW_LOCATION',\n",
+ " 'type': ['sdm:Index']},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/TOTAL_WATER_STORAGE',\n",
+ " 'type': ['sdm:Index']},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/WATER_TABLE__LEVEL_HEIGHT',\n",
+ " 'type': ['sdm:Index']}],\n",
+ " 'website': ['https://www.usgs.gov/mission-areas/water-resources/science/modflow-and-related-programs']},\n",
+ " {'author': [{'id': 'https://w3id.org/okn/i/mint/shu_lele', 'type': 'sd:Person'},\n",
+ " 'https://w3id.org/okn/i/mint/duffy_christopher'],\n",
+ " 'citation': ['Yu; Xuan; Christopher Duffy; Gopal Bhatt; Yuning Shi; L. N. '\n",
+ " 'Leonard; and Mukesh Kumar. \"Real-Time Implementation of the '\n",
+ " 'Penn State Integrated Hydrologic Modeling System: The Shale '\n",
+ " 'Hills Critical Zone Observatory.\" In AGU Fall Meeting '\n",
+ " 'Abstracts; vol. 1; p. 1149. 2010'],\n",
+ " 'date_created': ['2007'],\n",
+ " 'description': ['The Penn State Integrated Hydrologic Modeling System (PIHM) '\n",
+ " 'is a finite volume code used for simulating the distributed '\n",
+ " 'hydrologic states of a given watershed or river basin. PIHM '\n",
+ " 'accounts for many physical processes including: land surface '\n",
+ " 'processes (evaporation- transpiration, canopy interception, '\n",
+ " 'snowmelt) overland/channel flow coupled to groundwater flow. '\n",
+ " 'PIHM can include reservoirs and flow control structures. '\n",
+ " 'PIHM applies adaptive time stepping and uses the method of '\n",
+ " 'lines to solve the system of implicit equations.'],\n",
+ " 'had_primary_source': [{'id': 'http://www.pihm.psu.edu/', 'type': 'Thing'}],\n",
+ " 'has_assumption': ['PIHM uses a finite volume numerical proceedure that '\n",
+ " 'resolves the domain into triangular prisms from bottom of '\n",
+ " 'groundwater to top of canopy.The state variables within '\n",
+ " 'each prism are fully coupled internally and with adjacent '\n",
+ " 'cells such that a mass balance is assured at each cell '\n",
+ " 'and globally across the domain.'],\n",
+ " 'has_contact_person': [{'id': 'https://w3id.org/okn/i/mint/duffy_christopher',\n",
+ " 'type': 'sd:Person'}],\n",
+ " 'has_documentation': ['http://www.pihm.psu.edu'],\n",
+ " 'has_download_url': ['http://www.pihm.psu.edu/pihmgis_downloads.html'],\n",
+ " 'has_example': ['An example of the PIHM Model for the Pongo basin in South '\n",
+ " 'Sudan can be browsed by using the following Notebook '\n",
+ " '(Wolfram Mathematica CDF player is needed to visualize and '\n",
+ " 'change the results of the notebook): '\n",
+ " 'https://files.mint.isi.edu/s/oLw76x6chUNXOc0/download\\n'\n",
+ " '\\n'\n",
+ " 'Alternatively, you may browse the following PDF for a '\n",
+ " 'non-interactive version of the example: '\n",
+ " 'https://files.mint.isi.edu/s/tmn7sRjjPh7BZvK/download'],\n",
+ " 'has_explanation_diagram': [{'id': 'https://w3id.org/okn/i/mint/pihm_forrester',\n",
+ " 'type': 'Image'},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/pihm_explanation_diagram',\n",
+ " 'type': 'Image'}],\n",
+ " 'has_funding': [{'id': 'https://w3id.org/okn/i/mint/PIHM_funding',\n",
+ " 'type': 'FundingInformation'}],\n",
+ " 'has_grid': [{'id': 'https://w3id.org/okn/i/mint/pihm_grid_general',\n",
+ " 'type': ['Grid', 'SpatiallyDistributedGrid']}],\n",
+ " 'has_installation_instructions': ['http://www.pihm.psu.edu/Downloads/Doc/Installation_guide.pdf'],\n",
+ " 'has_model_category': ['Hydrology'],\n",
+ " 'has_purpose': ['surface water modeling; flooding prediction'],\n",
+ " 'has_sample_visualization': [{'id': 'https://w3id.org/okn/i/mint/pihm_sample_Pongo',\n",
+ " 'type': 'Visualization'}],\n",
+ " 'has_source_code': [{'id': 'https://w3id.org/okn/i/mint/pihm_source',\n",
+ " 'type': 'SourceCode'}],\n",
+ " 'has_version': [{'id': 'https://w3id.org/okn/i/mint/pihm_v4',\n",
+ " 'type': ['SoftwareVersion', 'Theory-GuidedModel']},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/pihm_2.2',\n",
+ " 'type': ['SoftwareVersion', 'Theory-GuidedModel']}],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/PIHM',\n",
+ " 'keywords': ['channel routing; surface overland flow; subsurface flow; '\n",
+ " 'interception; snow melt; evapotranspiration; semi-discrete '\n",
+ " 'approach'],\n",
+ " 'label': ['Penn State Integrated Hydrology Model (PIHM)'],\n",
+ " 'license': ['https://creativecommons.org/publicdomain/zero/1.0/'],\n",
+ " 'logo': [{'id': 'https://w3id.org/okn/i/mint/pihm_logo', 'type': 'Image'}],\n",
+ " 'operating_systems': ['Windows; Mac; Linux'],\n",
+ " 'publisher': [{'id': 'https://w3id.org/okn/i/mint/penn_state_university',\n",
+ " 'type': 'sd:Organization'}],\n",
+ " 'reference_publication': ['Yu; Xuan; Christopher Duffy; Gopal Bhatt; Yuning '\n",
+ " 'Shi; L. N. Leonard; and Mukesh Kumar. \"Real-Time '\n",
+ " 'Implementation of the Penn State Integrated '\n",
+ " 'Hydrologic Modeling System: The Shale Hills '\n",
+ " 'Critical Zone Observatory.\" In AGU Fall Meeting '\n",
+ " 'Abstracts; vol. 1; p. 1149. 2010'],\n",
+ " 'short_description': ['The Penn State Integrated Hydrologic Modeling System '\n",
+ " '(PIHM) is a program used for simulating the '\n",
+ " 'distributed hydrolic states of a given watershed.'],\n",
+ " 'software_requirements': ['sundials2.2.0'],\n",
+ " 'type': ['Theory-GuidedModel', 'Model'],\n",
+ " 'useful_for_calculating_index': [{'id': 'http://www.geoscienceontology.org/svo/svl/variable#channel%7Estream%40context%7Ein_%28water%40role%7Emain_flowing%29__flow_duration_index',\n",
+ " 'type': ['http://www.geoscienceontology.org/svo/svu#Variable',\n",
+ " 'http://www.w3.org/2002/07/owl#NamedIndividual']}],\n",
+ " 'website': ['http://www.pihm.psu.edu/index.html']},\n",
+ " {'author': ['https://w3id.org/okn/i/mint/engel_bernard'],\n",
+ " 'citation': ['Bieger; Katrin; Arnold; Jeffrey G.; Rathjens; Hendrik; White; '\n",
+ " 'Michael J.; Bosch; David D.; Allen; Peter M.; Volk; Martin; and '\n",
+ " 'Srinivasan; Raghavan; 2017. Introduction to SWAT+; a Completely '\n",
+ " 'Restructured Version of the Soil and Water Assessment Tool. '\n",
+ " 'Journal of the American Water Resources Association (JAWRA) 53( '\n",
+ " '1): 115-130.'],\n",
+ " 'date_created': ['1993'],\n",
+ " 'description': ['The Soil & Water Assessment Tool (SWAT) is a small watershed '\n",
+ " 'to river basin-scale model used to simulate the quality and '\n",
+ " 'quantity of surface and ground water and predict the '\n",
+ " 'environmental impact of land use; land management practices '\n",
+ " 'and climate change (https://swat.tamu.edu/ 2019)'],\n",
+ " 'had_primary_source': [{'id': 'https://w3id.org/okn/i/mint/https://www.usgs.gov/mission-areas/water-resources/science/modflow-and-related-programs',\n",
+ " 'type': 'Thing'},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/https://en.wikipedia.org/wiki/MODFLOW',\n",
+ " 'type': 'Thing'}],\n",
+ " 'has_documentation': ['https://swat.tamu.edu/docs/'],\n",
+ " 'has_download_url': ['https://plus.swat.tamu.edu/downloads/swatplustools-installer-1.2.0.zip'],\n",
+ " 'has_funding': [{'id': 'https://w3id.org/okn/i/mint/SWAT_funding',\n",
+ " 'type': 'FundingInformation'}],\n",
+ " 'has_grid': [{'id': 'https://w3id.org/okn/i/mint/swat_grid',\n",
+ " 'type': ['Grid']}],\n",
+ " 'has_installation_instructions': ['https://swatplus.gitbook.io/docs/installation'],\n",
+ " 'has_model_category': ['Hydrology'],\n",
+ " 'has_source_code': [{'id': 'https://w3id.org/okn/i/mint/swat_source',\n",
+ " 'type': 'SourceCode'}],\n",
+ " 'has_version': [{'id': 'https://w3id.org/okn/i/mint/swat_1.2.0',\n",
+ " 'type': 'SoftwareVersion'}],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/SWAT',\n",
+ " 'keywords': ['Soil; watershed;surface water; ground water;environmental '\n",
+ " 'impacts; land use; land management; climate change;soil '\n",
+ " 'erosion; source pollution'],\n",
+ " 'label': ['The Soil & Water Assessment Tool (SWAT)'],\n",
+ " 'logo': [{'id': 'https://w3id.org/okn/i/mint/swat_logo', 'type': 'Image'}],\n",
+ " 'operating_systems': ['Windows;Unix'],\n",
+ " 'publisher': [{'id': 'https://w3id.org/okn/i/mint/texas_university',\n",
+ " 'type': 'sd:Organization'}],\n",
+ " 'reference_publication': ['Arnold Jeffrey G. et al. \"SWAT: Model use; '\n",
+ " 'calibration and validation.\" Transactions of the '\n",
+ " 'ASABE 55.4 (2012): 1491-1508.'],\n",
+ " 'short_description': ['SWAT is a river basin scale model developed to '\n",
+ " 'quantify the impact of land management practices in '\n",
+ " 'large and complex watersheds.'],\n",
+ " 'software_requirements': ['QGIS 3'],\n",
+ " 'type': ['Model', 'Theory-GuidedModel'],\n",
+ " 'website': ['https://swat.tamu.edu/']},\n",
+ " {'author': [{'id': 'https://w3id.org/okn/i/mint/peckham_scott',\n",
+ " 'type': 'sd:Person'}],\n",
+ " 'citation': ['Peckham; S. D. \"Geomorphometry and spatial hydrologic '\n",
+ " 'modelling.\" Developments in Soil Science 33 (2009): 579-602.'],\n",
+ " 'contributor': [{'id': 'https://w3id.org/okn/i/mint/bolton_bob',\n",
+ " 'type': 'sd:Person'},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/liljedahl_anna',\n",
+ " 'type': 'sd:Person'},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/hinzman_larry',\n",
+ " 'type': 'sd:Person'},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/over_thomas',\n",
+ " 'type': 'sd:Person'}],\n",
+ " 'date_created': ['2002'],\n",
+ " 'description': ['Topoflow is a powerful spatially-distributed hydrologic '\n",
+ " 'model for various physical processes in a watershed, with '\n",
+ " 'the goal of accurately predicting how various hydrologic '\n",
+ " 'variables will evolve in time in response to climatic '\n",
+ " 'forcings.'],\n",
+ " 'had_primary_source': [{'id': 'https://csdms.colorado.edu/wiki/Model:TopoFlow',\n",
+ " 'type': 'Thing'}],\n",
+ " 'has_contact_person': ['https://w3id.org/okn/i/mint/pecham_scott'],\n",
+ " 'has_documentation': ['https://github.com/peckhams/topoflow/blob/master/docs/'],\n",
+ " 'has_download_url': ['https://csdms.colorado.edu/pub/models/doi-source-code/topoflow-10.1594.IEDA.100174-3.1.0.tar.gz'],\n",
+ " 'has_funding': [{'id': 'https://w3id.org/okn/i/mint/TOPOFLOW_funding',\n",
+ " 'type': 'FundingInformation'}],\n",
+ " 'has_installation_instructions': ['https://csdms.colorado.edu/wiki/Model:TopoFlow'],\n",
+ " 'has_model_category': ['Hydrology'],\n",
+ " 'has_sample_visualization': [{'id': 'https://w3id.org/okn/i/mint/topoflow_vis',\n",
+ " 'type': 'Visualization'}],\n",
+ " 'has_source_code': [{'id': 'https://w3id.org/okn/i/mint/topoflow_source',\n",
+ " 'type': 'SourceCode'}],\n",
+ " 'has_version': [{'id': 'https://w3id.org/okn/i/mint/topoflow_3.6',\n",
+ " 'type': ['SoftwareVersion', 'Theory-GuidedModel']},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/topoflow_3.5',\n",
+ " 'type': ['SoftwareVersion', 'Theory-GuidedModel']}],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/TOPOFLOW',\n",
+ " 'keywords': ['snowmelt;precipitation;evapotranspiration;infiltration;channel/overland '\n",
+ " 'flow;shallow subsurface flow;flow diversions'],\n",
+ " 'label': ['TopoFlow'],\n",
+ " 'logo': [{'id': 'https://w3id.org/okn/i/mint/topoflow_logo', 'type': 'Image'}],\n",
+ " 'operating_systems': ['Windows;Unix'],\n",
+ " 'publisher': [{'id': 'https://w3id.org/okn/i/mint/colorado_university',\n",
+ " 'type': 'sd:Organization'}],\n",
+ " 'reference_publication': ['Peckham; S. D. \"Geomorphometry and spatial '\n",
+ " 'hydrologic modelling.\" Developments in Soil '\n",
+ " 'Science 33 (2009): 579-602.'],\n",
+ " 'software_requirements': ['IDL 6.0 or 6.3'],\n",
+ " 'type': ['Theory-GuidedModel', 'Model'],\n",
+ " 'useful_for_calculating_index': [{'id': 'https://w3id.org/okn/i/mint/DOWNSTREAM_VOLUME_FLOW_RATE',\n",
+ " 'type': ['sdm:Index']}],\n",
+ " 'website': ['https://csdms.colorado.edu/wiki/Model:TopoFlow']},\n",
+ " {'author': ['https://w3id.org/okn/i/mint/somer_philipp',\n",
+ " 'https://w3id.org/okn/i/mint/kaplan_jed'],\n",
+ " 'citation': ['Sommer; P. S. and Kaplan; J. O.: A globally calibrated scheme '\n",
+ " 'for generating daily meteorology from monthly statistics: '\n",
+ " 'Global-WGEN (GWGEN) v1.0; Geosci. Model Dev.; 10; 3771-3791; '\n",
+ " 'DOI: 10.5194/gmd-10-3771-2017; 2017'],\n",
+ " 'date_created': ['2017'],\n",
+ " 'date_published': ['2017'],\n",
+ " 'description': ['WGEN: A global weather generator for daily data derived from '\n",
+ " 'the Global Weather Generator (GWGEN)'],\n",
+ " 'had_primary_source': [{'id': 'https://github.com/ARVE-Research/gwgen',\n",
+ " 'type': 'Thing'}],\n",
+ " 'has_contact_person': [{'id': 'https://w3id.org/okn/i/mint/khider_deborah',\n",
+ " 'type': 'sd:Person'}],\n",
+ " 'has_documentation': ['https://arve-research.github.io/gwgen/'],\n",
+ " 'has_download_url': ['https://github.com/ARVE-Research/gwgen/releases'],\n",
+ " 'has_funding': [{'id': 'https://w3id.org/okn/i/mint/WGEN_funding',\n",
+ " 'type': 'FundingInformation'}],\n",
+ " 'has_installation_instructions': ['https://arve-research.github.io/gwgen/install.html'],\n",
+ " 'has_model_category': ['Weather'],\n",
+ " 'has_version': [{'id': 'https://w3id.org/okn/i/mint/wgen_1.0.1',\n",
+ " 'type': ['SoftwareVersion', 'EmpiricalModel']}],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/WGEN',\n",
+ " 'keywords': ['weather generator; climatology; meteorology; global '\n",
+ " 'meteorological database; temperature; precipitation; cloud '\n",
+ " 'cover; windspeed'],\n",
+ " 'label': ['WGEN'],\n",
+ " 'logo': [{'id': 'https://w3id.org/okn/i/mint/wgen_logo', 'type': 'Image'}],\n",
+ " 'operating_systems': ['Windows;Unix'],\n",
+ " 'type': ['Model', 'EmpiricalModel']}]\n"
+ ]
+ }
+ ],
+ "source": [
+ "pprint(models)"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 11,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "+-------------+----------------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+=============+================================================================+\n",
+ "| description | ['Cycles simulates the productivity and the water,carbon and |\n",
+ "| | nitrogen balance of soil-crop systems subject to climate |\n",
+ "| | conditions and a large array of management constraints. |\n",
+ "| | Overall the model is set up to be daily. Some processes such |\n",
+ "| | as water balance are temporally nested (subdaily)\\n.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/CYCLES |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "\n",
+ "\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+=============+================================================================+\n",
+ "| description | ['Cycles simulates the productivity and the water,carbon and |\n",
+ "| | nitrogen balance of soil-crop systems subject to climate |\n",
+ "| | conditions and a large array of management constraints. |\n",
+ "| | Overall the model is set up to be daily. Some processes such |\n",
+ "| | as water balance are temporally nested (subdaily)\\n.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/CYCLES |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['ClimComp is a Python routine for comparing the seasonal |\n",
+ "| | prediction with the average climatology'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/ClimComp |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "\n",
+ "\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+=============+================================================================+\n",
+ "| description | ['Cycles simulates the productivity and the water,carbon and |\n",
+ "| | nitrogen balance of soil-crop systems subject to climate |\n",
+ "| | conditions and a large array of management constraints. |\n",
+ "| | Overall the model is set up to be daily. Some processes such |\n",
+ "| | as water balance are temporally nested (subdaily)\\n.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/CYCLES |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['ClimComp is a Python routine for comparing the seasonal |\n",
+ "| | prediction with the average climatology'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/ClimComp |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Model to calculate various drought indices from |\n",
+ "| | precipitation/temperature data.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/DSI |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "\n",
+ "\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+=============+================================================================+\n",
+ "| description | ['Cycles simulates the productivity and the water,carbon and |\n",
+ "| | nitrogen balance of soil-crop systems subject to climate |\n",
+ "| | conditions and a large array of management constraints. |\n",
+ "| | Overall the model is set up to be daily. Some processes such |\n",
+ "| | as water balance are temporally nested (subdaily)\\n.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/CYCLES |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['ClimComp is a Python routine for comparing the seasonal |\n",
+ "| | prediction with the average climatology'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/ClimComp |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Model to calculate various drought indices from |\n",
+ "| | precipitation/temperature data.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/DSI |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Decision Support System for Agrotechnology Transfer (DSSAT) |\n",
+ "| | is software application program that comprises dynamic crop |\n",
+ "| | growth simulation models for over 40 crops. DSSAT is supported |\n",
+ "| | by a range of utilities and applications for weather, soil, |\n",
+ "| | genetic, crop management and observational experimental data. |\n",
+ "| | Includes example data sets for all crop models. The crop |\n",
+ "| | simulation models simulate growth, development and yield as a |\n",
+ "| | function of the soil-plant-atmosphere dynamics |\n",
+ "| | (https://dssat.net/. 2019)'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/DSSAT |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "\n",
+ "\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+=============+================================================================+\n",
+ "| description | ['Cycles simulates the productivity and the water,carbon and |\n",
+ "| | nitrogen balance of soil-crop systems subject to climate |\n",
+ "| | conditions and a large array of management constraints. |\n",
+ "| | Overall the model is set up to be daily. Some processes such |\n",
+ "| | as water balance are temporally nested (subdaily)\\n.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/CYCLES |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['ClimComp is a Python routine for comparing the seasonal |\n",
+ "| | prediction with the average climatology'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/ClimComp |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Model to calculate various drought indices from |\n",
+ "| | precipitation/temperature data.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/DSI |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Decision Support System for Agrotechnology Transfer (DSSAT) |\n",
+ "| | is software application program that comprises dynamic crop |\n",
+ "| | growth simulation models for over 40 crops. DSSAT is supported |\n",
+ "| | by a range of utilities and applications for weather, soil, |\n",
+ "| | genetic, crop management and observational experimental data. |\n",
+ "| | Includes example data sets for all crop models. The crop |\n",
+ "| | simulation models simulate growth, development and yield as a |\n",
+ "| | function of the soil-plant-atmosphere dynamics |\n",
+ "| | (https://dssat.net/. 2019)'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/DSSAT |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Aggregate crop supply response model (EACS) describes an |\n",
+ "| | aggregate crop supply response model for a region (tested for |\n",
+ "| | South Sudan). This is a regional-scale aggregate model of |\n",
+ "| | agricultural supply for a specified set of crops (cassava, |\n",
+ "| | groundnuts, maize, sesame seed, and sorghum).'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/ECONOMIC_AGGREGATE_CROP_SUPPLY |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "\n",
+ "\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+=============+================================================================+\n",
+ "| description | ['Cycles simulates the productivity and the water,carbon and |\n",
+ "| | nitrogen balance of soil-crop systems subject to climate |\n",
+ "| | conditions and a large array of management constraints. |\n",
+ "| | Overall the model is set up to be daily. Some processes such |\n",
+ "| | as water balance are temporally nested (subdaily)\\n.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/CYCLES |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['ClimComp is a Python routine for comparing the seasonal |\n",
+ "| | prediction with the average climatology'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/ClimComp |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Model to calculate various drought indices from |\n",
+ "| | precipitation/temperature data.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/DSI |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Decision Support System for Agrotechnology Transfer (DSSAT) |\n",
+ "| | is software application program that comprises dynamic crop |\n",
+ "| | growth simulation models for over 40 crops. DSSAT is supported |\n",
+ "| | by a range of utilities and applications for weather, soil, |\n",
+ "| | genetic, crop management and observational experimental data. |\n",
+ "| | Includes example data sets for all crop models. The crop |\n",
+ "| | simulation models simulate growth, development and yield as a |\n",
+ "| | function of the soil-plant-atmosphere dynamics |\n",
+ "| | (https://dssat.net/. 2019)'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/DSSAT |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Aggregate crop supply response model (EACS) describes an |\n",
+ "| | aggregate crop supply response model for a region (tested for |\n",
+ "| | South Sudan). This is a regional-scale aggregate model of |\n",
+ "| | agricultural supply for a specified set of crops (cassava, |\n",
+ "| | groundnuts, maize, sesame seed, and sorghum).'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/ECONOMIC_AGGREGATE_CROP_SUPPLY |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['This Python model calculates a flood severity index based on |\n",
+ "| | the annual maxima of volumetric flow for the period 1981-2017 |\n",
+ "| | obtained from the GloFAS data (http://www.globalfloods.eu/). |\n",
+ "| | The thresholds were estimated from a Gumbel distribution using |\n",
+ "| | the methods of L-moments. The severity is based on a 2-yr |\n",
+ "| | return period (medium), 5-yr return period (high), and 20-yr |\n",
+ "| | return period (severe).'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/FSI |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "\n",
+ "\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+=============+================================================================+\n",
+ "| description | ['Cycles simulates the productivity and the water,carbon and |\n",
+ "| | nitrogen balance of soil-crop systems subject to climate |\n",
+ "| | conditions and a large array of management constraints. |\n",
+ "| | Overall the model is set up to be daily. Some processes such |\n",
+ "| | as water balance are temporally nested (subdaily)\\n.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/CYCLES |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['ClimComp is a Python routine for comparing the seasonal |\n",
+ "| | prediction with the average climatology'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/ClimComp |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Model to calculate various drought indices from |\n",
+ "| | precipitation/temperature data.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/DSI |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Decision Support System for Agrotechnology Transfer (DSSAT) |\n",
+ "| | is software application program that comprises dynamic crop |\n",
+ "| | growth simulation models for over 40 crops. DSSAT is supported |\n",
+ "| | by a range of utilities and applications for weather, soil, |\n",
+ "| | genetic, crop management and observational experimental data. |\n",
+ "| | Includes example data sets for all crop models. The crop |\n",
+ "| | simulation models simulate growth, development and yield as a |\n",
+ "| | function of the soil-plant-atmosphere dynamics |\n",
+ "| | (https://dssat.net/. 2019)'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/DSSAT |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Aggregate crop supply response model (EACS) describes an |\n",
+ "| | aggregate crop supply response model for a region (tested for |\n",
+ "| | South Sudan). This is a regional-scale aggregate model of |\n",
+ "| | agricultural supply for a specified set of crops (cassava, |\n",
+ "| | groundnuts, maize, sesame seed, and sorghum).'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/ECONOMIC_AGGREGATE_CROP_SUPPLY |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['This Python model calculates a flood severity index based on |\n",
+ "| | the annual maxima of volumetric flow for the period 1981-2017 |\n",
+ "| | obtained from the GloFAS data (http://www.globalfloods.eu/). |\n",
+ "| | The thresholds were estimated from a Gumbel distribution using |\n",
+ "| | the methods of L-moments. The severity is based on a 2-yr |\n",
+ "| | return period (medium), 5-yr return period (high), and 20-yr |\n",
+ "| | return period (severe).'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/FSI |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Height Above the Nearest Drainage (HAND) is a model that |\n",
+ "| | normalizes topography according to the local relative heights |\n",
+ "| | found along a given drainage network. Model output shows a |\n",
+ "| | high correlation with the depth of the water table in a region |\n",
+ "| | and provide an accurate spatial representation of soil water |\n",
+ "| | environments. HAND takes as input a Digital Elevation Map of a |\n",
+ "| | given region, producing as outputa normalized draining |\n",
+ "| | potential (or relative vertical flowpath-distance) to the |\n",
+ "| | nearest drainages.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/HAND |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "\n",
+ "\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+=============+================================================================+\n",
+ "| description | ['Cycles simulates the productivity and the water,carbon and |\n",
+ "| | nitrogen balance of soil-crop systems subject to climate |\n",
+ "| | conditions and a large array of management constraints. |\n",
+ "| | Overall the model is set up to be daily. Some processes such |\n",
+ "| | as water balance are temporally nested (subdaily)\\n.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/CYCLES |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['ClimComp is a Python routine for comparing the seasonal |\n",
+ "| | prediction with the average climatology'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/ClimComp |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Model to calculate various drought indices from |\n",
+ "| | precipitation/temperature data.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/DSI |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Decision Support System for Agrotechnology Transfer (DSSAT) |\n",
+ "| | is software application program that comprises dynamic crop |\n",
+ "| | growth simulation models for over 40 crops. DSSAT is supported |\n",
+ "| | by a range of utilities and applications for weather, soil, |\n",
+ "| | genetic, crop management and observational experimental data. |\n",
+ "| | Includes example data sets for all crop models. The crop |\n",
+ "| | simulation models simulate growth, development and yield as a |\n",
+ "| | function of the soil-plant-atmosphere dynamics |\n",
+ "| | (https://dssat.net/. 2019)'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/DSSAT |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Aggregate crop supply response model (EACS) describes an |\n",
+ "| | aggregate crop supply response model for a region (tested for |\n",
+ "| | South Sudan). This is a regional-scale aggregate model of |\n",
+ "| | agricultural supply for a specified set of crops (cassava, |\n",
+ "| | groundnuts, maize, sesame seed, and sorghum).'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/ECONOMIC_AGGREGATE_CROP_SUPPLY |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['This Python model calculates a flood severity index based on |\n",
+ "| | the annual maxima of volumetric flow for the period 1981-2017 |\n",
+ "| | obtained from the GloFAS data (http://www.globalfloods.eu/). |\n",
+ "| | The thresholds were estimated from a Gumbel distribution using |\n",
+ "| | the methods of L-moments. The severity is based on a 2-yr |\n",
+ "| | return period (medium), 5-yr return period (high), and 20-yr |\n",
+ "| | return period (severe).'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/FSI |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Height Above the Nearest Drainage (HAND) is a model that |\n",
+ "| | normalizes topography according to the local relative heights |\n",
+ "| | found along a given drainage network. Model output shows a |\n",
+ "| | high correlation with the depth of the water table in a region |\n",
+ "| | and provide an accurate spatial representation of soil water |\n",
+ "| | environments. HAND takes as input a Digital Elevation Map of a |\n",
+ "| | given region, producing as outputa normalized draining |\n",
+ "| | potential (or relative vertical flowpath-distance) to the |\n",
+ "| | nearest drainages.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/HAND |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Kimetrica model simulates land use'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/KIMETRICA_LAND_USE |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "\n",
+ "\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+=============+================================================================+\n",
+ "| description | ['Cycles simulates the productivity and the water,carbon and |\n",
+ "| | nitrogen balance of soil-crop systems subject to climate |\n",
+ "| | conditions and a large array of management constraints. |\n",
+ "| | Overall the model is set up to be daily. Some processes such |\n",
+ "| | as water balance are temporally nested (subdaily)\\n.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/CYCLES |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['ClimComp is a Python routine for comparing the seasonal |\n",
+ "| | prediction with the average climatology'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/ClimComp |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Model to calculate various drought indices from |\n",
+ "| | precipitation/temperature data.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/DSI |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Decision Support System for Agrotechnology Transfer (DSSAT) |\n",
+ "| | is software application program that comprises dynamic crop |\n",
+ "| | growth simulation models for over 40 crops. DSSAT is supported |\n",
+ "| | by a range of utilities and applications for weather, soil, |\n",
+ "| | genetic, crop management and observational experimental data. |\n",
+ "| | Includes example data sets for all crop models. The crop |\n",
+ "| | simulation models simulate growth, development and yield as a |\n",
+ "| | function of the soil-plant-atmosphere dynamics |\n",
+ "| | (https://dssat.net/. 2019)'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/DSSAT |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Aggregate crop supply response model (EACS) describes an |\n",
+ "| | aggregate crop supply response model for a region (tested for |\n",
+ "| | South Sudan). This is a regional-scale aggregate model of |\n",
+ "| | agricultural supply for a specified set of crops (cassava, |\n",
+ "| | groundnuts, maize, sesame seed, and sorghum).'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/ECONOMIC_AGGREGATE_CROP_SUPPLY |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['This Python model calculates a flood severity index based on |\n",
+ "| | the annual maxima of volumetric flow for the period 1981-2017 |\n",
+ "| | obtained from the GloFAS data (http://www.globalfloods.eu/). |\n",
+ "| | The thresholds were estimated from a Gumbel distribution using |\n",
+ "| | the methods of L-moments. The severity is based on a 2-yr |\n",
+ "| | return period (medium), 5-yr return period (high), and 20-yr |\n",
+ "| | return period (severe).'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/FSI |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Height Above the Nearest Drainage (HAND) is a model that |\n",
+ "| | normalizes topography according to the local relative heights |\n",
+ "| | found along a given drainage network. Model output shows a |\n",
+ "| | high correlation with the depth of the water table in a region |\n",
+ "| | and provide an accurate spatial representation of soil water |\n",
+ "| | environments. HAND takes as input a Digital Elevation Map of a |\n",
+ "| | given region, producing as outputa normalized draining |\n",
+ "| | potential (or relative vertical flowpath-distance) to the |\n",
+ "| | nearest drainages.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/HAND |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Kimetrica model simulates land use'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/KIMETRICA_LAND_USE |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Modflow is a popular open-source groundwater flow model |\n",
+ "| | distributed by the U.S. Geological survey'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/MODFLOW |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "\n",
+ "\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+=============+================================================================+\n",
+ "| description | ['Cycles simulates the productivity and the water,carbon and |\n",
+ "| | nitrogen balance of soil-crop systems subject to climate |\n",
+ "| | conditions and a large array of management constraints. |\n",
+ "| | Overall the model is set up to be daily. Some processes such |\n",
+ "| | as water balance are temporally nested (subdaily)\\n.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/CYCLES |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['ClimComp is a Python routine for comparing the seasonal |\n",
+ "| | prediction with the average climatology'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/ClimComp |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Model to calculate various drought indices from |\n",
+ "| | precipitation/temperature data.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/DSI |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Decision Support System for Agrotechnology Transfer (DSSAT) |\n",
+ "| | is software application program that comprises dynamic crop |\n",
+ "| | growth simulation models for over 40 crops. DSSAT is supported |\n",
+ "| | by a range of utilities and applications for weather, soil, |\n",
+ "| | genetic, crop management and observational experimental data. |\n",
+ "| | Includes example data sets for all crop models. The crop |\n",
+ "| | simulation models simulate growth, development and yield as a |\n",
+ "| | function of the soil-plant-atmosphere dynamics |\n",
+ "| | (https://dssat.net/. 2019)'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/DSSAT |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Aggregate crop supply response model (EACS) describes an |\n",
+ "| | aggregate crop supply response model for a region (tested for |\n",
+ "| | South Sudan). This is a regional-scale aggregate model of |\n",
+ "| | agricultural supply for a specified set of crops (cassava, |\n",
+ "| | groundnuts, maize, sesame seed, and sorghum).'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/ECONOMIC_AGGREGATE_CROP_SUPPLY |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['This Python model calculates a flood severity index based on |\n",
+ "| | the annual maxima of volumetric flow for the period 1981-2017 |\n",
+ "| | obtained from the GloFAS data (http://www.globalfloods.eu/). |\n",
+ "| | The thresholds were estimated from a Gumbel distribution using |\n",
+ "| | the methods of L-moments. The severity is based on a 2-yr |\n",
+ "| | return period (medium), 5-yr return period (high), and 20-yr |\n",
+ "| | return period (severe).'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/FSI |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Height Above the Nearest Drainage (HAND) is a model that |\n",
+ "| | normalizes topography according to the local relative heights |\n",
+ "| | found along a given drainage network. Model output shows a |\n",
+ "| | high correlation with the depth of the water table in a region |\n",
+ "| | and provide an accurate spatial representation of soil water |\n",
+ "| | environments. HAND takes as input a Digital Elevation Map of a |\n",
+ "| | given region, producing as outputa normalized draining |\n",
+ "| | potential (or relative vertical flowpath-distance) to the |\n",
+ "| | nearest drainages.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/HAND |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Kimetrica model simulates land use'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/KIMETRICA_LAND_USE |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Modflow is a popular open-source groundwater flow model |\n",
+ "| | distributed by the U.S. Geological survey'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/MODFLOW |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Penn State Integrated Hydrologic Modeling System (PIHM) |\n",
+ "| | is a finite volume code used for simulating the distributed |\n",
+ "| | hydrologic states of a given watershed or river basin. PIHM |\n",
+ "| | accounts for many physical processes including: land surface |\n",
+ "| | processes (evaporation- transpiration, canopy interception, |\n",
+ "| | snowmelt) overland/channel flow coupled to groundwater flow. |\n",
+ "| | PIHM can include reservoirs and flow control structures. PIHM |\n",
+ "| | applies adaptive time stepping and uses the method of lines to |\n",
+ "| | solve the system of implicit equations.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/PIHM |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "\n",
+ "\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+=============+================================================================+\n",
+ "| description | ['Cycles simulates the productivity and the water,carbon and |\n",
+ "| | nitrogen balance of soil-crop systems subject to climate |\n",
+ "| | conditions and a large array of management constraints. |\n",
+ "| | Overall the model is set up to be daily. Some processes such |\n",
+ "| | as water balance are temporally nested (subdaily)\\n.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/CYCLES |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['ClimComp is a Python routine for comparing the seasonal |\n",
+ "| | prediction with the average climatology'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/ClimComp |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Model to calculate various drought indices from |\n",
+ "| | precipitation/temperature data.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/DSI |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Decision Support System for Agrotechnology Transfer (DSSAT) |\n",
+ "| | is software application program that comprises dynamic crop |\n",
+ "| | growth simulation models for over 40 crops. DSSAT is supported |\n",
+ "| | by a range of utilities and applications for weather, soil, |\n",
+ "| | genetic, crop management and observational experimental data. |\n",
+ "| | Includes example data sets for all crop models. The crop |\n",
+ "| | simulation models simulate growth, development and yield as a |\n",
+ "| | function of the soil-plant-atmosphere dynamics |\n",
+ "| | (https://dssat.net/. 2019)'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/DSSAT |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Aggregate crop supply response model (EACS) describes an |\n",
+ "| | aggregate crop supply response model for a region (tested for |\n",
+ "| | South Sudan). This is a regional-scale aggregate model of |\n",
+ "| | agricultural supply for a specified set of crops (cassava, |\n",
+ "| | groundnuts, maize, sesame seed, and sorghum).'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/ECONOMIC_AGGREGATE_CROP_SUPPLY |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['This Python model calculates a flood severity index based on |\n",
+ "| | the annual maxima of volumetric flow for the period 1981-2017 |\n",
+ "| | obtained from the GloFAS data (http://www.globalfloods.eu/). |\n",
+ "| | The thresholds were estimated from a Gumbel distribution using |\n",
+ "| | the methods of L-moments. The severity is based on a 2-yr |\n",
+ "| | return period (medium), 5-yr return period (high), and 20-yr |\n",
+ "| | return period (severe).'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/FSI |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Height Above the Nearest Drainage (HAND) is a model that |\n",
+ "| | normalizes topography according to the local relative heights |\n",
+ "| | found along a given drainage network. Model output shows a |\n",
+ "| | high correlation with the depth of the water table in a region |\n",
+ "| | and provide an accurate spatial representation of soil water |\n",
+ "| | environments. HAND takes as input a Digital Elevation Map of a |\n",
+ "| | given region, producing as outputa normalized draining |\n",
+ "| | potential (or relative vertical flowpath-distance) to the |\n",
+ "| | nearest drainages.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/HAND |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Kimetrica model simulates land use'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/KIMETRICA_LAND_USE |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Modflow is a popular open-source groundwater flow model |\n",
+ "| | distributed by the U.S. Geological survey'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/MODFLOW |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Penn State Integrated Hydrologic Modeling System (PIHM) |\n",
+ "| | is a finite volume code used for simulating the distributed |\n",
+ "| | hydrologic states of a given watershed or river basin. PIHM |\n",
+ "| | accounts for many physical processes including: land surface |\n",
+ "| | processes (evaporation- transpiration, canopy interception, |\n",
+ "| | snowmelt) overland/channel flow coupled to groundwater flow. |\n",
+ "| | PIHM can include reservoirs and flow control structures. PIHM |\n",
+ "| | applies adaptive time stepping and uses the method of lines to |\n",
+ "| | solve the system of implicit equations.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/PIHM |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Soil & Water Assessment Tool (SWAT) is a small watershed |\n",
+ "| | to river basin-scale model used to simulate the quality and |\n",
+ "| | quantity of surface and ground water and predict the |\n",
+ "| | environmental impact of land use; land management practices |\n",
+ "| | and climate change (https://swat.tamu.edu/ 2019)'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/SWAT |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "\n",
+ "\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+=============+================================================================+\n",
+ "| description | ['Cycles simulates the productivity and the water,carbon and |\n",
+ "| | nitrogen balance of soil-crop systems subject to climate |\n",
+ "| | conditions and a large array of management constraints. |\n",
+ "| | Overall the model is set up to be daily. Some processes such |\n",
+ "| | as water balance are temporally nested (subdaily)\\n.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/CYCLES |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['ClimComp is a Python routine for comparing the seasonal |\n",
+ "| | prediction with the average climatology'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/ClimComp |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Model to calculate various drought indices from |\n",
+ "| | precipitation/temperature data.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/DSI |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Decision Support System for Agrotechnology Transfer (DSSAT) |\n",
+ "| | is software application program that comprises dynamic crop |\n",
+ "| | growth simulation models for over 40 crops. DSSAT is supported |\n",
+ "| | by a range of utilities and applications for weather, soil, |\n",
+ "| | genetic, crop management and observational experimental data. |\n",
+ "| | Includes example data sets for all crop models. The crop |\n",
+ "| | simulation models simulate growth, development and yield as a |\n",
+ "| | function of the soil-plant-atmosphere dynamics |\n",
+ "| | (https://dssat.net/. 2019)'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/DSSAT |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Aggregate crop supply response model (EACS) describes an |\n",
+ "| | aggregate crop supply response model for a region (tested for |\n",
+ "| | South Sudan). This is a regional-scale aggregate model of |\n",
+ "| | agricultural supply for a specified set of crops (cassava, |\n",
+ "| | groundnuts, maize, sesame seed, and sorghum).'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/ECONOMIC_AGGREGATE_CROP_SUPPLY |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['This Python model calculates a flood severity index based on |\n",
+ "| | the annual maxima of volumetric flow for the period 1981-2017 |\n",
+ "| | obtained from the GloFAS data (http://www.globalfloods.eu/). |\n",
+ "| | The thresholds were estimated from a Gumbel distribution using |\n",
+ "| | the methods of L-moments. The severity is based on a 2-yr |\n",
+ "| | return period (medium), 5-yr return period (high), and 20-yr |\n",
+ "| | return period (severe).'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/FSI |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Height Above the Nearest Drainage (HAND) is a model that |\n",
+ "| | normalizes topography according to the local relative heights |\n",
+ "| | found along a given drainage network. Model output shows a |\n",
+ "| | high correlation with the depth of the water table in a region |\n",
+ "| | and provide an accurate spatial representation of soil water |\n",
+ "| | environments. HAND takes as input a Digital Elevation Map of a |\n",
+ "| | given region, producing as outputa normalized draining |\n",
+ "| | potential (or relative vertical flowpath-distance) to the |\n",
+ "| | nearest drainages.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/HAND |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Kimetrica model simulates land use'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/KIMETRICA_LAND_USE |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Modflow is a popular open-source groundwater flow model |\n",
+ "| | distributed by the U.S. Geological survey'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/MODFLOW |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Penn State Integrated Hydrologic Modeling System (PIHM) |\n",
+ "| | is a finite volume code used for simulating the distributed |\n",
+ "| | hydrologic states of a given watershed or river basin. PIHM |\n",
+ "| | accounts for many physical processes including: land surface |\n",
+ "| | processes (evaporation- transpiration, canopy interception, |\n",
+ "| | snowmelt) overland/channel flow coupled to groundwater flow. |\n",
+ "| | PIHM can include reservoirs and flow control structures. PIHM |\n",
+ "| | applies adaptive time stepping and uses the method of lines to |\n",
+ "| | solve the system of implicit equations.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/PIHM |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Soil & Water Assessment Tool (SWAT) is a small watershed |\n",
+ "| | to river basin-scale model used to simulate the quality and |\n",
+ "| | quantity of surface and ground water and predict the |\n",
+ "| | environmental impact of land use; land management practices |\n",
+ "| | and climate change (https://swat.tamu.edu/ 2019)'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/SWAT |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Topoflow is a powerful spatially-distributed hydrologic |\n",
+ "| | model for various physical processes in a watershed, with the |\n",
+ "| | goal of accurately predicting how various hydrologic variables |\n",
+ "| | will evolve in time in response to climatic forcings.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/TOPOFLOW |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "\n",
+ "\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+=============+================================================================+\n",
+ "| description | ['Cycles simulates the productivity and the water,carbon and |\n",
+ "| | nitrogen balance of soil-crop systems subject to climate |\n",
+ "| | conditions and a large array of management constraints. |\n",
+ "| | Overall the model is set up to be daily. Some processes such |\n",
+ "| | as water balance are temporally nested (subdaily)\\n.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/CYCLES |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['ClimComp is a Python routine for comparing the seasonal |\n",
+ "| | prediction with the average climatology'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/ClimComp |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Model to calculate various drought indices from |\n",
+ "| | precipitation/temperature data.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/DSI |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Decision Support System for Agrotechnology Transfer (DSSAT) |\n",
+ "| | is software application program that comprises dynamic crop |\n",
+ "| | growth simulation models for over 40 crops. DSSAT is supported |\n",
+ "| | by a range of utilities and applications for weather, soil, |\n",
+ "| | genetic, crop management and observational experimental data. |\n",
+ "| | Includes example data sets for all crop models. The crop |\n",
+ "| | simulation models simulate growth, development and yield as a |\n",
+ "| | function of the soil-plant-atmosphere dynamics |\n",
+ "| | (https://dssat.net/. 2019)'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/DSSAT |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Aggregate crop supply response model (EACS) describes an |\n",
+ "| | aggregate crop supply response model for a region (tested for |\n",
+ "| | South Sudan). This is a regional-scale aggregate model of |\n",
+ "| | agricultural supply for a specified set of crops (cassava, |\n",
+ "| | groundnuts, maize, sesame seed, and sorghum).'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/ECONOMIC_AGGREGATE_CROP_SUPPLY |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['This Python model calculates a flood severity index based on |\n",
+ "| | the annual maxima of volumetric flow for the period 1981-2017 |\n",
+ "| | obtained from the GloFAS data (http://www.globalfloods.eu/). |\n",
+ "| | The thresholds were estimated from a Gumbel distribution using |\n",
+ "| | the methods of L-moments. The severity is based on a 2-yr |\n",
+ "| | return period (medium), 5-yr return period (high), and 20-yr |\n",
+ "| | return period (severe).'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/FSI |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Height Above the Nearest Drainage (HAND) is a model that |\n",
+ "| | normalizes topography according to the local relative heights |\n",
+ "| | found along a given drainage network. Model output shows a |\n",
+ "| | high correlation with the depth of the water table in a region |\n",
+ "| | and provide an accurate spatial representation of soil water |\n",
+ "| | environments. HAND takes as input a Digital Elevation Map of a |\n",
+ "| | given region, producing as outputa normalized draining |\n",
+ "| | potential (or relative vertical flowpath-distance) to the |\n",
+ "| | nearest drainages.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/HAND |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Kimetrica model simulates land use'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/KIMETRICA_LAND_USE |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Modflow is a popular open-source groundwater flow model |\n",
+ "| | distributed by the U.S. Geological survey'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/MODFLOW |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Penn State Integrated Hydrologic Modeling System (PIHM) |\n",
+ "| | is a finite volume code used for simulating the distributed |\n",
+ "| | hydrologic states of a given watershed or river basin. PIHM |\n",
+ "| | accounts for many physical processes including: land surface |\n",
+ "| | processes (evaporation- transpiration, canopy interception, |\n",
+ "| | snowmelt) overland/channel flow coupled to groundwater flow. |\n",
+ "| | PIHM can include reservoirs and flow control structures. PIHM |\n",
+ "| | applies adaptive time stepping and uses the method of lines to |\n",
+ "| | solve the system of implicit equations.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/PIHM |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['The Soil & Water Assessment Tool (SWAT) is a small watershed |\n",
+ "| | to river basin-scale model used to simulate the quality and |\n",
+ "| | quantity of surface and ground water and predict the |\n",
+ "| | environmental impact of land use; land management practices |\n",
+ "| | and climate change (https://swat.tamu.edu/ 2019)'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/SWAT |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['Topoflow is a powerful spatially-distributed hydrologic |\n",
+ "| | model for various physical processes in a watershed, with the |\n",
+ "| | goal of accurately predicting how various hydrologic variables |\n",
+ "| | will evolve in time in response to climatic forcings.'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/TOPOFLOW |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| description | ['WGEN: A global weather generator for daily data derived from |\n",
+ "| | the Global Weather Generator (GWGEN)'] |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/WGEN |\n",
+ "+-------------+----------------------------------------------------------------+\n",
+ "\n",
+ "\n"
+ ]
+ }
+ ],
+ "source": [
+ "print_resources(models, filter={'id', 'description'})"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "## Select the **Model** `cycles` and list their **SoftwareVersions**"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "You can get a model by the name. For example, **cycles**"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 12,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "{'author': ['https://w3id.org/okn/i/mint/kemanian_armen'],\n",
+ " 'date_created': ['2016'],\n",
+ " 'description': ['Cycles simulates the productivity and the water,carbon and '\n",
+ " 'nitrogen balance of soil-crop systems subject to climate '\n",
+ " 'conditions and a large array of management constraints. '\n",
+ " 'Overall the model is set up to be daily. Some processes such '\n",
+ " 'as water balance are temporally nested (subdaily)\\n'\n",
+ " '.'],\n",
+ " 'has_assumption': ['The simulation unit in Cycles is a field with a single '\n",
+ " 'soil (soil file) that is layered (user defined number of '\n",
+ " 'layers) exposed to a daily weather (weather file) and '\n",
+ " 'subject to operations (operations file) that control soil '\n",
+ " 'properties; vegetation properties (crop file) and surface '\n",
+ " 'residue properties. Variables in weather file are '\n",
+ " 'considered rigid forcings. Surface conditions do not '\n",
+ " 'alter air temperature or moisture. Soil is connected to '\n",
+ " 'the residues; aboveground living biomass; air; and '\n",
+ " 'radiation from the atmosphere; and with the bottom of the '\n",
+ " 'profile. There is no lateral water or solutes movement '\n",
+ " 'within the soil profile. When running stand alone; runoff '\n",
+ " 'and percolation water simply leaves the simulation unit. '\n",
+ " 'Vegetation can be composed of monocultures (single '\n",
+ " 'species) or multiple species. The parameters describing '\n",
+ " 'each plant of the community are described in the crop '\n",
+ " 'file. The operations file allows multiple types of '\n",
+ " 'interventions organized as tillage; fertilization; and '\n",
+ " 'planting events. Operations like kill crop are part of '\n",
+ " 'tillage. To enable coupling with other models; Cycles can '\n",
+ " 'be set to replace (re-initialize) internally calculated '\n",
+ " 'variable with external inputs. For example; infiltration '\n",
+ " 'can be an input from the PIHM model; soil moisture can be '\n",
+ " 'reset based on observations or data from other models. '\n",
+ " 'This flexibility extends to all state variables. '\n",
+ " 'Re-initialization algorithm can break the mass balance '\n",
+ " 'and is not recommended unless the goal overrides mass or '\n",
+ " 'energy balance concerns. Overall the model is set up to '\n",
+ " 'be daily. Some processes such as water balance are '\n",
+ " 'temporally nested (subdaily)'],\n",
+ " 'has_contact_person': [{'id': 'https://w3id.org/okn/i/mint/kemanian_armen',\n",
+ " 'label': ['Armen Kemanian'],\n",
+ " 'type': 'sd:Person'}],\n",
+ " 'has_documentation': ['https://plantscience.psu.edu/research/labs/kemanian/models-and-tools/cycles'],\n",
+ " 'has_download_url': ['https://github.com/PSUmodeling/Cycles'],\n",
+ " 'has_example': ['#### Below is an illustrative example on how to use Cycles.\\n'\n",
+ " '---\\n'\n",
+ " 'General instructions: When using the Cycles AgroEcosystems '\n",
+ " 'Model in any region, you should follow the steps indicated '\n",
+ " 'below :\\n'\n",
+ " '\\n'\n",
+ " '1) Find your field location using a map. Cycles is a '\n",
+ " 'point-based model, and you will need information about the '\n",
+ " 'soil and weather for the point being simulated.\\n'\n",
+ " '\\n'\n",
+ " '2) [Expert users/modelers] Check the default control '\n",
+ " 'properties. These can be found in the Cycles control file. '\n",
+ " 'In the MINT configuration of Cycles, this file is not '\n",
+ " 'exposed, but can be found by downloading the component and '\n",
+ " 'looking at the technical details.\\n'\n",
+ " ' \\n'\n",
+ " '3) Check the soil values for the chosen location (by default '\n",
+ " 'Cyles uses '\n",
+ " '[GSSURGO](https://www.nrcs.usda.gov/wps/portal/nrcs/detail/soils/home/?cid=nrcs142p2_053628)) '\n",
+ " 'properties from your field location.\\n'\n",
+ " ' \\n'\n",
+ " '4) Select the weather location (by default Cycles tries to '\n",
+ " 'use the closest GLDAS grid) for your field location. A '\n",
+ " 'python script is used to read GLDAS netCDF4 files, aggregate '\n",
+ " 'subdaily GLDAS forcing data to daily resolution, and output '\n",
+ " 'the daily variables in text format to be used by Cycles.\\n'\n",
+ " ' \\n'\n",
+ " '5) **[Expert users/modelers]** Create operations for your '\n",
+ " 'field location using the Operation Panel and/or Timeline. In '\n",
+ " 'the MINT configuration of Cycles, this file is not exposed, '\n",
+ " 'but can be found by downloading the component and looking at '\n",
+ " 'the technical details.\\n'\n",
+ " '\\n'\n",
+ " '6) Inspect/visualize model results.\\n'\n",
+ " '\\n'\n",
+ " '\\n'\n",
+ " '**Scenario**: In our case we want to calculate the Seasonal '\n",
+ " 'Crop Production Index for the Pongo basin in South Sudan, '\n",
+ " 'because it provides a fast and robust way of reporting '\n",
+ " 'normalized yields for a given grid point or region. The goal '\n",
+ " 'of the index is to easily segment “years” or “seasons” that '\n",
+ " 'can be problematic for food production, and to provide an '\n",
+ " 'intuitive sense of the magnitude of the problem. The raw '\n",
+ " 'yield outputs might be difficult to interpret for '\n",
+ " 'non-experts, and index is more transparent.\\n'\n",
+ " '\\n'\n",
+ " 'The Seasonal Crop Production Index is based on the ratio of '\n",
+ " 'the yield of a given combination of planting date, '\n",
+ " 'fertilization and weed pressure to the median yield under '\n",
+ " 'such conditions across years:\\n'\n",
+ " ' \\n'\n",
+ " ' * An index = 1 means that the year resembles the median '\n",
+ " 'years, and it is assumed that it represents a neutral '\n",
+ " 'condition (neither local excess or shortage of food '\n",
+ " 'supply). \\n'\n",
+ " ' * An index > 1 means that the local food supply may exceed '\n",
+ " 'the median, and the larger the number the better off the '\n",
+ " 'location. The caveat here is that flooding damage might be '\n",
+ " 'underestimated. As we refine our simulations this limitation '\n",
+ " 'will be lifted.\\n'\n",
+ " ' * An index < 1 means a situation worse than normal, and the '\n",
+ " 'lower the value the worse the situation. It is safe to '\n",
+ " 'assume that this is a reliable indicator of local food '\n",
+ " 'shortage.\\n'\n",
+ " '\\n'\n",
+ " '**Data sources**:When attempting to follow the steps '\n",
+ " 'indicated above, the most difficult challenge is finding '\n",
+ " 'weather and soil files for our target region, as they are '\n",
+ " 'not available in GSSURGO or NLDAS. Therefore we selected the '\n",
+ " 'soils information from '\n",
+ " '[USDA](https://www.nrcs.usda.gov/wps/portal/nrcs/detail/soils/survey/tools/?cid=nrcseprd1407030), '\n",
+ " 'and [Global Land Data Assimilation System '\n",
+ " '(GLDAS)](https://ldas.gsfc.nasa.gov/gldas) for the weather '\n",
+ " 'data. GLDAS has coarser temporal resolution than NLDAS, but '\n",
+ " 'has global coverage which is critical in our use case.\\n'\n",
+ " '\\n'\n",
+ " '**Results**: We executed Cycles in 209 locations we selected '\n",
+ " 'in the Pongo region, selecting \"Maize\" as our target crop '\n",
+ " 'and with multiple fertilization rates and weed fraction. '\n",
+ " 'Figure 1 shows the Variation of the Seasonal Crop Production '\n",
+ " 'Index for maize for one agricultural grid point in the Pongo '\n",
+ " 'Basin, after consolidating the results of each of the '\n",
+ " 'executions. The nitrogen rates represent from low to high '\n",
+ " 'fertilization (for the agronomy minded, 78 to 1250 kg/ha of '\n",
+ " 'raw fertilizer with 32% nitrogen). The 0.4 in the legend '\n",
+ " 'indicates the weed pressure (medium). The planting dates are '\n",
+ " 'not shown here, but an analyst can easily explore their '\n",
+ " 'impact by expanding the data selection. Clearly, years 2011, '\n",
+ " '2016 and 2017 in particular were problematic. \\n'\n",
+ " '\\n'\n",
+ " '\\n'\n",
+ " '\\n'\n",
+ " '**Figure 1: Variation of the Seasonal Crop Production Index '\n",
+ " 'for maize for one agricultural grid point in the Pongo '\n",
+ " 'Basin.**\\n'\n",
+ " '\\n'\n",
+ " '---\\n'\n",
+ " 'For more information on using Cycles, please see '\n",
+ " 'https://www.cycles-model.psu.edu/Cycles/CyclesModel.html.'],\n",
+ " 'has_explanation_diagram': [{'id': 'https://w3id.org/okn/i/mint/cycles_forrester',\n",
+ " 'label': ['Forrester diagram for Cycles'],\n",
+ " 'type': 'Image'}],\n",
+ " 'has_funding': ['https://w3id.org/okn/i/mint/CYCLES_funding'],\n",
+ " 'has_grid': [{'id': 'https://w3id.org/okn/i/mint/cycles_grid',\n",
+ " 'label': ['Grid from the Cycles agriculture model'],\n",
+ " 'type': ['Grid', 'PointBasedGrid']}],\n",
+ " 'has_installation_instructions': ['http://psumodeling.github.io/Cycles/'],\n",
+ " 'has_model_category': ['Agriculture'],\n",
+ " 'has_purpose': ['crop seasonal production'],\n",
+ " 'has_version': [{'id': 'https://w3id.org/okn/i/mint/cycles_v0.9.3_alpha',\n",
+ " 'label': ['Cycles v0.9.3 alpha'],\n",
+ " 'type': ['SoftwareVersion', 'Theory-GuidedModel']},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/cycles_v0.10.2_alpha',\n",
+ " 'label': ['Cycles v0.10.2-alpha'],\n",
+ " 'type': ['SoftwareVersion', 'Theory-GuidedModel']},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/cycles_v0.9.4_alpha',\n",
+ " 'label': ['Cycles v0.94-alpha'],\n",
+ " 'type': ['SoftwareVersion', 'Theory-GuidedModel']}],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/CYCLES',\n",
+ " 'keywords': ['Agriculture; crop yield; crop failure; weather; fertilizer; '\n",
+ " 'crop management'],\n",
+ " 'label': ['Cycles'],\n",
+ " 'logo': [{'id': 'https://w3id.org/okn/i/mint/cycles_logo',\n",
+ " 'label': ['Cycles logo'],\n",
+ " 'type': 'Image'}],\n",
+ " 'operating_systems': ['Windows;Unix'],\n",
+ " 'publisher': [{'id': 'https://w3id.org/okn/i/mint/penn_state_university',\n",
+ " 'label': ['The Pennsylvania State University'],\n",
+ " 'type': 'sd:Organization'}],\n",
+ " 'type': ['Model', 'Theory-GuidedModel'],\n",
+ " 'useful_for_calculating_index': [{'id': 'http://www.geoscienceontology.org/svo/svl/variable#crop_production__seasonal_production_index',\n",
+ " 'label': ['crop__seasonal_production_index'],\n",
+ " 'type': ['http://www.geoscienceontology.org/svo/svu#Variable',\n",
+ " 'http://www.w3.org/2002/07/owl#NamedIndividual']}],\n",
+ " 'website': ['https://plantscience.psu.edu/research/labs/kemanian/models-and-tools/cycles']}\n"
+ ]
+ }
+ ],
+ "source": [
+ "model_id = \"CYCLES\"\n",
+ "try:\n",
+ " # Get a Model\n",
+ " model = api_instance.models_id_get(model_id, username=username)\n",
+ " pprint(model)\n",
+ "except ApiException as e:\n",
+ " print(\"Exception when calling ModelApi->models_id_get: %s\\n\" % e)"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 13,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "+--------------------+---------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+====================+=========================================================+\n",
+ "| has_version | [{'id': |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_v0.9.3_alpha', |\n",
+ "| | 'label': ['Cycles v0.9.3 alpha'], 'type': |\n",
+ "| | ['SoftwareVersion', 'Theory-GuidedModel']}, {'id': |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_v0.10.2_alpha', |\n",
+ "| | 'label': ['Cycles v0.10.2-alpha'], 'type': |\n",
+ "| | ['SoftwareVersion', 'Theory-GuidedModel']}, {'id': |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_v0.9.4_alpha', |\n",
+ "| | 'label': ['Cycles v0.94-alpha'], 'type': |\n",
+ "| | ['SoftwareVersion', 'Theory-GuidedModel']}] |\n",
+ "+--------------------+---------------------------------------------------------+\n",
+ "| description | ['Cycles simulates the productivity and the |\n",
+ "| | water,carbon and nitrogen balance of soil-crop systems |\n",
+ "| | subject to climate conditions and a large array of |\n",
+ "| | management constraints. Overall the model is set up to |\n",
+ "| | be daily. Some processes such as water balance are |\n",
+ "| | temporally nested (subdaily)\\n.'] |\n",
+ "+--------------------+---------------------------------------------------------+\n",
+ "| has_contact_person | [{'id': 'https://w3id.org/okn/i/mint/kemanian_armen', |\n",
+ "| | 'label': ['Armen Kemanian'], 'type': 'sd:Person'}] |\n",
+ "+--------------------+---------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/CYCLES |\n",
+ "+--------------------+---------------------------------------------------------+\n"
+ ]
+ }
+ ],
+ "source": [
+ "print_resource(model, filter={'id', 'description', 'has_contact_person', 'has_version'})"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 14,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "'https://w3id.org/okn/i/mint/cycles_v0.9.3_alpha'\n",
+ "'https://w3id.org/okn/i/mint/cycles_v0.10.2_alpha'\n",
+ "'https://w3id.org/okn/i/mint/cycles_v0.9.4_alpha'\n"
+ ]
+ }
+ ],
+ "source": [
+ "for version in model.has_version:\n",
+ " pprint(version['id'])"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "## Software Version\n",
+ "\n",
+ "We are going to select the **SoftwareVersion**: ``cycles_v0.9.4_alpha``"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 15,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "{'author': [{'id': 'https://w3id.org/okn/i/mint/kemanian_armen',\n",
+ " 'label': ['Armen Kemanian'],\n",
+ " 'type': 'sd:Person'},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/shi_yuning',\n",
+ " 'label': ['Yuning Shi'],\n",
+ " 'type': 'sd:Person'}],\n",
+ " 'description': ['Version 0.9.4 of Cycles allowing exposing multiple '\n",
+ " 'parameters'],\n",
+ " 'has_configuration': [{'id': 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha',\n",
+ " 'label': ['Cycles configuration (v0.9.4) exposing weed '\n",
+ " 'fraction and fertilizer rate'],\n",
+ " 'type': ['ModelConfiguration',\n",
+ " 'Theory-GuidedModel',\n",
+ " 'SoftwareConfiguration']}],\n",
+ " 'has_funding': [{'id': None}],\n",
+ " 'has_version_id': ['0.9.4-alpha'],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/cycles_v0.9.4_alpha',\n",
+ " 'keywords': ['agriculture; cycles; crop growth; weather;soil;crop management'],\n",
+ " 'label': ['Cycles v0.94-alpha'],\n",
+ " 'type': ['Theory-GuidedModel', 'SoftwareVersion']}\n"
+ ]
+ }
+ ],
+ "source": [
+ "api_instance = modelcatalog.SoftwareVersionApi()\n",
+ "software_version_id = 'cycles_v0.9.4_alpha' # str | The ID of the resource\n",
+ "\n",
+ "try:\n",
+ " # Get a SoftwareImage\n",
+ " software_version = api_instance.softwareversions_id_get(software_version_id, username=username)\n",
+ " pprint(software_version)\n",
+ "except ApiException as e:\n",
+ " print(\"Exception when calling SoftwareImageApi->softwareimages_id_get: %s\\n\" % e)"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 16,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "+-------------------+----------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+===================+==========================================================+\n",
+ "| description | ['Version 0.9.4 of Cycles allowing exposing multiple |\n",
+ "| | parameters'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles_v0.9.4_alpha |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| has_configuration | [{'type': ['ModelConfiguration', 'Theory-GuidedModel', |\n",
+ "| | 'SoftwareConfiguration'], 'id': |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha', |\n",
+ "| | 'label': ['Cycles configuration (v0.9.4) exposing weed |\n",
+ "| | fraction and fertilizer rate']}] |\n",
+ "+-------------------+----------------------------------------------------------+\n"
+ ]
+ }
+ ],
+ "source": [
+ "print_resource(software_version, filter={'id', 'description', 'has_configuration'})"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "The **SoftwareVersion** has one **ModelConfiguration**: https://w3id.org/okn/i/mint/cycles-0.9.4-alpha"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "## Model Configuration\n",
+ "\n"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "### Get model configuration\n",
+ "\n",
+ "You can get a model configuration by the name. For example, **cycles-0.9.4-alpha**"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 17,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "{'author': ['https://w3id.org/okn/i/mint/silva_rafael'],\n",
+ " 'description': ['Cycles configuration (version 0.9.4) exposing additional '\n",
+ " 'parameters such as weeds fraction and fertilizer rate'],\n",
+ " 'has_causal_diagram': [{'has_part': ['https://w3id.org/okn/i/mint/cycles_hx',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_pp',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_sr',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_transpiration',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_cropGrowth',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_ws',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_tn',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_tx',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_grain_yield',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_hn',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_swc'],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/cycles_cfg_simple_CAG',\n",
+ " 'label': ['CAG for Cycles with the most important '\n",
+ " 'variables in the model'],\n",
+ " 'type': ['CausalDiagram']},\n",
+ " {'has_part': ['https://w3id.org/okn/i/mint/cycles_bd',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_hx',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_som',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_pp',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_dz',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_rv',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_percolation',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_smc',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_clay',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_net_mineraliz',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_sr',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_cropGrowth',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_soil_evap',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_n_stress',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_cn',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_ws',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_tn',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_tx',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_grain_yield',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_hn',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_soil_evapr',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_swc',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_infiltration',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_layer',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_silt',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_slope',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_mineralization',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_transpiration'],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/cycles_cfg_complex_CAG',\n",
+ " 'label': ['CAG for Cycles representing a more complex '\n",
+ " 'version of the variables and processes of '\n",
+ " 'the model'],\n",
+ " 'type': ['CausalDiagram']}],\n",
+ " 'has_component_location': ['https://github.com/mintproject/MINT-WorkflowDomain/blob/18cf8de2b117fad2a4ede6eb1a439b76ff241486/WINGSWorkflowComponents/cycles-0.9.4-alpha/cycles-0.9.4-alpha.zip?raw=true'],\n",
+ " 'has_grid': [{'description': ['Grid from the Cycles agriculture model'],\n",
+ " 'has_dimension': ['0D'],\n",
+ " 'has_shape': ['Point'],\n",
+ " 'has_spatial_resolution': ['Point'],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/cycles_grid',\n",
+ " 'label': ['Grid from the Cycles agriculture model'],\n",
+ " 'type': ['Grid', 'PointBasedGrid']}],\n",
+ " 'has_implementation_script_location': ['https://github.com/mintproject/MINT-WorkflowDomain/raw/master/WINGSWorkflowComponents/cycles-0.9.4-alpha/src/run'],\n",
+ " 'has_input': [{'description': ['Cycles soil description file. Soil files '\n",
+ " 'typically have a suffix of .soil, but any '\n",
+ " 'naming convention can be used as long as it '\n",
+ " 'matches the soil file name listed in the '\n",
+ " 'control file. The soil file starts with three '\n",
+ " 'lines at the beginning with the keyword tags '\n",
+ " 'CURVE_NUMBER, SLOPE, and TOTAL_LAYERS, with '\n",
+ " 'each keyword followed by a tab-delimited '\n",
+ " 'value.'],\n",
+ " 'hasDimensionality': ['0'],\n",
+ " 'hasFormat': ['soil'],\n",
+ " 'hasPresentation': ['https://w3id.org/okn/i/mint/cycles_bd',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_som',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_dz',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_rv',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_smc',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_clay',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_cn',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_layer',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_silt',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_slope'],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_soil',\n",
+ " 'label': ['cycles_soil'],\n",
+ " 'position': ['2'],\n",
+ " 'type': ['https://w3id.org/wings/export/MINT#CyclesSoil',\n",
+ " 'DatasetSpecification']},\n",
+ " {'description': ['The crop description file defines '\n",
+ " 'physiological and management parameters that '\n",
+ " 'control the growth and harvest of crops used '\n",
+ " 'in the simulation. Each crop used in the '\n",
+ " 'simulation must have an entry in the crop '\n",
+ " 'description file. Each crop entry begins with '\n",
+ " 'the keyword tag NAME.'],\n",
+ " 'hasDimensionality': ['0'],\n",
+ " 'hasFormat': ['crop'],\n",
+ " 'hasPresentation': ['https://w3id.org/okn/i/mint/cycles_standing_residue_at_harvest',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_name',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_lwp_stress_onset',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_crop_harvest_index',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_harvest_timing',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_clipping_biomass_threshold_lower',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_thermal_time_to_emergence',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_annual',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_min_temperature_for_cold_damage',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_threshold_temperature_for_transpiration',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_maximum_rooting_depth',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_maturity_tt',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_base_temperature_for_development',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_legume',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_transpiration_use_efficiency',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_kc',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_final_partitioning_to_shoot',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_c3',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_max_temperature_for_development',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_n_dilution_slope',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_residue_removed',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_initial_partitioning_to_shoot',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_threshold_temperature_for_cold_damage',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_maximum_harvest_index',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_optimum_temperature_for_development',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_min_temperature_for_transpiration',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_clipping_biomass_threshold_upper',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_radiation_use_efficiency',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_n_max_concentration',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_harvest_biomass_destiny',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_minimum_harvest_index',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_lwp_wilting_point',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_flowering_tt',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_transpiration_max',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_maximum_soil_coverage'],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_crops',\n",
+ " 'label': ['cycles_crops'],\n",
+ " 'position': ['3'],\n",
+ " 'type': ['DatasetSpecification',\n",
+ " 'https://w3id.org/wings/export/MINT#CyclesCrops']},\n",
+ " {'description': ['Cycles weather description file. The weather '\n",
+ " 'files typically have a suffix of .weather, '\n",
+ " 'but any suffix or file naming convention can '\n",
+ " 'be used so long as the name of the weather '\n",
+ " 'file listed in the control file exactly '\n",
+ " 'matches the name of the weather file to be '\n",
+ " 'used in the input directory. Weather files '\n",
+ " 'contain three lines at the beginning with the '\n",
+ " 'keyword tags LATITUDE, ALTITUDE, and '\n",
+ " 'SCREENING_HEIGHT, each followed by a '\n",
+ " 'tab-delimited value. Altitude and screening '\n",
+ " 'height values should be entered in meters. '\n",
+ " 'Screening height is the height of the weather '\n",
+ " 'station instruments above the land surface. '\n",
+ " 'Following these three lines is a row of '\n",
+ " 'tab-delimited column headers in the order '\n",
+ " 'YEAR, DOY, PP, TX, TN, SOLAR, RHX, RHN, WIND'],\n",
+ " 'hasDimensionality': ['0'],\n",
+ " 'hasFormat': ['weather'],\n",
+ " 'hasPresentation': ['https://w3id.org/okn/i/mint/cycles_hx',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_pp',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_sr',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_ws',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_tn',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_tx',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_hn'],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_weather',\n",
+ " 'label': ['cycles_weather'],\n",
+ " 'position': ['1'],\n",
+ " 'type': ['https://w3id.org/wings/export/MINT#CyclesWeather',\n",
+ " 'DatasetSpecification']}],\n",
+ " 'has_model_category': ['Agriculture'],\n",
+ " 'has_output': [{'description': ['Results in this file are for the sum of all '\n",
+ " 'layers in the soil profile, including '\n",
+ " 'surface residues'],\n",
+ " 'hasDimensionality': ['0'],\n",
+ " 'hasFormat': ['dat'],\n",
+ " 'hasPresentation': ['https://w3id.org/okn/i/mint/cycles_res_c_decomp',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_humified_c2',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_final_c',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_res_biomass_in',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_c_diff',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_respired_c',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_init_c_mass',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_root_c_decomp',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_root_biomass_in',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_year'],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_soilProfile',\n",
+ " 'label': ['cycles_soilProfile'],\n",
+ " 'position': ['1'],\n",
+ " 'type': ['DatasetSpecification',\n",
+ " 'https://w3id.org/wings/export/MINT#CyclesAnnualSoilProfile']},\n",
+ " {'description': ['Cycles crop output file'],\n",
+ " 'hasDimensionality': ['0'],\n",
+ " 'hasFormat': ['dat'],\n",
+ " 'hasPresentation': ['https://w3id.org/okn/i/mint/cycles_n_fixation',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_ag_biomass',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_thermal_time',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_stage',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_n_added',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_frac_intercep',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_ag_n_concn',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_cum._biomass',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_water_stress',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_ag_n',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_date',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_root_biomass',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_crop_v',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_total_n',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_root_n',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_potential_tr',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_n_stress'],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_crop',\n",
+ " 'label': ['cycles_crop'],\n",
+ " 'position': ['3'],\n",
+ " 'type': ['https://w3id.org/wings/export/MINT#CyclesCropOutput',\n",
+ " 'DatasetSpecification']},\n",
+ " {'description': ['Cycles water file'],\n",
+ " 'hasDimensionality': ['0'],\n",
+ " 'hasFormat': ['dat'],\n",
+ " 'hasPresentation': ['https://w3id.org/okn/i/mint/cycles_plant_evap',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_runoff',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_irrigation',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_res_evap',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_snow_sub',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_drainage',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_date',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_transpiration',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_soil_evap',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_swc',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_infiltration'],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_water',\n",
+ " 'label': ['cycles_water'],\n",
+ " 'position': ['8'],\n",
+ " 'type': ['DatasetSpecification',\n",
+ " 'https://w3id.org/wings/export/MINT#CyclesWaterOutput']},\n",
+ " {'description': ['The summary file provides a summarized '\n",
+ " 'output of total C inputs over the duration '\n",
+ " 'of the simulation and average annual rates '\n",
+ " 'for N cycling processes.'],\n",
+ " 'hasDimensionality': ['0'],\n",
+ " 'hasFormat': ['dat'],\n",
+ " 'hasPresentation': ['https://w3id.org/okn/i/mint/cycles_res_c_input',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_init_prof_c',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_avg_no3_leach',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_avg_n_immob',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_root_c_input',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_avg_nh3_volatil',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_soil_c_chg/yr',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_avg_nh4_leach',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_retained_res',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_avg_tot_n2o_emi',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_avg_no3_denit',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_final_prof_c',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_avg_net_n_min',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_resp_soil_c',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_produced_root',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_avg_gross_n_min',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_avg_n2o_fr_nit',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_humified_c',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_prof_c_diff',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_resp_res_c',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_avg_n2o_fr_deni',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_avg_nh4_nitrif'],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_summary',\n",
+ " 'label': ['cycles_summary'],\n",
+ " 'position': ['6'],\n",
+ " 'type': ['DatasetSpecification',\n",
+ " 'https://w3id.org/wings/export/MINT#CyclesSummary']},\n",
+ " {'description': ['The season.dat file provides information '\n",
+ " 'about each crop harvest.'],\n",
+ " 'hasDimensionality': ['0'],\n",
+ " 'hasFormat': ['dat'],\n",
+ " 'hasPresentation': ['https://w3id.org/okn/i/mint/cycles_root_biomass',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_actual_tr',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_n_in_harvest',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_cum._n_stress',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_crop_v',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_forage_yield',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_total_n',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_n_in_residue',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_grain_n',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_n_concn_forage',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_root_n',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_potential_tr',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_total_biomass',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_harvest_index',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_ag_residue',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_forage_n',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_date',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_grain_yield',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_soil_evapr'],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_season',\n",
+ " 'label': ['cycles_season'],\n",
+ " 'position': ['5'],\n",
+ " 'type': ['https://w3id.org/wings/export/MINT#CyclesSeason',\n",
+ " 'DatasetSpecification']},\n",
+ " {'description': ['Cycles season configuration file'],\n",
+ " 'hasDimensionality': ['0'],\n",
+ " 'hasFormat': ['txt'],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_outputs',\n",
+ " 'label': ['cycles_outputs'],\n",
+ " 'position': ['9'],\n",
+ " 'type': ['https://w3id.org/wings/export/MINT#CyclesOutputs',\n",
+ " 'DatasetSpecification']},\n",
+ " {'description': ['Nitrogen file. Results in this file are for '\n",
+ " 'the sum of all layers in the soil profile, '\n",
+ " 'including surface residues.'],\n",
+ " 'hasDimensionality': ['0'],\n",
+ " 'hasFormat': ['dat'],\n",
+ " 'hasPresentation': ['https://w3id.org/okn/i/mint/cycles_n2o_from_nitrif',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_n2o_from_denit',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_org_soil_n',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_prof_soil_no3',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_prof_soil_nh4',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_nh4_leaching',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_nh4_nitrificat',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_no3_leaching',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_no3_denitrif',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_immobilization',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_nh4_volatiliz',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_date',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_net_mineraliz',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_mineralization'],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_nitrogen',\n",
+ " 'label': ['cycles_nitrogen'],\n",
+ " 'position': ['4'],\n",
+ " 'type': ['DatasetSpecification',\n",
+ " 'https://w3id.org/wings/export/MINT#CyclesNitrogen']},\n",
+ " {'description': ['Cycles annual SOM file. This file provides '\n",
+ " 'annualized measurements of the carbon '\n",
+ " 'concentration and saturation ratio by soil '\n",
+ " 'layer. One column will be created for each '\n",
+ " 'layer in the soil profile for the variables '\n",
+ " 'where the column heading indicates LAYER '\n",
+ " '1..x'],\n",
+ " 'hasDimensionality': ['0'],\n",
+ " 'hasFormat': ['dat'],\n",
+ " 'hasPresentation': ['https://w3id.org/okn/i/mint/cycles_c_sat._ratio',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_thickness',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_bulk_density',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_year',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_soil_c'],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_somF',\n",
+ " 'label': ['cycles_som'],\n",
+ " 'position': ['2'],\n",
+ " 'type': ['DatasetSpecification',\n",
+ " 'https://w3id.org/wings/export/MINT#CyclesAnnualSOM']},\n",
+ " {'description': ['Cycles weather output file'],\n",
+ " 'hasDimensionality': ['0'],\n",
+ " 'hasFormat': ['dat'],\n",
+ " 'hasPresentation': ['https://w3id.org/okn/i/mint/cycles_min_tmp',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_date',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_max_tmp',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_precipitation',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_avg_tmp',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_reference_et'],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_weatherOutput',\n",
+ " 'label': ['cycles_weatherOutput'],\n",
+ " 'position': ['7'],\n",
+ " 'type': ['DatasetSpecification',\n",
+ " 'https://w3id.org/wings/export/MINT#CyclesWeatherOutput']}],\n",
+ " 'has_output_time_interval': [{'description': ['Time interval used in the '\n",
+ " 'Cycles simple configuration'],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/cycles_cfg_simple_TI',\n",
+ " 'interval_unit': ['https://w3id.org/okn/i/mint/dayT'],\n",
+ " 'interval_value': ['1'],\n",
+ " 'label': ['Simple cycles time interval'],\n",
+ " 'type': ['TimeInterval']}],\n",
+ " 'has_parameter': [{'adjustsVariable': ['https://w3id.org/okn/i/mint/cycles_fraction'],\n",
+ " 'description': ['Areal fraction of weed: 0.05 is low, 0.25 '\n",
+ " 'is moderate, 1 is high, and 2 is the '\n",
+ " 'maximum (after 2 there will be no '\n",
+ " 'response from the model)'],\n",
+ " 'hasDataType': ['float'],\n",
+ " 'hasDefaultValue': ['0.05'],\n",
+ " 'hasMaximumAcceptedValue': ['2'],\n",
+ " 'hasMinimumAcceptedValue': ['0'],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_weed_fraction',\n",
+ " 'label': ['weed_fraction'],\n",
+ " 'position': ['7'],\n",
+ " 'relevantForIntervention': ['https://w3id.org/okn/i/mint/weedControl'],\n",
+ " 'type': ['https://w3id.org/wings/export/MINT#CyclesWeedFraction',\n",
+ " 'Parameter'],\n",
+ " 'usesUnit': ['https://w3id.org/okn/i/mint/%25']},\n",
+ " {'adjustsVariable': ['https://w3id.org/okn/i/mint/cycles_crop_name'],\n",
+ " 'description': ['Name of the crop to run the simulation '\n",
+ " 'for. Accepted values vary according to '\n",
+ " 'the crop file provided. By default, these '\n",
+ " 'are: '\n",
+ " 'Maize,Sorghum,Peanut,Sesame,Teff,SpringWheat,SpringBarley'],\n",
+ " 'hasDataType': ['string'],\n",
+ " 'hasDefaultValue': ['Maize'],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_crop_name',\n",
+ " 'label': ['crop_name'],\n",
+ " 'position': ['3'],\n",
+ " 'type': ['https://w3id.org/wings/export/MINT#CyclesCropName',\n",
+ " 'Parameter']},\n",
+ " {'adjustsVariable': ['https://w3id.org/okn/i/mint/cycles_end_year'],\n",
+ " 'description': ['Year when the simulation ends'],\n",
+ " 'hasDataType': ['int'],\n",
+ " 'hasDefaultValue': ['2017'],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_end_year',\n",
+ " 'label': ['end_year'],\n",
+ " 'position': ['2'],\n",
+ " 'type': ['https://w3id.org/wings/export/MINT#CyclesEndYear',\n",
+ " 'Parameter'],\n",
+ " 'usesUnit': ['https://w3id.org/okn/i/mint/yearT']},\n",
+ " {'adjustsVariable': ['https://w3id.org/okn/i/mint/cycles_mass'],\n",
+ " 'description': ['Mass of nitrogen fertilizer added each '\n",
+ " 'year (kg/ha). The model will multiply the '\n",
+ " 'mass by the concentration of the '\n",
+ " 'fertilizer (0.32). Teff crops should not '\n",
+ " 'surpass 320kg/ha'],\n",
+ " 'hasDataType': ['float'],\n",
+ " 'hasDefaultValue': ['0'],\n",
+ " 'hasMaximumAcceptedValue': ['1250'],\n",
+ " 'hasMinimumAcceptedValue': ['0'],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_fertilizer_rate',\n",
+ " 'label': ['fertilizer_rate'],\n",
+ " 'position': ['6'],\n",
+ " 'type': ['Parameter',\n",
+ " 'https://w3id.org/wings/export/MINT#CyclesFertilizerRate'],\n",
+ " 'usesUnit': ['https://w3id.org/okn/i/mint/kg_ha_1M_L_2']},\n",
+ " {'adjustsVariable': ['https://w3id.org/okn/i/mint/cycles_start_year'],\n",
+ " 'description': ['Year when the simulation starts'],\n",
+ " 'hasDataType': ['int'],\n",
+ " 'hasDefaultValue': ['2000'],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_start_year',\n",
+ " 'label': ['start_year'],\n",
+ " 'position': ['1'],\n",
+ " 'type': ['https://w3id.org/wings/export/MINT#CyclesStartYear',\n",
+ " 'Parameter'],\n",
+ " 'usesUnit': ['https://w3id.org/okn/i/mint/yearT']},\n",
+ " {'adjustsVariable': ['https://w3id.org/okn/i/mint/cycles_end_doy'],\n",
+ " 'description': ['Day of the year for the end of the '\n",
+ " 'planting window'],\n",
+ " 'hasDataType': ['int'],\n",
+ " 'hasDefaultValue': ['149'],\n",
+ " 'hasMaximumAcceptedValue': ['365'],\n",
+ " 'hasMinimumAcceptedValue': ['1'],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_end_planting_day',\n",
+ " 'label': ['end_planting_day'],\n",
+ " 'position': ['5'],\n",
+ " 'relevantForIntervention': ['https://w3id.org/okn/i/mint/plantingWindows'],\n",
+ " 'type': ['Parameter',\n",
+ " 'https://w3id.org/wings/export/MINT#CyclesEndPlantingDay'],\n",
+ " 'usesUnit': ['https://w3id.org/okn/i/mint/dayT']},\n",
+ " {'adjustsVariable': ['https://w3id.org/okn/i/mint/cycles_doy'],\n",
+ " 'description': ['Day of the year for the start of the '\n",
+ " 'planting window'],\n",
+ " 'hasDataType': ['int'],\n",
+ " 'hasDefaultValue': ['100'],\n",
+ " 'hasMaximumAcceptedValue': ['365'],\n",
+ " 'hasMinimumAcceptedValue': ['1'],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_start_planting_day',\n",
+ " 'label': ['start_planting_day'],\n",
+ " 'position': ['4'],\n",
+ " 'relevantForIntervention': ['https://w3id.org/okn/i/mint/plantingWindows'],\n",
+ " 'type': ['https://w3id.org/wings/export/MINT#CyclesStartPlantingDay',\n",
+ " 'Parameter'],\n",
+ " 'usesUnit': ['https://w3id.org/okn/i/mint/dayT']},\n",
+ " {'description': ['Use forcing data from a hydrology model '\n",
+ " '(when available)'],\n",
+ " 'hasDataType': ['boolean'],\n",
+ " 'hasDefaultValue': ['FALSE'],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_use_forcing',\n",
+ " 'label': ['use_forcing'],\n",
+ " 'position': ['8'],\n",
+ " 'type': ['https://w3id.org/wings/export/MINT#CyclesUseForcing',\n",
+ " 'Parameter']}],\n",
+ " 'has_process': [{'id': 'https://w3id.org/okn/i/mint/cycles_precipitation_process',\n",
+ " 'influences': [{'id': None}],\n",
+ " 'label': ['Precipitation'],\n",
+ " 'type': ['Process']},\n",
+ " {'id': None},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/cycles_solarradiation_process',\n",
+ " 'influences': [{'id': None}, {'id': None}],\n",
+ " 'label': ['Solar radiation'],\n",
+ " 'type': ['Process']},\n",
+ " {'id': None},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/cycles_management_process',\n",
+ " 'influences': [{'id': None}],\n",
+ " 'label': ['Management'],\n",
+ " 'type': ['Process']},\n",
+ " {'id': None},\n",
+ " {'id': None},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/cycles_biomassgrowth_process',\n",
+ " 'influences': [{'id': 'https://w3id.org/okn/i/mint/cycles_transpiration_process',\n",
+ " 'influences': [{'id': 'https://w3id.org/okn/i/mint/cycles_Nuptake_process',\n",
+ " 'influences': [{'id': None}],\n",
+ " 'label': ['Nitrogen uptake'],\n",
+ " 'type': ['Process']},\n",
+ " {'id': None}],\n",
+ " 'label': ['Transpiration'],\n",
+ " 'type': ['Process']},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/cycles_humification_process',\n",
+ " 'influences': [{'id': None}],\n",
+ " 'label': ['Humification'],\n",
+ " 'type': ['Process']},\n",
+ " {'id': None}],\n",
+ " 'label': ['Biomass growth'],\n",
+ " 'type': ['Process']},\n",
+ " {'id': None},\n",
+ " {'id': 'https://w3id.org/okn/i/mint/cycles_respiration_process',\n",
+ " 'influences': [{'id': 'https://w3id.org/okn/i/mint/cycles_Nmineralizationandimmobalization_process',\n",
+ " 'influences': [{'id': 'https://w3id.org/okn/i/mint/cycles_Ntransport_process',\n",
+ " 'label': ['Nitrogen '\n",
+ " 'transport'],\n",
+ " 'type': ['Process']}],\n",
+ " 'label': ['Nitrogen mineralization and '\n",
+ " 'immobalization'],\n",
+ " 'type': ['Process']}],\n",
+ " 'label': ['Respiration'],\n",
+ " 'type': ['Process']}],\n",
+ " 'has_setup': [{'adjustableParameter': ['https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia_crop_name',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia_end_year',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia_start_planting_day',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia_weed_fraction',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia_fertilizer_rate',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia_end_planting_day',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia_start_year'],\n",
+ " 'author': ['https://w3id.org/okn/i/mint/silva_rafael'],\n",
+ " 'description': ['Cycles model (v0.9.4) set up for the Gambella '\n",
+ " 'region (Ethiopia) in a single point (i.e., '\n",
+ " 'single weather file). Parameters are '\n",
+ " 'adjustable but files are not'],\n",
+ " 'hasCausalDiagram': ['https://w3id.org/okn/i/mint/cycles_cfg_simple_CAG',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_cfg_complex_CAG'],\n",
+ " 'hasComponentLocation': ['https://github.com/mintproject/MINT-WorkflowDomain/blob/18cf8de2b117fad2a4ede6eb1a439b76ff241486/WINGSWorkflowComponents/cycles-0.9.4-alpha/cycles-0.9.4-alpha.zip?raw=true'],\n",
+ " 'hasGrid': ['https://w3id.org/okn/i/mint/cycles_grid'],\n",
+ " 'hasImplementationScriptLocation': ['https://github.com/mintproject/MINT-WorkflowDomain/raw/master/WINGSWorkflowComponents/cycles-0.9.4-alpha/src/run'],\n",
+ " 'hasInput': ['https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia_crops',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia_soil',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia_weather'],\n",
+ " 'hasModelCategory': ['Agriculture'],\n",
+ " 'hasOutput': ['https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia_nitrogen',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia_season',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia_water',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia_weatherOutput',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia_soilProfile',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia_somF',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia_outputs',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia_summary',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia_crop'],\n",
+ " 'hasOutputTimeInterval': ['https://w3id.org/okn/i/mint/cycles_cfg_simple_TI'],\n",
+ " 'hasParameter': ['https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia_crop_name',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia_end_year',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia_start_planting_day',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia_weed_fraction',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia_fertilizer_rate',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia_end_planting_day',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia_start_year',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia_use_forcing'],\n",
+ " 'hasProcess': ['https://w3id.org/okn/i/mint/cycles_transpiration_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_Ntransport_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_respiration_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_Nmineralizationandimmobalization_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_precipitation_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_solarradiation_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_Nuptake_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_biomassgrowth_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_humification_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_management_process'],\n",
+ " 'hasRegion': ['https://w3id.org/okn/i/mint/Gambella'],\n",
+ " 'hasSoftwareImage': ['https://w3id.org/okn/i/mint/MINTPROJECT-CYCLES:0.9.4-ALPHA'],\n",
+ " 'hasSourceCode': ['https://w3id.org/okn/i/mint/source_cycles-0.9.4-alpha'],\n",
+ " 'hasUsageNotes': ['The crop file is location dependant. The '\n",
+ " 'weather file must be compatible with the '\n",
+ " 'year selected for simulation. Otherwise the '\n",
+ " 'model will not work. For example, if the '\n",
+ " 'weather file is for 2018, the model will '\n",
+ " 'output an error when attempting to simulate '\n",
+ " '2000..2017'],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia',\n",
+ " 'keywords': ['agriculture; cycles; crop growth; '\n",
+ " 'weather;soil;crop management'],\n",
+ " 'label': ['Cycles model (v0.9.4) set up for the Gambella '\n",
+ " 'region (Ethiopia) with adjustable parameters'],\n",
+ " 'parameterAssignmentMethod': ['Expert-configured'],\n",
+ " 'type': ['ConfigurationSetup',\n",
+ " 'ModelConfigurationSetup',\n",
+ " 'Theory-GuidedModel'],\n",
+ " 'usefulForCalculatingIndex': ['http://www.geoscienceontology.org/svo/svl/variable#crop_production__seasonal_production_index']},\n",
+ " {'adjustableParameter': ['https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-weather_end_year',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-weather_start_year',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-weather_fertilizer_rate',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-weather_weed_fraction',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-weather_crop_name',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-weather_end_planting_day',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-weather_start_planting_day'],\n",
+ " 'author': ['https://w3id.org/okn/i/mint/silva_rafael'],\n",
+ " 'description': ['Cycles model (v0.9.4) set up for the Gambella '\n",
+ " 'region (Ethiopia), single point, with fixed '\n",
+ " 'planting dates. The weather file is not set '\n",
+ " 'to any default'],\n",
+ " 'hasCausalDiagram': ['https://w3id.org/okn/i/mint/cycles_cfg_complex_CAG',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_cfg_simple_CAG'],\n",
+ " 'hasComponentLocation': ['https://github.com/mintproject/MINT-WorkflowDomain/blob/18cf8de2b117fad2a4ede6eb1a439b76ff241486/WINGSWorkflowComponents/cycles-0.9.4-alpha/cycles-0.9.4-alpha.zip?raw=true'],\n",
+ " 'hasGrid': ['https://w3id.org/okn/i/mint/cycles_grid'],\n",
+ " 'hasImplementationScriptLocation': ['https://github.com/mintproject/MINT-WorkflowDomain/raw/master/WINGSWorkflowComponents/cycles-0.9.4-alpha/src/run'],\n",
+ " 'hasInput': ['https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-weather_weather',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-weather_soil',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-weather_crops'],\n",
+ " 'hasModelCategory': ['Agriculture'],\n",
+ " 'hasOutput': ['https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-weather_outputs',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-weather_weatherOutput',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-weather_season',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-weather_somF',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-weather_summary',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-weather_crop',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-weather_soilProfile',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-weather_nitrogen',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-weather_water'],\n",
+ " 'hasOutputTimeInterval': ['https://w3id.org/okn/i/mint/cycles_cfg_simple_TI'],\n",
+ " 'hasParameter': ['https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-weather_use_forcing',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-weather_end_year',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-weather_start_year',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-weather_fertilizer_rate',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-weather_weed_fraction',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-weather_crop_name',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-weather_end_planting_day',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-weather_start_planting_day'],\n",
+ " 'hasProcess': ['https://w3id.org/okn/i/mint/cycles_Nmineralizationandimmobalization_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_respiration_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_Ntransport_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_Nuptake_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_humification_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_transpiration_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_management_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_biomassgrowth_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_precipitation_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_solarradiation_process'],\n",
+ " 'hasRegion': ['https://w3id.org/okn/i/mint/Gambella'],\n",
+ " 'hasSoftwareImage': ['https://w3id.org/okn/i/mint/MINTPROJECT-CYCLES:0.9.4-ALPHA'],\n",
+ " 'hasSourceCode': ['https://w3id.org/okn/i/mint/source_cycles-0.9.4-alpha'],\n",
+ " 'hasUsageNotes': ['The crop file is location dependant. The '\n",
+ " 'weather file must be compatible with the '\n",
+ " 'year selected for simulation. Otherwise the '\n",
+ " 'model will not work. For example, if the '\n",
+ " 'weather file is for 2018, the model will '\n",
+ " 'output an error when attempting to simulate '\n",
+ " '2000..2017'],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-weather',\n",
+ " 'keywords': ['agriculture; cycles; crop growth; '\n",
+ " 'weather;soil;crop management'],\n",
+ " 'label': ['Cycles model (v0.9.4) set up for a single point in '\n",
+ " 'the Gambella region, with fixed planting dates and '\n",
+ " 'an adjustable weather file'],\n",
+ " 'parameterAssignmentMethod': ['Expert-configured'],\n",
+ " 'type': ['Theory-GuidedModel',\n",
+ " 'ModelConfigurationSetup',\n",
+ " 'ConfigurationSetup'],\n",
+ " 'usefulForCalculatingIndex': ['http://www.geoscienceontology.org/svo/svl/variable#crop_production__seasonal_production_index']},\n",
+ " {'adjustableParameter': ['https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-weather_end_planting_day',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-weather_start_year',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-weather_crop_name',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-weather_weed_fraction',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-weather_start_planting_day',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-weather_end_year',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-weather_fertilizer_rate'],\n",
+ " 'author': ['https://w3id.org/okn/i/mint/silva_rafael'],\n",
+ " 'description': ['Cycles model (v0.9.4) for the Pongo region. '\n",
+ " 'Planting dates can be selected as parameter '\n",
+ " 'values and the weather file can be chosen as '\n",
+ " 'an input'],\n",
+ " 'hasCausalDiagram': ['https://w3id.org/okn/i/mint/cycles_cfg_complex_CAG',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_cfg_simple_CAG'],\n",
+ " 'hasComponentLocation': ['https://github.com/mintproject/MINT-WorkflowDomain/blob/18cf8de2b117fad2a4ede6eb1a439b76ff241486/WINGSWorkflowComponents/cycles-0.9.4-alpha/cycles-0.9.4-alpha.zip?raw=true'],\n",
+ " 'hasGrid': ['https://w3id.org/okn/i/mint/cycles_grid'],\n",
+ " 'hasImplementationScriptLocation': ['https://github.com/mintproject/MINT-WorkflowDomain/raw/master/WINGSWorkflowComponents/cycles-0.9.4-alpha/src/run'],\n",
+ " 'hasInput': ['https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-weather_weather',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-weather_crops',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-weather_soil'],\n",
+ " 'hasModelCategory': ['Agriculture'],\n",
+ " 'hasOutput': ['https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-weather_crop',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-weather_nitrogen',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-weather_outputs',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-weather_water',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-weather_weatherOutput',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-weather_season',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-weather_soilProfile',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-weather_somF',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-weather_summary'],\n",
+ " 'hasOutputTimeInterval': ['https://w3id.org/okn/i/mint/cycles_cfg_simple_TI'],\n",
+ " 'hasParameter': ['https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-weather_end_planting_day',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-weather_start_year',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-weather_use_forcing',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-weather_crop_name',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-weather_weed_fraction',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-weather_start_planting_day',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-weather_end_year',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-weather_fertilizer_rate'],\n",
+ " 'hasProcess': ['https://w3id.org/okn/i/mint/cycles_Nuptake_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_humification_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_Ntransport_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_biomassgrowth_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_respiration_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_transpiration_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_Nmineralizationandimmobalization_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_solarradiation_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_precipitation_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_management_process'],\n",
+ " 'hasRegion': ['https://w3id.org/okn/i/mint/Pongo_Basin_SS'],\n",
+ " 'hasSoftwareImage': ['https://w3id.org/okn/i/mint/MINTPROJECT-CYCLES:0.9.4-ALPHA'],\n",
+ " 'hasSourceCode': ['https://w3id.org/okn/i/mint/source_cycles-0.9.4-alpha'],\n",
+ " 'hasUsageNotes': ['The weather file must be compatible with '\n",
+ " 'the year selected for simulation. Otherwise '\n",
+ " 'the model will not work. For example, if '\n",
+ " 'the weather file is for 2018, the model '\n",
+ " 'will output an error when attempting to '\n",
+ " 'simulate 2000..2017'],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-weather',\n",
+ " 'keywords': ['agriculture; cycles; crop growth; '\n",
+ " 'weather;soil;crop management'],\n",
+ " 'label': ['Cycles configured model (v0.9.4) for the Pongo '\n",
+ " 'region with planting dates. Weather file (single '\n",
+ " 'point) can be selected'],\n",
+ " 'parameterAssignmentMethod': ['Expert-configured'],\n",
+ " 'type': ['ModelConfigurationSetup',\n",
+ " 'ConfigurationSetup',\n",
+ " 'Theory-GuidedModel'],\n",
+ " 'usefulForCalculatingIndex': ['http://www.geoscienceontology.org/svo/svl/variable#crop_production__seasonal_production_index']},\n",
+ " {'adjustableParameter': ['https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-multiple-points_weed_fraction',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-multiple-points_start_planting_day',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-multiple-points_end_year',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-multiple-points_end_planting_day',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-multiple-points_start_year',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-multiple-points_fertilizer_rate',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-multiple-points_crop_name'],\n",
+ " 'author': ['https://w3id.org/okn/i/mint/silva_rafael'],\n",
+ " 'description': ['Cycles model (v0.9.4) set up for the Gambella '\n",
+ " 'region (Ethiopia), with multiple weather '\n",
+ " 'files for different points. Parameters are '\n",
+ " 'adjustable but files are not.'],\n",
+ " 'hasCausalDiagram': ['https://w3id.org/okn/i/mint/cycles_cfg_complex_CAG',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_cfg_simple_CAG'],\n",
+ " 'hasComponentLocation': ['https://github.com/mintproject/MINT-WorkflowDomain/blob/18cf8de2b117fad2a4ede6eb1a439b76ff241486/WINGSWorkflowComponents/cycles-0.9.4-alpha/cycles-0.9.4-alpha.zip?raw=true'],\n",
+ " 'hasGrid': ['https://w3id.org/okn/i/mint/cycles_grid'],\n",
+ " 'hasImplementationScriptLocation': ['https://github.com/mintproject/MINT-WorkflowDomain/raw/master/WINGSWorkflowComponents/cycles-0.9.4-alpha/src/run'],\n",
+ " 'hasInput': ['https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-multiple-points_crops',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-multiple-points_soil',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-multiple-points_weather'],\n",
+ " 'hasModelCategory': ['Agriculture'],\n",
+ " 'hasOutput': ['https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-multiple-points_soilProfile',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-multiple-points_summary',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-multiple-points_season',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-multiple-points_somF',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-multiple-points_outputs',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-multiple-points_crop',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-multiple-points_water',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-multiple-points_nitrogen',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-multiple-points_weatherOutput'],\n",
+ " 'hasOutputTimeInterval': ['https://w3id.org/okn/i/mint/cycles_cfg_simple_TI'],\n",
+ " 'hasParameter': ['https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-multiple-points_use_forcing',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-multiple-points_weed_fraction',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-multiple-points_start_planting_day',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-multiple-points_end_year',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-multiple-points_end_planting_day',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-multiple-points_start_year',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-multiple-points_fertilizer_rate',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-multiple-points_crop_name'],\n",
+ " 'hasProcess': ['https://w3id.org/okn/i/mint/cycles_biomassgrowth_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_Nmineralizationandimmobalization_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_Ntransport_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_transpiration_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_Nuptake_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_humification_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_respiration_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_management_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_solarradiation_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_precipitation_process'],\n",
+ " 'hasRegion': ['https://w3id.org/okn/i/mint/Gambella'],\n",
+ " 'hasSoftwareImage': ['https://w3id.org/okn/i/mint/MINTPROJECT-CYCLES:0.9.4-ALPHA'],\n",
+ " 'hasSourceCode': ['https://w3id.org/okn/i/mint/source_cycles-0.9.4-alpha'],\n",
+ " 'hasUsageNotes': ['The crop file is location dependant. The '\n",
+ " 'weather file must be compatible with the '\n",
+ " 'year selected for simulation. Otherwise the '\n",
+ " 'model will not work. For example, if the '\n",
+ " 'weather file is for 2018, the model will '\n",
+ " 'output an error when attempting to simulate '\n",
+ " '2000..2017'],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-ethiopia-multiple-points',\n",
+ " 'keywords': ['agriculture; cycles; crop growth; '\n",
+ " 'weather;soil;crop management'],\n",
+ " 'label': ['Cycles model (v0.9.4) set up for the full Gambella '\n",
+ " 'region (Ethiopia) with adjustable planting dates'],\n",
+ " 'parameterAssignmentMethod': ['Expert-configured'],\n",
+ " 'type': ['ModelConfigurationSetup',\n",
+ " 'Theory-GuidedModel',\n",
+ " 'ConfigurationSetup'],\n",
+ " 'usefulForCalculatingIndex': ['http://www.geoscienceontology.org/svo/svl/variable#crop_production__seasonal_production_index']},\n",
+ " {'author': ['https://w3id.org/okn/i/mint/silva_rafael'],\n",
+ " 'description': ['Cycles model (v0.9.4) set up for the Texas '\n",
+ " 'region. Parameters and files are already '\n",
+ " 'preconfigured'],\n",
+ " 'hasCausalDiagram': ['https://w3id.org/okn/i/mint/cycles_cfg_complex_CAG',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_cfg_simple_CAG'],\n",
+ " 'hasComponentLocation': ['https://github.com/mintproject/MINT-WorkflowDomain/blob/18cf8de2b117fad2a4ede6eb1a439b76ff241486/WINGSWorkflowComponents/cycles-0.9.4-alpha/cycles-0.9.4-alpha.zip?raw=true'],\n",
+ " 'hasGrid': ['https://w3id.org/okn/i/mint/cycles_grid'],\n",
+ " 'hasImplementationScriptLocation': ['https://github.com/mintproject/MINT-WorkflowDomain/raw/master/WINGSWorkflowComponents/cycles-0.9.4-alpha/src/run'],\n",
+ " 'hasInput': ['https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-simple-texas_soil',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-simple-texas_crops',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-simple-texas_weather'],\n",
+ " 'hasModelCategory': ['Agriculture'],\n",
+ " 'hasOutput': ['https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-simple-texas_water',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-simple-texas_nitrogen',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-simple-texas_outputs',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-simple-texas_season',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-simple-texas_somF',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-simple-texas_summary',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-simple-texas_soilProfile',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-simple-texas_crop',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-simple-texas_weatherOutput'],\n",
+ " 'hasOutputTimeInterval': ['https://w3id.org/okn/i/mint/cycles_cfg_simple_TI'],\n",
+ " 'hasParameter': ['https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-simple-texas_use_forcing',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-simple-texas_fertilizer_rate',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-simple-texas_weed_fraction',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-simple-texas_end_year',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-simple-texas_start_year',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-simple-texas_end_planting_day',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-simple-texas_crop_name',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-simple-texas_start_planting_day'],\n",
+ " 'hasProcess': ['https://w3id.org/okn/i/mint/cycles_Ntransport_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_transpiration_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_humification_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_respiration_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_Nuptake_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_biomassgrowth_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_Nmineralizationandimmobalization_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_solarradiation_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_precipitation_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_management_process'],\n",
+ " 'hasRegion': ['https://w3id.org/okn/i/mint/Texas'],\n",
+ " 'hasSoftwareImage': ['https://w3id.org/okn/i/mint/MINTPROJECT-CYCLES:0.9.4-ALPHA'],\n",
+ " 'hasSourceCode': ['https://w3id.org/okn/i/mint/source_cycles-0.9.4-alpha'],\n",
+ " 'hasUsageNotes': ['The crop file is location dependant. The '\n",
+ " 'weather file must be compatible with the '\n",
+ " 'year selected for simulation. Otherwise the '\n",
+ " 'model will not work. For example, if the '\n",
+ " 'weather file is for 2018, the model will '\n",
+ " 'output an error when attempting to simulate '\n",
+ " '2000..2017'],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-simple-texas',\n",
+ " 'keywords': ['agriculture; cycles; crop growth; '\n",
+ " 'weather;soil;crop management'],\n",
+ " 'label': ['Cycles model (v0.9.4) set up for a single point '\n",
+ " '(weather file) in Texas'],\n",
+ " 'parameterAssignmentMethod': ['Expert-configured'],\n",
+ " 'type': ['Theory-GuidedModel',\n",
+ " 'ConfigurationSetup',\n",
+ " 'ModelConfigurationSetup'],\n",
+ " 'usefulForCalculatingIndex': ['http://www.geoscienceontology.org/svo/svl/variable#crop_production__seasonal_production_index']},\n",
+ " {'adjustableParameter': ['https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo_start_year',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo_end_planting_day',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo_fertilizer_rate',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo_end_year',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo_weed_fraction',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo_crop_name',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo_start_planting_day'],\n",
+ " 'author': ['https://w3id.org/okn/i/mint/silva_rafael'],\n",
+ " 'description': ['Cycles model (v0.9.4) for the Pongo region. '\n",
+ " 'Planting dates can be selected as parameter '\n",
+ " 'values'],\n",
+ " 'hasCausalDiagram': ['https://w3id.org/okn/i/mint/cycles_cfg_simple_CAG',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_cfg_complex_CAG'],\n",
+ " 'hasComponentLocation': ['https://github.com/mintproject/MINT-WorkflowDomain/blob/18cf8de2b117fad2a4ede6eb1a439b76ff241486/WINGSWorkflowComponents/cycles-0.9.4-alpha/cycles-0.9.4-alpha.zip?raw=true'],\n",
+ " 'hasGrid': ['https://w3id.org/okn/i/mint/cycles_grid'],\n",
+ " 'hasImplementationScriptLocation': ['https://github.com/mintproject/MINT-WorkflowDomain/raw/master/WINGSWorkflowComponents/cycles-0.9.4-alpha/src/run'],\n",
+ " 'hasInput': ['https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo_weather',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo_soil',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo_crops'],\n",
+ " 'hasModelCategory': ['Agriculture'],\n",
+ " 'hasOutput': ['https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo_summary',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo_nitrogen',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo_water',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo_somF',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo_season',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo_soilProfile',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo_outputs',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo_crop',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo_weatherOutput'],\n",
+ " 'hasOutputTimeInterval': ['https://w3id.org/okn/i/mint/cycles_cfg_simple_TI'],\n",
+ " 'hasParameter': ['https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo_start_year',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo_use_forcing',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo_end_planting_day',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo_fertilizer_rate',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo_end_year',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo_weed_fraction',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo_crop_name',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo_start_planting_day'],\n",
+ " 'hasProcess': ['https://w3id.org/okn/i/mint/cycles_transpiration_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_Nuptake_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_humification_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_Nmineralizationandimmobalization_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_respiration_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_solarradiation_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_Ntransport_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_biomassgrowth_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_precipitation_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_management_process'],\n",
+ " 'hasRegion': ['https://w3id.org/okn/i/mint/Pongo_Basin_SS'],\n",
+ " 'hasSoftwareImage': ['https://w3id.org/okn/i/mint/MINTPROJECT-CYCLES:0.9.4-ALPHA'],\n",
+ " 'hasSourceCode': ['https://w3id.org/okn/i/mint/source_cycles-0.9.4-alpha'],\n",
+ " 'hasUsageNotes': ['The weather file must be compatible with '\n",
+ " 'the year selected for simulation. Otherwise '\n",
+ " 'the model will not work. For example, if '\n",
+ " 'the weather file is for 2018, the model '\n",
+ " 'will output an error when attempting to '\n",
+ " 'simulate 2000..2017'],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo',\n",
+ " 'keywords': ['agriculture; cycles; crop growth; '\n",
+ " 'weather;soil;crop management'],\n",
+ " 'label': ['Cycles configured model (v0.9.4) for the Pongo '\n",
+ " 'region (single point per weather file) with '\n",
+ " 'adjustable planting dates'],\n",
+ " 'parameterAssignmentMethod': ['Expert-configured'],\n",
+ " 'type': ['ModelConfigurationSetup',\n",
+ " 'Theory-GuidedModel',\n",
+ " 'ConfigurationSetup'],\n",
+ " 'usefulForCalculatingIndex': ['http://www.geoscienceontology.org/svo/svl/variable#crop_production__seasonal_production_index']},\n",
+ " {'adjustableParameter': ['https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-multple-points_weed_fraction',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-multple-points_start_planting_day',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-multple-points_start_year',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-multple-points_end_planting_day',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-multple-points_crop_name',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-multple-points_fertilizer_rate',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-multple-points_end_year'],\n",
+ " 'author': ['https://w3id.org/okn/i/mint/silva_rafael'],\n",
+ " 'description': ['Cycles model (v0.9.4) for the Pongo region '\n",
+ " 'with weather files for multiple points, which '\n",
+ " 'have been preselected for the region. '\n",
+ " 'Planting dates can be selected as parameter '\n",
+ " 'values'],\n",
+ " 'hasCausalDiagram': ['https://w3id.org/okn/i/mint/cycles_cfg_simple_CAG',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_cfg_complex_CAG'],\n",
+ " 'hasComponentLocation': ['https://github.com/mintproject/MINT-WorkflowDomain/blob/18cf8de2b117fad2a4ede6eb1a439b76ff241486/WINGSWorkflowComponents/cycles-0.9.4-alpha/cycles-0.9.4-alpha.zip?raw=true'],\n",
+ " 'hasGrid': ['https://w3id.org/okn/i/mint/cycles_grid'],\n",
+ " 'hasImplementationScriptLocation': ['https://github.com/mintproject/MINT-WorkflowDomain/raw/master/WINGSWorkflowComponents/cycles-0.9.4-alpha/src/run'],\n",
+ " 'hasInput': ['https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-multple-points_crops',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-multple-points_soil',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-multple-points_weather'],\n",
+ " 'hasModelCategory': ['Agriculture'],\n",
+ " 'hasOutput': ['https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-multple-points_somF',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-multple-points_outputs',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-multple-points_summary',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-multple-points_season',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-multple-points_crop',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-multple-points_weatherOutput',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-multple-points_water',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-multple-points_nitrogen',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-multple-points_soilProfile'],\n",
+ " 'hasOutputTimeInterval': ['https://w3id.org/okn/i/mint/cycles_cfg_simple_TI'],\n",
+ " 'hasParameter': ['https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-multple-points_weed_fraction',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-multple-points_start_planting_day',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-multple-points_start_year',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-multple-points_end_planting_day',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-multple-points_use_forcing',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-multple-points_crop_name',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-multple-points_fertilizer_rate',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-multple-points_end_year'],\n",
+ " 'hasProcess': ['https://w3id.org/okn/i/mint/cycles_humification_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_respiration_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_transpiration_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_Ntransport_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_Nuptake_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_Nmineralizationandimmobalization_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_precipitation_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_solarradiation_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_biomassgrowth_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_management_process'],\n",
+ " 'hasRegion': ['https://w3id.org/okn/i/mint/Pongo_Basin_SS'],\n",
+ " 'hasSoftwareImage': ['https://w3id.org/okn/i/mint/MINTPROJECT-CYCLES:0.9.4-ALPHA'],\n",
+ " 'hasSourceCode': ['https://w3id.org/okn/i/mint/source_cycles-0.9.4-alpha'],\n",
+ " 'hasUsageNotes': ['The weather file must be compatible with '\n",
+ " 'the year selected for simulation. Otherwise '\n",
+ " 'the model will not work. For example, if '\n",
+ " 'the weather file is for 2018, the model '\n",
+ " 'will output an error when attempting to '\n",
+ " 'simulate 2000..2017. '],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-pongo-multple-points',\n",
+ " 'keywords': ['agriculture; cycles; crop growth; '\n",
+ " 'weather;soil;crop management'],\n",
+ " 'label': ['Cycles model (v0.9.4) set up for the Pongo region '\n",
+ " '(South Sudan) with adjustable planting dates and '\n",
+ " 'for multiple points for weather (pre-selected)'],\n",
+ " 'parameterAssignmentMethod': ['Expert-configured'],\n",
+ " 'type': ['ConfigurationSetup',\n",
+ " 'Theory-GuidedModel',\n",
+ " 'ModelConfigurationSetup'],\n",
+ " 'usefulForCalculatingIndex': ['http://www.geoscienceontology.org/svo/svl/variable#crop_production__seasonal_production_index']},\n",
+ " {'adjustableParameter': ['https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas-weather_end_planting_day',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas-weather_fertilizer_rate',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas-weather_weed_fraction',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas-weather_crop_name',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas-weather_start_planting_day',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas-weather_end_year',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas-weather_start_year'],\n",
+ " 'author': ['https://w3id.org/okn/i/mint/silva_rafael'],\n",
+ " 'description': ['Cycles model (v0.9.4) set up for the Texas '\n",
+ " 'region. Planting dates can be selected as '\n",
+ " 'parameter values and the weather file can be '\n",
+ " 'chosen as an input'],\n",
+ " 'hasCausalDiagram': ['https://w3id.org/okn/i/mint/cycles_cfg_complex_CAG',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_cfg_simple_CAG'],\n",
+ " 'hasComponentLocation': ['https://github.com/mintproject/MINT-WorkflowDomain/blob/18cf8de2b117fad2a4ede6eb1a439b76ff241486/WINGSWorkflowComponents/cycles-0.9.4-alpha/cycles-0.9.4-alpha.zip?raw=true'],\n",
+ " 'hasGrid': ['https://w3id.org/okn/i/mint/cycles_grid'],\n",
+ " 'hasImplementationScriptLocation': ['https://github.com/mintproject/MINT-WorkflowDomain/raw/master/WINGSWorkflowComponents/cycles-0.9.4-alpha/src/run'],\n",
+ " 'hasInput': ['https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas-weather_weather',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas-weather_soil',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas-weather_crops'],\n",
+ " 'hasModelCategory': ['Agriculture'],\n",
+ " 'hasOutput': ['https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas-weather_soilProfile',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas-weather_somF',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas-weather_crop',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas-weather_weatherOutput',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas-weather_nitrogen',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas-weather_water',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas-weather_season',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas-weather_outputs',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas-weather_summary'],\n",
+ " 'hasOutputTimeInterval': ['https://w3id.org/okn/i/mint/cycles_cfg_simple_TI'],\n",
+ " 'hasParameter': ['https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas-weather_end_planting_day',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas-weather_fertilizer_rate',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas-weather_weed_fraction',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas-weather_crop_name',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas-weather_start_planting_day',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas-weather_use_forcing_fixed',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas-weather_end_year',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas-weather_start_year'],\n",
+ " 'hasProcess': ['https://w3id.org/okn/i/mint/cycles_Ntransport_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_Nmineralizationandimmobalization_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_humification_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_respiration_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_transpiration_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_Nuptake_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_biomassgrowth_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_precipitation_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_management_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_solarradiation_process'],\n",
+ " 'hasRegion': ['https://w3id.org/okn/i/mint/Texas'],\n",
+ " 'hasSoftwareImage': ['https://w3id.org/okn/i/mint/MINTPROJECT-CYCLES:0.9.4-ALPHA'],\n",
+ " 'hasSourceCode': ['https://w3id.org/okn/i/mint/source_cycles-0.9.4-alpha'],\n",
+ " 'hasUsageNotes': ['The crop file is location dependant. The '\n",
+ " 'weather file must be compatible with the '\n",
+ " 'year selected for simulation. Otherwise the '\n",
+ " 'model will not work. For example, if the '\n",
+ " 'weather file is for 2018, the model will '\n",
+ " 'output an error when attempting to simulate '\n",
+ " '2000..2017'],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas-weather',\n",
+ " 'keywords': ['agriculture; cycles; crop growth; '\n",
+ " 'weather;soil;crop management'],\n",
+ " 'label': ['Cycles model (v0.9.4) set up for a single point in '\n",
+ " 'Texas, with fixed planting dates and adjustable '\n",
+ " 'weather file (single point)'],\n",
+ " 'parameterAssignmentMethod': ['Expert-configured'],\n",
+ " 'type': ['ConfigurationSetup',\n",
+ " 'ModelConfigurationSetup',\n",
+ " 'Theory-GuidedModel'],\n",
+ " 'usefulForCalculatingIndex': ['http://www.geoscienceontology.org/svo/svl/variable#crop_production__seasonal_production_index']},\n",
+ " {'adjustableParameter': ['https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas_end_year',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas_weed_fraction',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas_crop_name',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas_start_year',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas_fertilizer_rate',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas_end_planting_day',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas_start_planting_day'],\n",
+ " 'author': ['https://w3id.org/okn/i/mint/silva_rafael'],\n",
+ " 'description': ['Cycles model (v0.9.4) set up for the Texas '\n",
+ " 'region. Parameters are adjustable but files '\n",
+ " 'are not'],\n",
+ " 'hasCausalDiagram': ['https://w3id.org/okn/i/mint/cycles_cfg_simple_CAG',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_cfg_complex_CAG'],\n",
+ " 'hasComponentLocation': ['https://github.com/mintproject/MINT-WorkflowDomain/blob/18cf8de2b117fad2a4ede6eb1a439b76ff241486/WINGSWorkflowComponents/cycles-0.9.4-alpha/cycles-0.9.4-alpha.zip?raw=true'],\n",
+ " 'hasGrid': ['https://w3id.org/okn/i/mint/cycles_grid'],\n",
+ " 'hasImplementationScriptLocation': ['https://github.com/mintproject/MINT-WorkflowDomain/raw/master/WINGSWorkflowComponents/cycles-0.9.4-alpha/src/run'],\n",
+ " 'hasInput': ['https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas_crops',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas_weather',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas_soil'],\n",
+ " 'hasModelCategory': ['Agriculture'],\n",
+ " 'hasOutput': ['https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas_somF',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas_weatherOutput',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas_water',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas_outputs',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas_soilProfile',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas_crop',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas_summary',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas_nitrogen',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas_season'],\n",
+ " 'hasOutputTimeInterval': ['https://w3id.org/okn/i/mint/cycles_cfg_simple_TI'],\n",
+ " 'hasParameter': ['https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas_end_year',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas_weed_fraction',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas_crop_name',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas_start_year',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas_use_forcing',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas_fertilizer_rate',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas_end_planting_day',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas_start_planting_day'],\n",
+ " 'hasProcess': ['https://w3id.org/okn/i/mint/cycles_transpiration_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_biomassgrowth_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_Nmineralizationandimmobalization_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_Ntransport_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_respiration_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_management_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_Nuptake_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_humification_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_solarradiation_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_precipitation_process'],\n",
+ " 'hasRegion': ['https://w3id.org/okn/i/mint/Texas'],\n",
+ " 'hasSoftwareImage': ['https://w3id.org/okn/i/mint/MINTPROJECT-CYCLES:0.9.4-ALPHA'],\n",
+ " 'hasSourceCode': ['https://w3id.org/okn/i/mint/source_cycles-0.9.4-alpha'],\n",
+ " 'hasUsageNotes': ['The crop file is location dependant. The '\n",
+ " 'weather file must be compatible with the '\n",
+ " 'year selected for simulation. Otherwise the '\n",
+ " 'model will not work. For example, if the '\n",
+ " 'weather file is for 2018, the model will '\n",
+ " 'output an error when attempting to simulate '\n",
+ " '2000..2017'],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-advanced-texas',\n",
+ " 'keywords': ['agriculture; cycles; crop growth; '\n",
+ " 'weather;soil;crop management'],\n",
+ " 'label': ['Cycles model (v0.9.4) set up for a single point '\n",
+ " '(weather file) in Texas with adjustable parameters'],\n",
+ " 'parameterAssignmentMethod': ['Expert-configured'],\n",
+ " 'type': ['ConfigurationSetup',\n",
+ " 'Theory-GuidedModel',\n",
+ " 'ModelConfigurationSetup'],\n",
+ " 'usefulForCalculatingIndex': ['http://www.geoscienceontology.org/svo/svl/variable#crop_production__seasonal_production_index']},\n",
+ " {'author': [{'id': 'https://w3id.org/okn/i/mint/silva_rafael',\n",
+ " 'label': ['Rafael Silva'],\n",
+ " 'name': ['Rafael Silva'],\n",
+ " 'type': 'sd:Person'}],\n",
+ " 'description': ['Cycles model (v0.9.4) for the Pongo region-no '\n",
+ " 'file or parameter selection'],\n",
+ " 'hasCausalDiagram': ['https://w3id.org/okn/i/mint/cycles_cfg_simple_CAG',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_cfg_complex_CAG'],\n",
+ " 'hasComponentLocation': ['https://github.com/mintproject/MINT-WorkflowDomain/blob/18cf8de2b117fad2a4ede6eb1a439b76ff241486/WINGSWorkflowComponents/cycles-0.9.4-alpha/cycles-0.9.4-alpha.zip?raw=true'],\n",
+ " 'hasGrid': ['https://w3id.org/okn/i/mint/cycles_grid'],\n",
+ " 'hasImplementationScriptLocation': ['https://github.com/mintproject/MINT-WorkflowDomain/raw/master/WINGSWorkflowComponents/cycles-0.9.4-alpha/src/run'],\n",
+ " 'hasInput': ['https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-simple-pongo_weather',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-simple-pongo_soil',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-simple-pongo_crops'],\n",
+ " 'hasModelCategory': ['Agriculture'],\n",
+ " 'hasOutput': ['https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-simple-pongo_outputs',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-simple-pongo_water',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-simple-pongo_nitrogen',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-simple-pongo_season',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-simple-pongo_soilProfile',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-simple-pongo_weatherOutput',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-simple-pongo_crop',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-simple-pongo_summary',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-simple-pongo_somF'],\n",
+ " 'hasOutputTimeInterval': ['https://w3id.org/okn/i/mint/cycles_cfg_simple_TI'],\n",
+ " 'hasParameter': ['https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-simple-pongo_weed_fraction',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-simple-pongo_start_year',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-simple-pongo_fertilizer_rate',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-simple-pongo_end_year',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-simple-pongo_start_planting_day',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-simple-pongo_use_forcing',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-simple-pongo_crop_name',\n",
+ " 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-simple-pongo_end_planting_day'],\n",
+ " 'hasProcess': ['https://w3id.org/okn/i/mint/cycles_Ntransport_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_respiration_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_biomassgrowth_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_Nuptake_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_humification_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_Nmineralizationandimmobalization_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_precipitation_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_solarradiation_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_transpiration_process',\n",
+ " 'https://w3id.org/okn/i/mint/cycles_management_process'],\n",
+ " 'hasRegion': ['https://w3id.org/okn/i/mint/Pongo_Basin_SS'],\n",
+ " 'hasSoftwareImage': ['https://w3id.org/okn/i/mint/MINTPROJECT-CYCLES:0.9.4-ALPHA'],\n",
+ " 'hasSourceCode': ['https://w3id.org/okn/i/mint/source_cycles-0.9.4-alpha'],\n",
+ " 'hasUsageNotes': ['The weather file must be compatible with '\n",
+ " 'the year selected for simulation. Otherwise '\n",
+ " 'the model will not work. For example, if '\n",
+ " 'the weather file is for 2018, the model '\n",
+ " 'will output an error when attempting to '\n",
+ " 'simulate 2000..2017'],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha-simple-pongo',\n",
+ " 'keywords': ['agriculture; cycles; crop growth; '\n",
+ " 'weather;soil;crop management'],\n",
+ " 'label': ['Cycles configured model (v0.9.4) for the Pongo '\n",
+ " 'region-no file selection'],\n",
+ " 'parameterAssignmentMethod': ['Expert-configured'],\n",
+ " 'type': ['Theory-GuidedModel',\n",
+ " 'ConfigurationSetup',\n",
+ " 'ModelConfigurationSetup'],\n",
+ " 'usefulForCalculatingIndex': ['http://www.geoscienceontology.org/svo/svl/variable#crop_production__seasonal_production_index']}],\n",
+ " 'has_software_image': [{'id': 'https://w3id.org/okn/i/mint/MINTPROJECT-CYCLES:0.9.4-ALPHA',\n",
+ " 'label': ['mintproject/cycles:0.9.4-alpha'],\n",
+ " 'type': 'SoftwareImage'}],\n",
+ " 'has_source_code': [{'codeRepository': ['https://github.com/mintproject/MINT-WorkflowDomain/raw/master/WINGSWorkflowComponents/cycles-0.9.4-alpha/'],\n",
+ " 'description': ['Code for creating an encapsulation of '\n",
+ " 'Cycles (v0.9.4)'],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/source_cycles-0.9.4-alpha',\n",
+ " 'label': ['Cycles configuration component (v2)'],\n",
+ " 'programmingLanguage': ['shell'],\n",
+ " 'type': 'SourceCode'}],\n",
+ " 'id': 'https://w3id.org/okn/i/mint/cycles-0.9.4-alpha',\n",
+ " 'keywords': ['agriculture; cycles; crop growth; weather;soil;crop management'],\n",
+ " 'label': ['Cycles configuration (v0.9.4) exposing weed fraction and '\n",
+ " 'fertilizer rate'],\n",
+ " 'type': ['ModelConfiguration', 'Theory-GuidedModel', 'SoftwareConfiguration'],\n",
+ " 'useful_for_calculating_index': [{'id': 'http://www.geoscienceontology.org/svo/svl/variable#crop_production__seasonal_production_index',\n",
+ " 'label': ['crop__seasonal_production_index'],\n",
+ " 'type': ['http://www.w3.org/2002/07/owl#NamedIndividual',\n",
+ " 'http://www.geoscienceontology.org/svo/svu#Variable']}]}\n"
+ ]
+ }
+ ],
+ "source": [
+ "# create an instance of the API class\n",
+ "api_instance = modelcatalog.ModelConfigurationApi()\n",
+ "resource_id = 'cycles-0.9.4-alpha' # str | The ID of the resource\n",
+ "\n",
+ "try:\n",
+ " # Get a ModelConfiguration\n",
+ " resource = api_instance.custom_modelconfigurations_id_get(resource_id, username=username)\n",
+ "except ApiException as e:\n",
+ " print(\"Exception when calling ModelConfigurationApi->custom_modelconfigurations_id_get: %s\\n\" % e)\n",
+ "pprint(resource)"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "### Obtain the parameters of a model configuration\n",
+ "\n",
+ "If you want more information about the parameters of the model configuration.\n"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 18,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "+-------------------------+----------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+=========================+====================================================+\n",
+ "| adjustsVariable | ['https://w3id.org/okn/i/mint/cycles_fraction'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| description | ['Areal fraction of weed: 0.05 is low, 0.25 is |\n",
+ "| | moderate, 1 is high, and 2 is the maximum (after 2 |\n",
+ "| | there will be no response from the model)'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDataType | ['float'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDefaultValue | ['0.05'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasMaximumAcceptedValue | ['2'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasMinimumAcceptedValue | ['0'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_wee |\n",
+ "| | d_fraction |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| label | ['weed_fraction'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| position | ['7'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| relevantForIntervention | ['https://w3id.org/okn/i/mint/weedControl'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| usesUnit | ['https://w3id.org/okn/i/mint/%25'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "\n",
+ "\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+=========================+====================================================+\n",
+ "| adjustsVariable | ['https://w3id.org/okn/i/mint/cycles_fraction'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| description | ['Areal fraction of weed: 0.05 is low, 0.25 is |\n",
+ "| | moderate, 1 is high, and 2 is the maximum (after 2 |\n",
+ "| | there will be no response from the model)'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDataType | ['float'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDefaultValue | ['0.05'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasMaximumAcceptedValue | ['2'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasMinimumAcceptedValue | ['0'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_wee |\n",
+ "| | d_fraction |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| label | ['weed_fraction'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| position | ['7'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| relevantForIntervention | ['https://w3id.org/okn/i/mint/weedControl'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| usesUnit | ['https://w3id.org/okn/i/mint/%25'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| adjustsVariable | ['https://w3id.org/okn/i/mint/cycles_crop_name'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| description | ['Name of the crop to run the simulation for. |\n",
+ "| | Accepted values vary according to the crop file |\n",
+ "| | provided. By default, these are: Maize,Sorghum,Pea |\n",
+ "| | nut,Sesame,Teff,SpringWheat,SpringBarley'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDataType | ['string'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDefaultValue | ['Maize'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_cro |\n",
+ "| | p_name |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| label | ['crop_name'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| position | ['3'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "\n",
+ "\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+=========================+====================================================+\n",
+ "| adjustsVariable | ['https://w3id.org/okn/i/mint/cycles_fraction'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| description | ['Areal fraction of weed: 0.05 is low, 0.25 is |\n",
+ "| | moderate, 1 is high, and 2 is the maximum (after 2 |\n",
+ "| | there will be no response from the model)'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDataType | ['float'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDefaultValue | ['0.05'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasMaximumAcceptedValue | ['2'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasMinimumAcceptedValue | ['0'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_wee |\n",
+ "| | d_fraction |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| label | ['weed_fraction'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| position | ['7'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| relevantForIntervention | ['https://w3id.org/okn/i/mint/weedControl'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| usesUnit | ['https://w3id.org/okn/i/mint/%25'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| adjustsVariable | ['https://w3id.org/okn/i/mint/cycles_crop_name'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| description | ['Name of the crop to run the simulation for. |\n",
+ "| | Accepted values vary according to the crop file |\n",
+ "| | provided. By default, these are: Maize,Sorghum,Pea |\n",
+ "| | nut,Sesame,Teff,SpringWheat,SpringBarley'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDataType | ['string'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDefaultValue | ['Maize'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_cro |\n",
+ "| | p_name |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| label | ['crop_name'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| position | ['3'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| adjustsVariable | ['https://w3id.org/okn/i/mint/cycles_end_year'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| description | ['Year when the simulation ends'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDataType | ['int'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDefaultValue | ['2017'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_end |\n",
+ "| | _year |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| label | ['end_year'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| position | ['2'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| usesUnit | ['https://w3id.org/okn/i/mint/yearT'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "\n",
+ "\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+=========================+====================================================+\n",
+ "| adjustsVariable | ['https://w3id.org/okn/i/mint/cycles_fraction'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| description | ['Areal fraction of weed: 0.05 is low, 0.25 is |\n",
+ "| | moderate, 1 is high, and 2 is the maximum (after 2 |\n",
+ "| | there will be no response from the model)'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDataType | ['float'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDefaultValue | ['0.05'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasMaximumAcceptedValue | ['2'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasMinimumAcceptedValue | ['0'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_wee |\n",
+ "| | d_fraction |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| label | ['weed_fraction'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| position | ['7'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| relevantForIntervention | ['https://w3id.org/okn/i/mint/weedControl'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| usesUnit | ['https://w3id.org/okn/i/mint/%25'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| adjustsVariable | ['https://w3id.org/okn/i/mint/cycles_crop_name'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| description | ['Name of the crop to run the simulation for. |\n",
+ "| | Accepted values vary according to the crop file |\n",
+ "| | provided. By default, these are: Maize,Sorghum,Pea |\n",
+ "| | nut,Sesame,Teff,SpringWheat,SpringBarley'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDataType | ['string'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDefaultValue | ['Maize'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_cro |\n",
+ "| | p_name |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| label | ['crop_name'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| position | ['3'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| adjustsVariable | ['https://w3id.org/okn/i/mint/cycles_end_year'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| description | ['Year when the simulation ends'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDataType | ['int'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDefaultValue | ['2017'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_end |\n",
+ "| | _year |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| label | ['end_year'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| position | ['2'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| usesUnit | ['https://w3id.org/okn/i/mint/yearT'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| adjustsVariable | ['https://w3id.org/okn/i/mint/cycles_mass'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| description | ['Mass of nitrogen fertilizer added each year |\n",
+ "| | (kg/ha). The model will multiply the mass by the |\n",
+ "| | concentration of the fertilizer (0.32). Teff crops |\n",
+ "| | should not surpass 320kg/ha'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDataType | ['float'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDefaultValue | ['0'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasMaximumAcceptedValue | ['1250'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasMinimumAcceptedValue | ['0'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_fer |\n",
+ "| | tilizer_rate |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| label | ['fertilizer_rate'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| position | ['6'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| usesUnit | ['https://w3id.org/okn/i/mint/kg_ha_1M_L_2'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "\n",
+ "\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+=========================+====================================================+\n",
+ "| adjustsVariable | ['https://w3id.org/okn/i/mint/cycles_fraction'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| description | ['Areal fraction of weed: 0.05 is low, 0.25 is |\n",
+ "| | moderate, 1 is high, and 2 is the maximum (after 2 |\n",
+ "| | there will be no response from the model)'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDataType | ['float'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDefaultValue | ['0.05'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasMaximumAcceptedValue | ['2'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasMinimumAcceptedValue | ['0'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_wee |\n",
+ "| | d_fraction |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| label | ['weed_fraction'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| position | ['7'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| relevantForIntervention | ['https://w3id.org/okn/i/mint/weedControl'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| usesUnit | ['https://w3id.org/okn/i/mint/%25'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| adjustsVariable | ['https://w3id.org/okn/i/mint/cycles_crop_name'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| description | ['Name of the crop to run the simulation for. |\n",
+ "| | Accepted values vary according to the crop file |\n",
+ "| | provided. By default, these are: Maize,Sorghum,Pea |\n",
+ "| | nut,Sesame,Teff,SpringWheat,SpringBarley'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDataType | ['string'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDefaultValue | ['Maize'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_cro |\n",
+ "| | p_name |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| label | ['crop_name'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| position | ['3'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| adjustsVariable | ['https://w3id.org/okn/i/mint/cycles_end_year'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| description | ['Year when the simulation ends'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDataType | ['int'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDefaultValue | ['2017'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_end |\n",
+ "| | _year |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| label | ['end_year'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| position | ['2'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| usesUnit | ['https://w3id.org/okn/i/mint/yearT'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| adjustsVariable | ['https://w3id.org/okn/i/mint/cycles_mass'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| description | ['Mass of nitrogen fertilizer added each year |\n",
+ "| | (kg/ha). The model will multiply the mass by the |\n",
+ "| | concentration of the fertilizer (0.32). Teff crops |\n",
+ "| | should not surpass 320kg/ha'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDataType | ['float'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDefaultValue | ['0'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasMaximumAcceptedValue | ['1250'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasMinimumAcceptedValue | ['0'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_fer |\n",
+ "| | tilizer_rate |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| label | ['fertilizer_rate'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| position | ['6'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| usesUnit | ['https://w3id.org/okn/i/mint/kg_ha_1M_L_2'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| adjustsVariable | ['https://w3id.org/okn/i/mint/cycles_start_year'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| description | ['Year when the simulation starts'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDataType | ['int'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDefaultValue | ['2000'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_sta |\n",
+ "| | rt_year |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| label | ['start_year'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| position | ['1'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| usesUnit | ['https://w3id.org/okn/i/mint/yearT'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "\n",
+ "\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+=========================+====================================================+\n",
+ "| adjustsVariable | ['https://w3id.org/okn/i/mint/cycles_fraction'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| description | ['Areal fraction of weed: 0.05 is low, 0.25 is |\n",
+ "| | moderate, 1 is high, and 2 is the maximum (after 2 |\n",
+ "| | there will be no response from the model)'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDataType | ['float'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDefaultValue | ['0.05'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasMaximumAcceptedValue | ['2'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasMinimumAcceptedValue | ['0'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_wee |\n",
+ "| | d_fraction |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| label | ['weed_fraction'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| position | ['7'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| relevantForIntervention | ['https://w3id.org/okn/i/mint/weedControl'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| usesUnit | ['https://w3id.org/okn/i/mint/%25'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| adjustsVariable | ['https://w3id.org/okn/i/mint/cycles_crop_name'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| description | ['Name of the crop to run the simulation for. |\n",
+ "| | Accepted values vary according to the crop file |\n",
+ "| | provided. By default, these are: Maize,Sorghum,Pea |\n",
+ "| | nut,Sesame,Teff,SpringWheat,SpringBarley'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDataType | ['string'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDefaultValue | ['Maize'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_cro |\n",
+ "| | p_name |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| label | ['crop_name'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| position | ['3'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| adjustsVariable | ['https://w3id.org/okn/i/mint/cycles_end_year'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| description | ['Year when the simulation ends'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDataType | ['int'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDefaultValue | ['2017'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_end |\n",
+ "| | _year |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| label | ['end_year'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| position | ['2'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| usesUnit | ['https://w3id.org/okn/i/mint/yearT'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| adjustsVariable | ['https://w3id.org/okn/i/mint/cycles_mass'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| description | ['Mass of nitrogen fertilizer added each year |\n",
+ "| | (kg/ha). The model will multiply the mass by the |\n",
+ "| | concentration of the fertilizer (0.32). Teff crops |\n",
+ "| | should not surpass 320kg/ha'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDataType | ['float'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDefaultValue | ['0'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasMaximumAcceptedValue | ['1250'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasMinimumAcceptedValue | ['0'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_fer |\n",
+ "| | tilizer_rate |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| label | ['fertilizer_rate'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| position | ['6'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| usesUnit | ['https://w3id.org/okn/i/mint/kg_ha_1M_L_2'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| adjustsVariable | ['https://w3id.org/okn/i/mint/cycles_start_year'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| description | ['Year when the simulation starts'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDataType | ['int'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDefaultValue | ['2000'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_sta |\n",
+ "| | rt_year |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| label | ['start_year'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| position | ['1'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| usesUnit | ['https://w3id.org/okn/i/mint/yearT'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| adjustsVariable | ['https://w3id.org/okn/i/mint/cycles_end_doy'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| description | ['Day of the year for the end of the planting |\n",
+ "| | window'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDataType | ['int'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDefaultValue | ['149'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasMaximumAcceptedValue | ['365'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasMinimumAcceptedValue | ['1'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_end |\n",
+ "| | _planting_day |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| label | ['end_planting_day'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| position | ['5'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| relevantForIntervention | ['https://w3id.org/okn/i/mint/plantingWindows'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| usesUnit | ['https://w3id.org/okn/i/mint/dayT'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "\n",
+ "\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+=========================+====================================================+\n",
+ "| adjustsVariable | ['https://w3id.org/okn/i/mint/cycles_fraction'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| description | ['Areal fraction of weed: 0.05 is low, 0.25 is |\n",
+ "| | moderate, 1 is high, and 2 is the maximum (after 2 |\n",
+ "| | there will be no response from the model)'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDataType | ['float'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDefaultValue | ['0.05'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasMaximumAcceptedValue | ['2'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasMinimumAcceptedValue | ['0'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_wee |\n",
+ "| | d_fraction |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| label | ['weed_fraction'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| position | ['7'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| relevantForIntervention | ['https://w3id.org/okn/i/mint/weedControl'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| usesUnit | ['https://w3id.org/okn/i/mint/%25'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| adjustsVariable | ['https://w3id.org/okn/i/mint/cycles_crop_name'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| description | ['Name of the crop to run the simulation for. |\n",
+ "| | Accepted values vary according to the crop file |\n",
+ "| | provided. By default, these are: Maize,Sorghum,Pea |\n",
+ "| | nut,Sesame,Teff,SpringWheat,SpringBarley'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDataType | ['string'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDefaultValue | ['Maize'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_cro |\n",
+ "| | p_name |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| label | ['crop_name'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| position | ['3'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| adjustsVariable | ['https://w3id.org/okn/i/mint/cycles_end_year'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| description | ['Year when the simulation ends'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDataType | ['int'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDefaultValue | ['2017'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_end |\n",
+ "| | _year |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| label | ['end_year'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| position | ['2'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| usesUnit | ['https://w3id.org/okn/i/mint/yearT'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| adjustsVariable | ['https://w3id.org/okn/i/mint/cycles_mass'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| description | ['Mass of nitrogen fertilizer added each year |\n",
+ "| | (kg/ha). The model will multiply the mass by the |\n",
+ "| | concentration of the fertilizer (0.32). Teff crops |\n",
+ "| | should not surpass 320kg/ha'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDataType | ['float'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDefaultValue | ['0'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasMaximumAcceptedValue | ['1250'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasMinimumAcceptedValue | ['0'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_fer |\n",
+ "| | tilizer_rate |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| label | ['fertilizer_rate'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| position | ['6'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| usesUnit | ['https://w3id.org/okn/i/mint/kg_ha_1M_L_2'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| adjustsVariable | ['https://w3id.org/okn/i/mint/cycles_start_year'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| description | ['Year when the simulation starts'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDataType | ['int'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDefaultValue | ['2000'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_sta |\n",
+ "| | rt_year |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| label | ['start_year'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| position | ['1'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| usesUnit | ['https://w3id.org/okn/i/mint/yearT'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| adjustsVariable | ['https://w3id.org/okn/i/mint/cycles_end_doy'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| description | ['Day of the year for the end of the planting |\n",
+ "| | window'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDataType | ['int'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDefaultValue | ['149'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasMaximumAcceptedValue | ['365'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasMinimumAcceptedValue | ['1'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_end |\n",
+ "| | _planting_day |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| label | ['end_planting_day'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| position | ['5'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| relevantForIntervention | ['https://w3id.org/okn/i/mint/plantingWindows'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| usesUnit | ['https://w3id.org/okn/i/mint/dayT'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| adjustsVariable | ['https://w3id.org/okn/i/mint/cycles_doy'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| description | ['Day of the year for the start of the planting |\n",
+ "| | window'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDataType | ['int'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDefaultValue | ['100'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasMaximumAcceptedValue | ['365'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasMinimumAcceptedValue | ['1'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_sta |\n",
+ "| | rt_planting_day |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| label | ['start_planting_day'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| position | ['4'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| relevantForIntervention | ['https://w3id.org/okn/i/mint/plantingWindows'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| usesUnit | ['https://w3id.org/okn/i/mint/dayT'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "\n",
+ "\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+=========================+====================================================+\n",
+ "| adjustsVariable | ['https://w3id.org/okn/i/mint/cycles_fraction'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| description | ['Areal fraction of weed: 0.05 is low, 0.25 is |\n",
+ "| | moderate, 1 is high, and 2 is the maximum (after 2 |\n",
+ "| | there will be no response from the model)'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDataType | ['float'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDefaultValue | ['0.05'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasMaximumAcceptedValue | ['2'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasMinimumAcceptedValue | ['0'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_wee |\n",
+ "| | d_fraction |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| label | ['weed_fraction'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| position | ['7'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| relevantForIntervention | ['https://w3id.org/okn/i/mint/weedControl'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| usesUnit | ['https://w3id.org/okn/i/mint/%25'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| adjustsVariable | ['https://w3id.org/okn/i/mint/cycles_crop_name'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| description | ['Name of the crop to run the simulation for. |\n",
+ "| | Accepted values vary according to the crop file |\n",
+ "| | provided. By default, these are: Maize,Sorghum,Pea |\n",
+ "| | nut,Sesame,Teff,SpringWheat,SpringBarley'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDataType | ['string'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDefaultValue | ['Maize'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_cro |\n",
+ "| | p_name |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| label | ['crop_name'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| position | ['3'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| adjustsVariable | ['https://w3id.org/okn/i/mint/cycles_end_year'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| description | ['Year when the simulation ends'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDataType | ['int'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDefaultValue | ['2017'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_end |\n",
+ "| | _year |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| label | ['end_year'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| position | ['2'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| usesUnit | ['https://w3id.org/okn/i/mint/yearT'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| adjustsVariable | ['https://w3id.org/okn/i/mint/cycles_mass'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| description | ['Mass of nitrogen fertilizer added each year |\n",
+ "| | (kg/ha). The model will multiply the mass by the |\n",
+ "| | concentration of the fertilizer (0.32). Teff crops |\n",
+ "| | should not surpass 320kg/ha'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDataType | ['float'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDefaultValue | ['0'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasMaximumAcceptedValue | ['1250'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasMinimumAcceptedValue | ['0'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_fer |\n",
+ "| | tilizer_rate |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| label | ['fertilizer_rate'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| position | ['6'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| usesUnit | ['https://w3id.org/okn/i/mint/kg_ha_1M_L_2'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| adjustsVariable | ['https://w3id.org/okn/i/mint/cycles_start_year'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| description | ['Year when the simulation starts'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDataType | ['int'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDefaultValue | ['2000'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_sta |\n",
+ "| | rt_year |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| label | ['start_year'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| position | ['1'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| usesUnit | ['https://w3id.org/okn/i/mint/yearT'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| adjustsVariable | ['https://w3id.org/okn/i/mint/cycles_end_doy'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| description | ['Day of the year for the end of the planting |\n",
+ "| | window'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDataType | ['int'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDefaultValue | ['149'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasMaximumAcceptedValue | ['365'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasMinimumAcceptedValue | ['1'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_end |\n",
+ "| | _planting_day |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| label | ['end_planting_day'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| position | ['5'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| relevantForIntervention | ['https://w3id.org/okn/i/mint/plantingWindows'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| usesUnit | ['https://w3id.org/okn/i/mint/dayT'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| adjustsVariable | ['https://w3id.org/okn/i/mint/cycles_doy'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| description | ['Day of the year for the start of the planting |\n",
+ "| | window'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDataType | ['int'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDefaultValue | ['100'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasMaximumAcceptedValue | ['365'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasMinimumAcceptedValue | ['1'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_sta |\n",
+ "| | rt_planting_day |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| label | ['start_planting_day'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| position | ['4'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| relevantForIntervention | ['https://w3id.org/okn/i/mint/plantingWindows'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| usesUnit | ['https://w3id.org/okn/i/mint/dayT'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| description | ['Use forcing data from a hydrology model (when |\n",
+ "| | available)'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDataType | ['boolean'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| hasDefaultValue | ['FALSE'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_use |\n",
+ "| | _forcing |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| label | ['use_forcing'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "| position | ['8'] |\n",
+ "+-------------------------+----------------------------------------------------+\n",
+ "\n",
+ "\n"
+ ]
+ }
+ ],
+ "source": [
+ "parameters = resource.has_parameter\n",
+ "print_resources(parameters)"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "### Obtain the inputs of a model configuration\n"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 19,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "+-------------------+----------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+===================+==========================================================+\n",
+ "| description | ['Cycles soil description file. Soil files typically |\n",
+ "| | have a suffix of .soil, but any naming convention can be |\n",
+ "| | used as long as it matches the soil file name listed in |\n",
+ "| | the control file. The soil file starts with three lines |\n",
+ "| | at the beginning with the keyword tags CURVE_NUMBER, |\n",
+ "| | SLOPE, and TOTAL_LAYERS, with each keyword followed by a |\n",
+ "| | tab-delimited value.'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['soil'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_bd', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_som', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_dz', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_rv', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_smc', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_clay', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_cn', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_layer', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_silt', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_slope'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_soil |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_soil'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['2'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "\n",
+ "\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+===================+==========================================================+\n",
+ "| description | ['Cycles soil description file. Soil files typically |\n",
+ "| | have a suffix of .soil, but any naming convention can be |\n",
+ "| | used as long as it matches the soil file name listed in |\n",
+ "| | the control file. The soil file starts with three lines |\n",
+ "| | at the beginning with the keyword tags CURVE_NUMBER, |\n",
+ "| | SLOPE, and TOTAL_LAYERS, with each keyword followed by a |\n",
+ "| | tab-delimited value.'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['soil'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_bd', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_som', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_dz', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_rv', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_smc', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_clay', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_cn', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_layer', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_silt', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_slope'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_soil |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_soil'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['2'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| description | ['The crop description file defines physiological and |\n",
+ "| | management parameters that control the growth and |\n",
+ "| | harvest of crops used in the simulation. Each crop used |\n",
+ "| | in the simulation must have an entry in the crop |\n",
+ "| | description file. Each crop entry begins with the |\n",
+ "| | keyword tag NAME.'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['crop'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_standing_residue_at |\n",
+ "| | _harvest', 'https://w3id.org/okn/i/mint/cycles_name', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_lwp_stress_onset', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_crop_harvest_index', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_harvest_timing', 'ht |\n",
+ "| | tps://w3id.org/okn/i/mint/cycles_clipping_biomass_thresh |\n",
+ "| | old_lower', 'https://w3id.org/okn/i/mint/cycles_thermal_ |\n",
+ "| | time_to_emergence', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_annual', 'https://w3 |\n",
+ "| | id.org/okn/i/mint/cycles_min_temperature_for_cold_damage |\n",
+ "| | ', 'https://w3id.org/okn/i/mint/cycles_threshold_tempera |\n",
+ "| | ture_for_transpiration', 'https://w3id.org/okn/i/mint/cy |\n",
+ "| | cles_maximum_rooting_depth', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_maturity_tt', 'https |\n",
+ "| | ://w3id.org/okn/i/mint/cycles_base_temperature_for_devel |\n",
+ "| | opment', 'https://w3id.org/okn/i/mint/cycles_legume', 'h |\n",
+ "| | ttps://w3id.org/okn/i/mint/cycles_transpiration_use_effi |\n",
+ "| | ciency', 'https://w3id.org/okn/i/mint/cycles_kc', 'https |\n",
+ "| | ://w3id.org/okn/i/mint/cycles_final_partitioning_to_shoo |\n",
+ "| | t', 'https://w3id.org/okn/i/mint/cycles_c3', 'https://w3 |\n",
+ "| | id.org/okn/i/mint/cycles_max_temperature_for_development |\n",
+ "| | ', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_n_dilution_slope', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_residue_removed', 'h |\n",
+ "| | ttps://w3id.org/okn/i/mint/cycles_initial_partitioning_t |\n",
+ "| | o_shoot', 'https://w3id.org/okn/i/mint/cycles_threshold_ |\n",
+ "| | temperature_for_cold_damage', 'https://w3id.org/okn/i/mi |\n",
+ "| | nt/cycles_maximum_harvest_index', 'https://w3id.org/okn/ |\n",
+ "| | i/mint/cycles_optimum_temperature_for_development', 'htt |\n",
+ "| | ps://w3id.org/okn/i/mint/cycles_min_temperature_for_tran |\n",
+ "| | spiration', 'https://w3id.org/okn/i/mint/cycles_clipping |\n",
+ "| | _biomass_threshold_upper', 'https://w3id.org/okn/i/mint/ |\n",
+ "| | cycles_radiation_use_efficiency', 'https://w3id.org/okn/ |\n",
+ "| | i/mint/cycles_n_max_concentration', 'https://w3id.org/ok |\n",
+ "| | n/i/mint/cycles_harvest_biomass_destiny', 'https://w3id. |\n",
+ "| | org/okn/i/mint/cycles_minimum_harvest_index', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_lwp_wilting_point', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_flowering_tt', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_transpiration_max', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_maximum_soil_coverag |\n",
+ "| | e'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_crops |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_crops'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['3'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "\n",
+ "\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+===================+==========================================================+\n",
+ "| description | ['Cycles soil description file. Soil files typically |\n",
+ "| | have a suffix of .soil, but any naming convention can be |\n",
+ "| | used as long as it matches the soil file name listed in |\n",
+ "| | the control file. The soil file starts with three lines |\n",
+ "| | at the beginning with the keyword tags CURVE_NUMBER, |\n",
+ "| | SLOPE, and TOTAL_LAYERS, with each keyword followed by a |\n",
+ "| | tab-delimited value.'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['soil'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_bd', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_som', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_dz', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_rv', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_smc', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_clay', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_cn', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_layer', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_silt', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_slope'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_soil |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_soil'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['2'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| description | ['The crop description file defines physiological and |\n",
+ "| | management parameters that control the growth and |\n",
+ "| | harvest of crops used in the simulation. Each crop used |\n",
+ "| | in the simulation must have an entry in the crop |\n",
+ "| | description file. Each crop entry begins with the |\n",
+ "| | keyword tag NAME.'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['crop'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_standing_residue_at |\n",
+ "| | _harvest', 'https://w3id.org/okn/i/mint/cycles_name', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_lwp_stress_onset', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_crop_harvest_index', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_harvest_timing', 'ht |\n",
+ "| | tps://w3id.org/okn/i/mint/cycles_clipping_biomass_thresh |\n",
+ "| | old_lower', 'https://w3id.org/okn/i/mint/cycles_thermal_ |\n",
+ "| | time_to_emergence', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_annual', 'https://w3 |\n",
+ "| | id.org/okn/i/mint/cycles_min_temperature_for_cold_damage |\n",
+ "| | ', 'https://w3id.org/okn/i/mint/cycles_threshold_tempera |\n",
+ "| | ture_for_transpiration', 'https://w3id.org/okn/i/mint/cy |\n",
+ "| | cles_maximum_rooting_depth', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_maturity_tt', 'https |\n",
+ "| | ://w3id.org/okn/i/mint/cycles_base_temperature_for_devel |\n",
+ "| | opment', 'https://w3id.org/okn/i/mint/cycles_legume', 'h |\n",
+ "| | ttps://w3id.org/okn/i/mint/cycles_transpiration_use_effi |\n",
+ "| | ciency', 'https://w3id.org/okn/i/mint/cycles_kc', 'https |\n",
+ "| | ://w3id.org/okn/i/mint/cycles_final_partitioning_to_shoo |\n",
+ "| | t', 'https://w3id.org/okn/i/mint/cycles_c3', 'https://w3 |\n",
+ "| | id.org/okn/i/mint/cycles_max_temperature_for_development |\n",
+ "| | ', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_n_dilution_slope', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_residue_removed', 'h |\n",
+ "| | ttps://w3id.org/okn/i/mint/cycles_initial_partitioning_t |\n",
+ "| | o_shoot', 'https://w3id.org/okn/i/mint/cycles_threshold_ |\n",
+ "| | temperature_for_cold_damage', 'https://w3id.org/okn/i/mi |\n",
+ "| | nt/cycles_maximum_harvest_index', 'https://w3id.org/okn/ |\n",
+ "| | i/mint/cycles_optimum_temperature_for_development', 'htt |\n",
+ "| | ps://w3id.org/okn/i/mint/cycles_min_temperature_for_tran |\n",
+ "| | spiration', 'https://w3id.org/okn/i/mint/cycles_clipping |\n",
+ "| | _biomass_threshold_upper', 'https://w3id.org/okn/i/mint/ |\n",
+ "| | cycles_radiation_use_efficiency', 'https://w3id.org/okn/ |\n",
+ "| | i/mint/cycles_n_max_concentration', 'https://w3id.org/ok |\n",
+ "| | n/i/mint/cycles_harvest_biomass_destiny', 'https://w3id. |\n",
+ "| | org/okn/i/mint/cycles_minimum_harvest_index', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_lwp_wilting_point', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_flowering_tt', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_transpiration_max', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_maximum_soil_coverag |\n",
+ "| | e'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_crops |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_crops'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['3'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| description | ['Cycles weather description file. The weather files |\n",
+ "| | typically have a suffix of .weather, but any suffix or |\n",
+ "| | file naming convention can be used so long as the name |\n",
+ "| | of the weather file listed in the control file exactly |\n",
+ "| | matches the name of the weather file to be used in the |\n",
+ "| | input directory. Weather files contain three lines at |\n",
+ "| | the beginning with the keyword tags LATITUDE, ALTITUDE, |\n",
+ "| | and SCREENING_HEIGHT, each followed by a tab-delimited |\n",
+ "| | value. Altitude and screening height values should be |\n",
+ "| | entered in meters. Screening height is the height of the |\n",
+ "| | weather station instruments above the land surface. |\n",
+ "| | Following these three lines is a row of tab-delimited |\n",
+ "| | column headers in the order YEAR, DOY, PP, TX, TN, |\n",
+ "| | SOLAR, RHX, RHN, WIND'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['weather'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_hx', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_pp', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_sr', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_ws', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_tn', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_tx', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_hn'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_weather |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_weather'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['1'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "\n",
+ "\n"
+ ]
+ }
+ ],
+ "source": [
+ "inputs = resource.has_input\n",
+ "print_resources(inputs)"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "### Obtain the outpus of a model configuration\n"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 20,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "+-------------------+----------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+===================+==========================================================+\n",
+ "| description | ['Results in this file are for the sum of all layers in |\n",
+ "| | the soil profile, including surface residues'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['dat'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_res_c_decomp', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_humified_c2', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_final_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_res_biomass_in', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_c_diff', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_respired_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_init_c_mass', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_c_decomp', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_biomass_in', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_year'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_soilProfi |\n",
+ "| | le |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_soilProfile'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['1'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "\n",
+ "\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+===================+==========================================================+\n",
+ "| description | ['Results in this file are for the sum of all layers in |\n",
+ "| | the soil profile, including surface residues'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['dat'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_res_c_decomp', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_humified_c2', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_final_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_res_biomass_in', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_c_diff', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_respired_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_init_c_mass', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_c_decomp', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_biomass_in', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_year'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_soilProfi |\n",
+ "| | le |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_soilProfile'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['1'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| description | ['Cycles crop output file'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['dat'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_n_fixation', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_ag_biomass', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_thermal_time', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_stage', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_n_added', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_frac_intercep', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_ag_n_concn', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_cum._biomass', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_water_stress', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_ag_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_date', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_biomass', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_crop_v', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_total_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_potential_tr', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_n_stress'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_crop |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_crop'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['3'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "\n",
+ "\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+===================+==========================================================+\n",
+ "| description | ['Results in this file are for the sum of all layers in |\n",
+ "| | the soil profile, including surface residues'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['dat'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_res_c_decomp', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_humified_c2', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_final_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_res_biomass_in', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_c_diff', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_respired_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_init_c_mass', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_c_decomp', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_biomass_in', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_year'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_soilProfi |\n",
+ "| | le |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_soilProfile'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['1'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| description | ['Cycles crop output file'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['dat'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_n_fixation', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_ag_biomass', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_thermal_time', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_stage', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_n_added', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_frac_intercep', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_ag_n_concn', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_cum._biomass', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_water_stress', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_ag_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_date', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_biomass', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_crop_v', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_total_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_potential_tr', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_n_stress'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_crop |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_crop'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['3'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| description | ['Cycles water file'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['dat'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_plant_evap', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_runoff', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_irrigation', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_res_evap', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_snow_sub', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_drainage', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_date', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_transpiration', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_soil_evap', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_swc', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_infiltration'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_water |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_water'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['8'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "\n",
+ "\n"
+ ]
+ },
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "+-------------------+----------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+===================+==========================================================+\n",
+ "| description | ['Results in this file are for the sum of all layers in |\n",
+ "| | the soil profile, including surface residues'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['dat'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_res_c_decomp', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_humified_c2', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_final_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_res_biomass_in', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_c_diff', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_respired_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_init_c_mass', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_c_decomp', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_biomass_in', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_year'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_soilProfi |\n",
+ "| | le |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_soilProfile'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['1'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| description | ['Cycles crop output file'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['dat'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_n_fixation', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_ag_biomass', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_thermal_time', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_stage', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_n_added', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_frac_intercep', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_ag_n_concn', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_cum._biomass', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_water_stress', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_ag_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_date', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_biomass', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_crop_v', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_total_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_potential_tr', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_n_stress'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_crop |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_crop'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['3'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| description | ['Cycles water file'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['dat'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_plant_evap', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_runoff', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_irrigation', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_res_evap', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_snow_sub', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_drainage', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_date', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_transpiration', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_soil_evap', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_swc', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_infiltration'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_water |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_water'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['8'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| description | ['The summary file provides a summarized output of total |\n",
+ "| | C inputs over the duration of the simulation and average |\n",
+ "| | annual rates for N cycling processes.'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['dat'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_res_c_input', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_init_prof_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_no3_leach', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_n_immob', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_c_input', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_nh3_volatil', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_soil_c_chg/yr', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_nh4_leach', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_retained_res', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_tot_n2o_emi', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_no3_denit', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_final_prof_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_net_n_min', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_resp_soil_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_produced_root', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_gross_n_min', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_n2o_fr_nit', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_humified_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_prof_c_diff', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_resp_res_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_n2o_fr_deni', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_nh4_nitrif'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_summary |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_summary'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['6'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "\n",
+ "\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+===================+==========================================================+\n",
+ "| description | ['Results in this file are for the sum of all layers in |\n",
+ "| | the soil profile, including surface residues'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['dat'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_res_c_decomp', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_humified_c2', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_final_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_res_biomass_in', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_c_diff', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_respired_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_init_c_mass', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_c_decomp', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_biomass_in', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_year'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_soilProfi |\n",
+ "| | le |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_soilProfile'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['1'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| description | ['Cycles crop output file'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['dat'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_n_fixation', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_ag_biomass', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_thermal_time', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_stage', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_n_added', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_frac_intercep', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_ag_n_concn', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_cum._biomass', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_water_stress', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_ag_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_date', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_biomass', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_crop_v', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_total_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_potential_tr', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_n_stress'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_crop |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_crop'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['3'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| description | ['Cycles water file'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['dat'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_plant_evap', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_runoff', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_irrigation', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_res_evap', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_snow_sub', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_drainage', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_date', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_transpiration', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_soil_evap', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_swc', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_infiltration'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_water |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_water'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['8'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| description | ['The summary file provides a summarized output of total |\n",
+ "| | C inputs over the duration of the simulation and average |\n",
+ "| | annual rates for N cycling processes.'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['dat'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_res_c_input', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_init_prof_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_no3_leach', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_n_immob', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_c_input', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_nh3_volatil', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_soil_c_chg/yr', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_nh4_leach', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_retained_res', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_tot_n2o_emi', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_no3_denit', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_final_prof_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_net_n_min', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_resp_soil_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_produced_root', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_gross_n_min', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_n2o_fr_nit', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_humified_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_prof_c_diff', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_resp_res_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_n2o_fr_deni', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_nh4_nitrif'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_summary |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_summary'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['6'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| description | ['The season.dat file provides information about each |\n",
+ "| | crop harvest.'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['dat'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_root_biomass', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_actual_tr', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_n_in_harvest', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_cum._n_stress', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_crop_v', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_forage_yield', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_total_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_n_in_residue', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_grain_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_n_concn_forage', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_potential_tr', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_total_biomass', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_harvest_index', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_ag_residue', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_forage_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_date', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_grain_yield', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_soil_evapr'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_season |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_season'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['5'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "\n",
+ "\n"
+ ]
+ },
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "+-------------------+----------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+===================+==========================================================+\n",
+ "| description | ['Results in this file are for the sum of all layers in |\n",
+ "| | the soil profile, including surface residues'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['dat'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_res_c_decomp', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_humified_c2', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_final_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_res_biomass_in', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_c_diff', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_respired_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_init_c_mass', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_c_decomp', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_biomass_in', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_year'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_soilProfi |\n",
+ "| | le |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_soilProfile'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['1'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| description | ['Cycles crop output file'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['dat'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_n_fixation', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_ag_biomass', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_thermal_time', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_stage', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_n_added', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_frac_intercep', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_ag_n_concn', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_cum._biomass', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_water_stress', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_ag_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_date', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_biomass', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_crop_v', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_total_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_potential_tr', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_n_stress'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_crop |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_crop'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['3'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| description | ['Cycles water file'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['dat'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_plant_evap', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_runoff', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_irrigation', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_res_evap', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_snow_sub', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_drainage', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_date', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_transpiration', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_soil_evap', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_swc', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_infiltration'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_water |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_water'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['8'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| description | ['The summary file provides a summarized output of total |\n",
+ "| | C inputs over the duration of the simulation and average |\n",
+ "| | annual rates for N cycling processes.'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['dat'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_res_c_input', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_init_prof_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_no3_leach', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_n_immob', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_c_input', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_nh3_volatil', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_soil_c_chg/yr', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_nh4_leach', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_retained_res', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_tot_n2o_emi', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_no3_denit', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_final_prof_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_net_n_min', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_resp_soil_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_produced_root', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_gross_n_min', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_n2o_fr_nit', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_humified_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_prof_c_diff', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_resp_res_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_n2o_fr_deni', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_nh4_nitrif'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_summary |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_summary'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['6'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| description | ['The season.dat file provides information about each |\n",
+ "| | crop harvest.'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['dat'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_root_biomass', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_actual_tr', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_n_in_harvest', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_cum._n_stress', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_crop_v', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_forage_yield', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_total_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_n_in_residue', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_grain_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_n_concn_forage', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_potential_tr', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_total_biomass', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_harvest_index', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_ag_residue', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_forage_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_date', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_grain_yield', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_soil_evapr'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_season |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_season'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['5'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| description | ['Cycles season configuration file'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['txt'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_outputs |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_outputs'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['9'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "\n",
+ "\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+===================+==========================================================+\n",
+ "| description | ['Results in this file are for the sum of all layers in |\n",
+ "| | the soil profile, including surface residues'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['dat'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_res_c_decomp', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_humified_c2', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_final_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_res_biomass_in', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_c_diff', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_respired_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_init_c_mass', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_c_decomp', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_biomass_in', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_year'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_soilProfi |\n",
+ "| | le |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_soilProfile'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['1'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| description | ['Cycles crop output file'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['dat'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_n_fixation', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_ag_biomass', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_thermal_time', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_stage', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_n_added', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_frac_intercep', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_ag_n_concn', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_cum._biomass', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_water_stress', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_ag_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_date', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_biomass', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_crop_v', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_total_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_potential_tr', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_n_stress'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_crop |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_crop'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['3'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| description | ['Cycles water file'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['dat'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_plant_evap', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_runoff', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_irrigation', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_res_evap', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_snow_sub', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_drainage', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_date', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_transpiration', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_soil_evap', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_swc', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_infiltration'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_water |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_water'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['8'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| description | ['The summary file provides a summarized output of total |\n",
+ "| | C inputs over the duration of the simulation and average |\n",
+ "| | annual rates for N cycling processes.'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['dat'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_res_c_input', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_init_prof_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_no3_leach', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_n_immob', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_c_input', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_nh3_volatil', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_soil_c_chg/yr', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_nh4_leach', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_retained_res', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_tot_n2o_emi', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_no3_denit', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_final_prof_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_net_n_min', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_resp_soil_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_produced_root', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_gross_n_min', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_n2o_fr_nit', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_humified_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_prof_c_diff', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_resp_res_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_n2o_fr_deni', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_nh4_nitrif'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_summary |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_summary'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['6'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| description | ['The season.dat file provides information about each |\n",
+ "| | crop harvest.'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['dat'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_root_biomass', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_actual_tr', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_n_in_harvest', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_cum._n_stress', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_crop_v', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_forage_yield', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_total_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_n_in_residue', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_grain_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_n_concn_forage', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_potential_tr', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_total_biomass', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_harvest_index', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_ag_residue', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_forage_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_date', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_grain_yield', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_soil_evapr'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_season |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_season'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['5'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| description | ['Cycles season configuration file'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['txt'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_outputs |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_outputs'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['9'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| description | ['Nitrogen file. Results in this file are for the sum of |\n",
+ "| | all layers in the soil profile, including surface |\n",
+ "| | residues.'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['dat'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_n2o_from_nitrif', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_n2o_from_denit', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_org_soil_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_prof_soil_no3', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_prof_soil_nh4', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_nh4_leaching', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_nh4_nitrificat', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_no3_leaching', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_no3_denitrif', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_immobilization', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_nh4_volatiliz', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_date', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_net_mineraliz', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_mineralization'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_nitrogen |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_nitrogen'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['4'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "\n",
+ "\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+===================+==========================================================+\n",
+ "| description | ['Results in this file are for the sum of all layers in |\n",
+ "| | the soil profile, including surface residues'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['dat'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_res_c_decomp', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_humified_c2', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_final_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_res_biomass_in', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_c_diff', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_respired_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_init_c_mass', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_c_decomp', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_biomass_in', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_year'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_soilProfi |\n",
+ "| | le |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_soilProfile'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['1'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| description | ['Cycles crop output file'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['dat'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_n_fixation', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_ag_biomass', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_thermal_time', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_stage', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_n_added', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_frac_intercep', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_ag_n_concn', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_cum._biomass', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_water_stress', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_ag_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_date', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_biomass', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_crop_v', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_total_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_potential_tr', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_n_stress'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_crop |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_crop'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['3'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| description | ['Cycles water file'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['dat'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_plant_evap', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_runoff', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_irrigation', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_res_evap', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_snow_sub', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_drainage', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_date', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_transpiration', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_soil_evap', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_swc', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_infiltration'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_water |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_water'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['8'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| description | ['The summary file provides a summarized output of total |\n",
+ "| | C inputs over the duration of the simulation and average |\n",
+ "| | annual rates for N cycling processes.'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['dat'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_res_c_input', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_init_prof_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_no3_leach', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_n_immob', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_c_input', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_nh3_volatil', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_soil_c_chg/yr', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_nh4_leach', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_retained_res', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_tot_n2o_emi', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_no3_denit', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_final_prof_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_net_n_min', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_resp_soil_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_produced_root', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_gross_n_min', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_n2o_fr_nit', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_humified_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_prof_c_diff', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_resp_res_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_n2o_fr_deni', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_nh4_nitrif'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_summary |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_summary'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['6'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| description | ['The season.dat file provides information about each |\n",
+ "| | crop harvest.'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['dat'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_root_biomass', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_actual_tr', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_n_in_harvest', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_cum._n_stress', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_crop_v', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_forage_yield', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_total_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_n_in_residue', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_grain_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_n_concn_forage', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_potential_tr', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_total_biomass', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_harvest_index', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_ag_residue', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_forage_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_date', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_grain_yield', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_soil_evapr'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_season |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_season'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['5'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| description | ['Cycles season configuration file'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['txt'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_outputs |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_outputs'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['9'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| description | ['Nitrogen file. Results in this file are for the sum of |\n",
+ "| | all layers in the soil profile, including surface |\n",
+ "| | residues.'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['dat'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_n2o_from_nitrif', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_n2o_from_denit', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_org_soil_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_prof_soil_no3', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_prof_soil_nh4', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_nh4_leaching', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_nh4_nitrificat', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_no3_leaching', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_no3_denitrif', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_immobilization', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_nh4_volatiliz', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_date', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_net_mineraliz', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_mineralization'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_nitrogen |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_nitrogen'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['4'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| description | ['Cycles annual SOM file. This file provides annualized |\n",
+ "| | measurements of the carbon concentration and saturation |\n",
+ "| | ratio by soil layer. One column will be created for each |\n",
+ "| | layer in the soil profile for the variables where the |\n",
+ "| | column heading indicates LAYER 1..x'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['dat'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_c_sat._ratio', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_thickness', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_bulk_density', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_year', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_soil_c'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_somF |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_som'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['2'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "\n",
+ "\n"
+ ]
+ },
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "+-------------------+----------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+===================+==========================================================+\n",
+ "| description | ['Results in this file are for the sum of all layers in |\n",
+ "| | the soil profile, including surface residues'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['dat'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_res_c_decomp', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_humified_c2', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_final_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_res_biomass_in', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_c_diff', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_respired_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_init_c_mass', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_c_decomp', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_biomass_in', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_year'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_soilProfi |\n",
+ "| | le |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_soilProfile'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['1'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| description | ['Cycles crop output file'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['dat'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_n_fixation', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_ag_biomass', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_thermal_time', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_stage', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_n_added', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_frac_intercep', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_ag_n_concn', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_cum._biomass', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_water_stress', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_ag_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_date', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_biomass', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_crop_v', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_total_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_potential_tr', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_n_stress'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_crop |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_crop'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['3'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| description | ['Cycles water file'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['dat'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_plant_evap', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_runoff', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_irrigation', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_res_evap', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_snow_sub', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_drainage', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_date', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_transpiration', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_soil_evap', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_swc', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_infiltration'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_water |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_water'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['8'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| description | ['The summary file provides a summarized output of total |\n",
+ "| | C inputs over the duration of the simulation and average |\n",
+ "| | annual rates for N cycling processes.'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['dat'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_res_c_input', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_init_prof_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_no3_leach', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_n_immob', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_c_input', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_nh3_volatil', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_soil_c_chg/yr', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_nh4_leach', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_retained_res', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_tot_n2o_emi', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_no3_denit', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_final_prof_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_net_n_min', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_resp_soil_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_produced_root', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_gross_n_min', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_n2o_fr_nit', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_humified_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_prof_c_diff', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_resp_res_c', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_n2o_fr_deni', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_nh4_nitrif'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_summary |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_summary'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['6'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| description | ['The season.dat file provides information about each |\n",
+ "| | crop harvest.'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['dat'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_root_biomass', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_actual_tr', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_n_in_harvest', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_cum._n_stress', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_crop_v', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_forage_yield', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_total_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_n_in_residue', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_grain_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_n_concn_forage', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_potential_tr', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_total_biomass', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_harvest_index', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_ag_residue', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_forage_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_date', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_grain_yield', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_soil_evapr'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_season |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_season'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['5'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| description | ['Cycles season configuration file'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['txt'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_outputs |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_outputs'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['9'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| description | ['Nitrogen file. Results in this file are for the sum of |\n",
+ "| | all layers in the soil profile, including surface |\n",
+ "| | residues.'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['dat'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_n2o_from_nitrif', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_n2o_from_denit', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_org_soil_n', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_prof_soil_no3', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_prof_soil_nh4', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_nh4_leaching', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_nh4_nitrificat', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_no3_leaching', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_no3_denitrif', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_immobilization', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_nh4_volatiliz', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_date', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_net_mineraliz', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_mineralization'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_nitrogen |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_nitrogen'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['4'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| description | ['Cycles annual SOM file. This file provides annualized |\n",
+ "| | measurements of the carbon concentration and saturation |\n",
+ "| | ratio by soil layer. One column will be created for each |\n",
+ "| | layer in the soil profile for the variables where the |\n",
+ "| | column heading indicates LAYER 1..x'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['dat'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_c_sat._ratio', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_thickness', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_bulk_density', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_year', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_soil_c'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_somF |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_som'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['2'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| description | ['Cycles weather output file'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasDimensionality | ['0'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasFormat | ['dat'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| hasPresentation | ['https://w3id.org/okn/i/mint/cycles_min_tmp', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_date', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_max_tmp', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_precipitation', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_tmp', |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_reference_et'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_weatherOu |\n",
+ "| | tput |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| label | ['cycles_weatherOutput'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "| position | ['7'] |\n",
+ "+-------------------+----------------------------------------------------------+\n",
+ "\n",
+ "\n"
+ ]
+ }
+ ],
+ "source": [
+ "output = resource.has_output\n",
+ "print_resources(output)"
+ ]
+ }
+ ],
+ "metadata": {
+ "kernelspec": {
+ "display_name": "Python 3",
+ "language": "python",
+ "name": "python3"
+ },
+ "language_info": {
+ "codemirror_mode": {
+ "name": "ipython",
+ "version": 3
+ },
+ "file_extension": ".py",
+ "mimetype": "text/x-python",
+ "name": "python",
+ "nbconvert_exporter": "python",
+ "pygments_lexer": "ipython3",
+ "version": "3.7.5"
+ }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 2
+}
diff --git a/docs/notebooks/modelcatalog/quickstart.ipynb b/docs/notebooks/modelcatalog/quickstart.ipynb
new file mode 100644
index 0000000..3b61f99
--- /dev/null
+++ b/docs/notebooks/modelcatalog/quickstart.ipynb
@@ -0,0 +1,482 @@
+{
+ "cells": [
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "## MINT Model Catalog API client\n",
+ "\n",
+ "This notebook shows how interact with the MINT Model catalog using the MINT Model Catalog API client.\n",
+ "\n",
+ "For more information about this client: https://github.com/mintproject/MINT-ModelCatalogAPI-client\n",
+ "You can submit issues at https://github.com/mintproject/MINT-ModelCatalogIngestionAPI/issues"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "### First steps\n",
+ "\n",
+ "You must import the required modules and obtain the default configuration to interact with the API"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 103,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "from __future__ import print_function\n",
+ "import time\n",
+ "import modelcatalog\n",
+ "from modelcatalog.rest import ApiException\n",
+ "from pprint import pprint\n",
+ "import json\n",
+ "import ast\n",
+ "from pprint import pprint\n",
+ "import texttable as tt\n",
+ "\n",
+ "configuration = modelcatalog.Configuration()"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 106,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "def print_data_property_table(resource):\n",
+ " tab = tt.Texttable()\n",
+ " headings = ['Property', 'Value']\n",
+ " tab.header(headings)\n",
+ " for key, value in resource.to_dict().items():\n",
+ " if isinstance(value, dict) or key == \"type\":\n",
+ " continue\n",
+ " tab.add_row([key,value])\n",
+ " print(tab.draw())"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "## Authentication\n",
+ "### Why do you need authentication?\n",
+ "\n",
+ "You have your own workspace to store your models. So, you must authenticate to modify your models."
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "### Log in\n",
+ "\n",
+ "After, we must login in to the system. We can login using the method `api_instance.login_user(username, password)`. This method returns the access token and you must save the token in the configuration variable\n",
+ "```\n",
+ " configuration.access_token = api_instance.login_user(username, password)\n",
+ "```"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 32,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "# create an instance of the API class\n",
+ "api_instance = modelcatalog.DefaultApi()\n",
+ "username = 'mint@isi.edu' # str | The user name for login"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "### Yay!\n",
+ "Congrats! You can create new models!"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "## Model Configuration\n",
+ "\n",
+ "A model may be configured in different ways depending on the data that is avaialble. For example, if topological information is available, a groundwater model may use it to produce a better estimation of the water budget of an aquifer. A model configuration represents a unique setting of inputs and outputs of a given model designed for a particular functionality.\n",
+ "\n",
+ "https://mintproject.github.io/Mint-ModelCatalog-Ontology/modelCatalog/release/0.4.0/index-en.html#ModelConfiguration|\n",
+ "\n"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "### List model configurations\n",
+ "\n",
+ "\n",
+ "You can list your model configurations using the method `api_instance.get_model_configurations(username=username)` or you can list our parameters using the method `api_instance.get_model_configurations()` "
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 75,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "'Number of model configurations available: 101'\n"
+ ]
+ }
+ ],
+ "source": [
+ "api_instance = modelcatalog.ModelConfigurationApi()\n",
+ "try:\n",
+ " # List modelconfiguration\n",
+ " model_configurations = api_instance.modelconfigurations_get(username=username)\n",
+ " pprint(\"Number of model configurations available: {}\".format(len(model_configurations)))\n",
+ "except ApiException as e:\n",
+ " print(\"Exception when calling ModelconfigurationApi->get_model_configurations: %s\\n\" % e)\n",
+ " "
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "### Get model configuration\n",
+ "\n",
+ "You can get a model configuration by the name."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 96,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "api_instance = modelcatalog.ModelConfigurationApi(modelcatalog.ApiClient(configuration))"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 97,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "def print_id_resources(resources):\n",
+ " for resource in resources:\n",
+ " print(resource['id'])"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 98,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "Inputs\n",
+ "https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_soil\n",
+ "https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_crops\n",
+ "https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_weather\n",
+ "Outputs\n",
+ "https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_soilProfile\n",
+ "https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_crop\n",
+ "https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_water\n",
+ "https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_summary\n",
+ "https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_season\n",
+ "https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_outputs\n",
+ "https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_nitrogen\n",
+ "https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_somF\n",
+ "https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_weatherOutput\n",
+ "Parameters\n",
+ "https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_weed_fraction\n",
+ "https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_crop_name\n",
+ "https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_end_year\n",
+ "https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_fertilizer_rate\n",
+ "https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_start_year\n",
+ "https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_end_planting_day\n",
+ "https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_start_planting_day\n",
+ "https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_use_forcing\n"
+ ]
+ }
+ ],
+ "source": [
+ "resource_id='cycles-0.9.4-alpha'\n",
+ "try:\n",
+ " # Get modelconfiguration\n",
+ " api_response = api_instance.modelconfigurations_id_get(resource_id, username=username)\n",
+ " model_configuration = api_response\n",
+ "except ApiException as e:\n",
+ " print(\"Exception when calling ModelconfigurationApi->get_model_configuraton: %s\\n\" % e)\n",
+ "\n",
+ "#Print the basic information\n",
+ "print(\"Inputs\")\n",
+ "print_id_resources(api_response.has_input)\n",
+ "\n",
+ "print(\"Outputs\")\n",
+ "print_id_resources(api_response.has_output)\n",
+ "\n",
+ "print(\"Parameters\")\n",
+ "print_id_resources(api_response.has_parameter)\n"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "### Obtain the parameters of a model configuration\n",
+ "\n",
+ "If you want more information about the parameters of the model configuration. You can obtain the information using the method `api_instance.get_parameters_by_modelconfiguration(name)``\n"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 112,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "+----------------------------+-------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+============================+=================================================+\n",
+ "| has_default_value | ['0.05'] |\n",
+ "+----------------------------+-------------------------------------------------+\n",
+ "| has_maximum_accepted_value | ['2'] |\n",
+ "+----------------------------+-------------------------------------------------+\n",
+ "| has_data_type | ['float'] |\n",
+ "+----------------------------+-------------------------------------------------+\n",
+ "| description | ['Areal fraction of weed: 0.05 is low, 0.25 is |\n",
+ "| | moderate, 1 is high, and 2 is the maximum |\n",
+ "| | (after 2 there will be no response from the |\n",
+ "| | model)'] |\n",
+ "+----------------------------+-------------------------------------------------+\n",
+ "| label | ['weed_fraction'] |\n",
+ "+----------------------------+-------------------------------------------------+\n",
+ "| has_minimum_accepted_value | ['0'] |\n",
+ "+----------------------------+-------------------------------------------------+\n",
+ "| adjusts_variable | [{'id': |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_fraction', |\n",
+ "| | 'label': ['FRACTION'], 'type': ['Variable', |\n",
+ "| | 'VariablePresentation']}] |\n",
+ "+----------------------------+-------------------------------------------------+\n",
+ "| position | [7] |\n",
+ "+----------------------------+-------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_ |\n",
+ "| | weed_fraction |\n",
+ "+----------------------------+-------------------------------------------------+\n",
+ "| uses_unit | [{'id': 'https://w3id.org/okn/i/mint/%25', |\n",
+ "| | 'label': ['%'], 'type': |\n",
+ "| | 'http://qudt.org/1.1/schema/qudt#Unit'}] |\n",
+ "+----------------------------+-------------------------------------------------+\n"
+ ]
+ }
+ ],
+ "source": [
+ "# create an instance of the API class\n",
+ "parameter_id='cycles-0.9.4-alpha_weed_fraction'\n",
+ "api_instance = modelcatalog.ParameterApi()\n",
+ "try:\n",
+ " # List all Parameter entities\n",
+ " api_response = api_instance.parameters_id_get(parameter_id, username=username)\n",
+ " print_data_property_table(api_response)\n",
+ "except ApiException as e:\n",
+ " print(\"Exception when calling ParameterApi->parameters_get: %s\\n\" % e)"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "### Obtain the inputs of a model configuration\n",
+ "\n",
+ "If you want more information about the inputs of the model configuration. You can obtain the information using the method `api_instance.get_inputs_by_modelconfiguration(name)``\n"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 116,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "+--------------------+---------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+====================+=========================================================+\n",
+ "| has_dimensionality | [0] |\n",
+ "+--------------------+---------------------------------------------------------+\n",
+ "| has_format | ['dat'] |\n",
+ "+--------------------+---------------------------------------------------------+\n",
+ "| description | ['Results in this file are for the sum of all layers in |\n",
+ "| | the soil profile, including surface residues'] |\n",
+ "+--------------------+---------------------------------------------------------+\n",
+ "| has_presentation | [{'label': ['RES C DECOMP'], 'type': |\n",
+ "| | ['VariablePresentation'], 'id': |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_res_c_decomp'}, |\n",
+ "| | {'label': ['HUMIFIED C'], 'type': |\n",
+ "| | ['VariablePresentation'], 'id': |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_humified_c2'}, |\n",
+ "| | {'label': ['FINAL C'], 'type': |\n",
+ "| | ['VariablePresentation'], 'id': |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_final_c'}, |\n",
+ "| | {'label': ['RES BIOMASS IN'], 'type': |\n",
+ "| | ['VariablePresentation'], 'id': |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_res_biomass_in'}, |\n",
+ "| | {'label': ['YEAR'], 'type': ['VariablePresentation'], |\n",
+ "| | 'id': 'https://w3id.org/okn/i/mint/cycles_year'}, |\n",
+ "| | {'label': ['C DIFF'], 'type': ['VariablePresentation'], |\n",
+ "| | 'id': 'https://w3id.org/okn/i/mint/cycles_c_diff'}, |\n",
+ "| | {'label': ['RESPIRED C'], 'type': |\n",
+ "| | ['VariablePresentation'], 'id': |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_respired_c'}, |\n",
+ "| | {'label': ['INIT C MASS'], 'type': |\n",
+ "| | ['VariablePresentation'], 'id': |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_init_c_mass'}, |\n",
+ "| | {'label': ['ROOT C DECOMP'], 'type': |\n",
+ "| | ['VariablePresentation'], 'id': |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_c_decomp'}, |\n",
+ "| | {'label': ['ROOT BIOMASS IN'], 'type': |\n",
+ "| | ['VariablePresentation'], 'id': |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_root_biomass_in'}] |\n",
+ "+--------------------+---------------------------------------------------------+\n",
+ "| position | [1] |\n",
+ "+--------------------+---------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_soilProf |\n",
+ "| | ile |\n",
+ "+--------------------+---------------------------------------------------------+\n",
+ "| label | ['cycles_soilProfile'] |\n",
+ "+--------------------+---------------------------------------------------------+\n"
+ ]
+ }
+ ],
+ "source": [
+ "api_instance = modelcatalog.DatasetSpecificationApi()\n",
+ "resource_id = 'cycles-0.9.4-alpha_soilProfile' # str | The ID of the resource\n",
+ "\n",
+ "try:\n",
+ " # Get a DatasetSpecification\n",
+ " api_response = api_instance.datasetspecifications_id_get(resource_id, username=username)\n",
+ " print_data_property_table(api_response)\n",
+ "except ApiException as e:\n",
+ " print(\"Exception when calling DatasetSpecificationApi->datasetspecifications_id_get: %s\\n\" % e)"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "### Obtain the outpus of a model configuration\n",
+ "\n",
+ "If you want more information about the inputs of the model configuration. You can obtain the information using the method `api_instance.get_outputs_by_modelconfiguration(name)``\n"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 117,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "+--------------------+---------------------------------------------------------+\n",
+ "| Property | Value |\n",
+ "+====================+=========================================================+\n",
+ "| has_dimensionality | [0] |\n",
+ "+--------------------+---------------------------------------------------------+\n",
+ "| has_format | ['dat'] |\n",
+ "+--------------------+---------------------------------------------------------+\n",
+ "| description | ['Cycles weather output file'] |\n",
+ "+--------------------+---------------------------------------------------------+\n",
+ "| has_presentation | [{'label': ['MIN TMP'], 'type': |\n",
+ "| | ['VariablePresentation'], 'id': |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_min_tmp'}, |\n",
+ "| | {'label': ['DATE'], 'type': ['VariablePresentation'], |\n",
+ "| | 'id': 'https://w3id.org/okn/i/mint/cycles_date'}, |\n",
+ "| | {'label': ['MAX TMP'], 'type': |\n",
+ "| | ['VariablePresentation'], 'id': |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_max_tmp'}, |\n",
+ "| | {'label': ['PRECIPITATION'], 'type': |\n",
+ "| | ['VariablePresentation'], 'id': |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_precipitation'}, |\n",
+ "| | {'label': ['AVG TMP'], 'type': |\n",
+ "| | ['VariablePresentation'], 'id': |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_avg_tmp'}, |\n",
+ "| | {'label': ['REFERENCE ET'], 'type': |\n",
+ "| | ['VariablePresentation'], 'id': |\n",
+ "| | 'https://w3id.org/okn/i/mint/cycles_reference_et'}] |\n",
+ "+--------------------+---------------------------------------------------------+\n",
+ "| position | [7] |\n",
+ "+--------------------+---------------------------------------------------------+\n",
+ "| id | https://w3id.org/okn/i/mint/cycles-0.9.4-alpha_weatherO |\n",
+ "| | utput |\n",
+ "+--------------------+---------------------------------------------------------+\n",
+ "| label | ['cycles_weatherOutput'] |\n",
+ "+--------------------+---------------------------------------------------------+\n"
+ ]
+ }
+ ],
+ "source": [
+ "api_instance = modelcatalog.DatasetSpecificationApi()\n",
+ "resource_id = 'cycles-0.9.4-alpha_weatherOutput' # str | The ID of the resource\n",
+ "\n",
+ "try:\n",
+ " # Get a DatasetSpecification\n",
+ " api_response = api_instance.datasetspecifications_id_get(resource_id, username=username)\n",
+ " print_data_property_table(api_response)\n",
+ "except ApiException as e:\n",
+ " print(\"Exception when calling DatasetSpecificationApi->datasetspecifications_id_get: %s\\n\" % e)"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "## Variable\n",
+ "\n",
+ "A model may be configured in different ways depending on the data that is avaialble. For example, if topological information is available, a groundwater model may use it to produce a better estimation of the water budget of an aquifer. A model configuration represents a unique setting of inputs and outputs of a given model designed for a particular functionality.\n",
+ "\n",
+ "https://mintproject.github.io/Mint-ModelCatalog-Ontology/modelCatalog/release/0.4.0/index-en.html#ModelConfiguration|\n"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "metadata": {},
+ "outputs": [],
+ "source": []
+ }
+ ],
+ "metadata": {
+ "kernelspec": {
+ "display_name": "Python 3",
+ "language": "python",
+ "name": "python3"
+ },
+ "language_info": {
+ "codemirror_mode": {
+ "name": "ipython",
+ "version": 3
+ },
+ "file_extension": ".py",
+ "mimetype": "text/x-python",
+ "name": "python",
+ "nbconvert_exporter": "python",
+ "pygments_lexer": "ipython3",
+ "version": "3.7.5"
+ }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 2
+}
diff --git a/docs/notebooks/modelcatalog/tools.py b/docs/notebooks/modelcatalog/tools.py
new file mode 100644
index 0000000..979f020
--- /dev/null
+++ b/docs/notebooks/modelcatalog/tools.py
@@ -0,0 +1,81 @@
+from pprint import pprint
+from tabulate import tabulate
+from IPython.display import HTML, display
+import texttable as tt
+
+#Method to print a resource as a table
+def create_table(resource, **karwgs):
+ if isinstance(resource, object) and not isinstance(resource, dict) :
+ try:
+ resource = resource.to_dict()
+ except:
+ pass
+
+ table = []
+ for key, value in resource.items():
+ if 'filter' in karwgs and key not in karwgs['filter']:
+ continue
+ if isinstance(value, dict) or key == "type":
+ continue
+ table.append([key,value])
+ return table
+
+def print_resource(resource, **karwgs):
+ tab = tt.Texttable()
+ headings = ['Property', 'Value']
+ tab.header(headings)
+ table = create_table(resource, **karwgs)
+ tab.add_rows(table, header=False)
+ print(tab.draw())
+
+def print_resources(resources, **karwgs):
+ tab = tt.Texttable()
+ headings = ['Property', 'Value']
+ tab.header(headings)
+ for resource in resources:
+ table = create_table(resource, **karwgs)
+ tab.add_rows(table, header=False)
+ print(tab.draw())
+ print("\n")
+
+
+# def print_resources(resources, **karwgs):
+# headings = ['Property', 'Value']
+
+# for resource in resources:
+# table = create_table(resource, **karwgs)
+# print(tabulate(table, headers=headings, tablefmt="github"))
+# print("\n")
+
+#Method to print a resource as a table
+# def create_table(resource, **karwgs):
+# if isinstance(resource, object) and not isinstance(resource, dict) :
+# try:
+# resource = resource.to_dict()
+# except:
+# pass
+
+# table = []
+# for key, value in resource.items():
+# if 'filter' in karwgs and key not in karwgs['filter']:
+# continue
+# if isinstance(value, dict) or key == "type":
+# continue
+# table.append([key,value])
+# return table
+
+# def print_resource(resource, **karwgs):
+# headings = ['Property', 'Value']
+# table = create_table(resource, **karwgs)
+# print(tabulate(table, headers=headings, tablefmt="github"))
+
+
+
+# def print_resources(resources, **karwgs):
+# headings = ['Property', 'Value']
+
+# for resource in resources:
+# table = create_table(resource, **karwgs)
+# print(tabulate(table, headers=headings, tablefmt="github"))
+# print("\n")
+
diff --git a/docs/notebooks/solutioncatalog/using_the_mint_results_database.ipynb b/docs/notebooks/solutioncatalog/using_the_mint_results_database.ipynb
new file mode 100644
index 0000000..bfa6a48
--- /dev/null
+++ b/docs/notebooks/solutioncatalog/using_the_mint_results_database.ipynb
@@ -0,0 +1,3514 @@
+{
+ "cells": [
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "![\"Example\"](\"http://mint-project.info/assets/images/mint-logo-vertical.png\"){kind=logo}
\n",
+ "\n",
+ "# Querying the MINT execution database\n",
+ "\n",
+ "This notebook demos how to query the MINT results database.\n",
+ "\n",
+ "**Table of contents**\n",
+ "* [Navigating the database](#navigating)\n",
+ " - [Execution metadata](#exe)\n",
+ " - [Model execution outputs](#out)\n",
+ "* [Example Query](#example)\n",
+ "\n",
+ "Import the packages and connect to the database."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 4,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "import pandas as pd\n",
+ "from sqlalchemy import create_engine\n",
+ "from sqlalchemy import inspect\n",
+ "import sqlalchemy as sqla\n",
+ "import numpy as np\n",
+ "import csv\n",
+ "import json"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 8,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "with open('DATABASES.json') as json_file:\n",
+ " DATABASES = json.load(json_file)\n",
+ "\n",
+ "# choose the database to use\n",
+ "db = DATABASES['devingestion']\n",
+ "\n",
+ "# construct an engine connection string\n",
+ "engine_string = \"postgresql+psycopg2://{user}:{password}@{host}:{port}/{database}\".format(\n",
+ " user = db['USER'],\n",
+ " password = db['PASSWORD'],\n",
+ " host = db['HOST'],\n",
+ " port = db['PORT'],\n",
+ " database = db['NAME'],\n",
+ ")"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 9,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "# create sqlalchemy engine\n",
+ "engine = create_engine(engine_string)\n",
+ "connection = engine.connect()\n",
+ "metadata = sqla.MetaData()"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "## Navigating the database \n",
+ "\n",
+ "Below is a list of currently available tables in the database:"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 4,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "threads\n",
+ "threads_inputs\n",
+ "threads_input_column\n",
+ "cycles_0_9_4_alpha_advanced_pongo_weather_cycles_season\n",
+ "threads_output_table\n",
+ "cycles_0_9_4_alpha_advanced_pongo_weather_runs\n",
+ "cycles_0_9_4_alpha_advanced_pongo_cycles_season\n",
+ "cycles_0_9_4_alpha_advanced_pongo_runs\n",
+ "cycles_0_9_4_alpha_cycles_season\n",
+ "modflow_2005_cfg_runs\n",
+ "pihm_v4_1_0_runs\n",
+ "cycles_0_9_4_alpha_runs\n",
+ "economicgambella_v6_1_economic_land_use\n",
+ "economicgambella_v6_1_runs\n",
+ "pihm_v4_1_0_surf_images\n",
+ "pihm_v4_1_0_gw_images\n",
+ "hand_v1_simple_hand_image\n",
+ "hand_v1_simple_runs\n",
+ "fsi_1_0_simple_fsi_movie\n",
+ "fsi_1_0_simple_runs\n",
+ "cycles_0_9_4_alpha_cycles_weatheroutput\n",
+ "cycles_0_9_4_alpha_cycles_summary\n",
+ "cycles_0_9_4_alpha_cycles_soilprofile\n",
+ "cycles_0_9_4_alpha_cycles_nitrogen\n",
+ "cycles_0_9_4_alpha_cycles_water\n",
+ "cycles_0_9_4_alpha_cycles_crop\n",
+ "cycles_0_9_4_alpha_cycles_som\n",
+ "topoflow_cfg_simple_runs\n",
+ "topoflow_cfg_simple_topo_movie\n",
+ "cycles_0_9_4_alpha_collection_cycles_season\n",
+ "cycles_0_9_4_alpha_collection_runs\n",
+ "topoflow36_2_1_0_topo_movie\n",
+ "topoflow36_2_1_0_runs\n",
+ "economic_v7_economic_land_use\n",
+ "economic_v7_calibration_output\n",
+ "economic_v7_runs\n",
+ "cycles_0_10_2_alpha_collection_cycles_season\n",
+ "cycles_0_10_2_alpha_collection_cycles_soilprofile\n",
+ "cycles_0_10_2_alpha_collection_cycles_summary\n",
+ "cycles_0_10_2_alpha_collection_cycles_som\n",
+ "cycles_0_10_2_alpha_collection_runs\n",
+ "economic_v6_1_economic_land_use\n",
+ "economic_v6_1_calibration_output\n",
+ "economic_v6_1_runs\n"
+ ]
+ }
+ ],
+ "source": [
+ "table_names = engine.table_names()\n",
+ "for item in table_names:\n",
+ " print(item)"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "### Execution metadata \n",
+ "\n",
+ "The threads, threads_inputs, thread_input_column, and threads_output_table contains general information about the execution, organized as modeling thread. The tables are related using the threadid as the key.\n",
+ "\n",
+ "In MINT, a modeling thread is used to explore different initial conditions, models, input data, or interventions. Each thread can consists of several executions. For instance, a point model executed at different location would result in multiple execution (and therefore mint_runid). Thread IDs are unique and can be used to relate provenance information, inputs and outputs table automatically. \n",
+ "\n",
+ "#### Threads table\n",
+ "\n",
+ "This table contains the information about provenance, which describes the execution traces of the executions in MINT. The metadata associated with the provenance trace is given in a nested dictionaries. \n",
+ "\n",
+ "Let's print out the available column and dump the first 10 elements of the table into a dataframe."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 5,
+ "metadata": {
+ "scrolled": false
+ },
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "threadid\n",
+ "metadata\n",
+ "category\n"
+ ]
+ }
+ ],
+ "source": [
+ "inspector = inspect(engine)\n",
+ "z = inspector.get_columns('threads')\n",
+ "for item in z:\n",
+ " print(item['name'])"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 6,
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "text/html": [
+ "| \n", + " | threadid | \n", + "metadata | \n", + "category | \n", + "
|---|---|---|---|
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| \n", + " | threadid | \n", + "id | \n", + "url | \n", + "start_date | \n", + "end_date | \n", + "spatial_type | \n", + "x | \n", + "y | \n", + "x_max | \n", + "x_min | \n", + "y_max | \n", + "y_min | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", + "zLQnesC9wps2h5ZdYpMi | \n", + "crops.crop | \n", + "https://publisher.mint.isi.edu/i5gwq/crops.crop | \n", + "None | \n", + "None | \n", + "None | \n", + "NaN | \n", + "NaN | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "
| 1 | \n", + "zLQnesC9wps2h5ZdYpMi | \n", + "pongo.soil | \n", + "https://publisher.mint.isi.edu/OIvRW/pongo.soil | \n", + "None | \n", + "None | \n", + "None | \n", + "NaN | \n", + "NaN | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "
| 2 | \n", + "zLQnesC9wps2h5ZdYpMi | \n", + "met9.12Nx27.62E.weather | \n", + "https://publisher.mint.isi.edu/kkA2u/met9.12Nx... | \n", + "None | \n", + "None | \n", + "Point | \n", + "27.62 | \n", + "9.12 | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "
| 3 | \n", + "gwO5l7SeXmyyKWFzv9X0 | \n", + "cyclesdata.csv | \n", + "https://publisher.mint.isi.edu/eTdtX/cyclesdat... | \n", + "None | \n", + "None | \n", + "None | \n", + "NaN | \n", + "NaN | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "
| 4 | \n", + "gwO5l7SeXmyyKWFzv9X0 | \n", + "calibdata.csv | \n", + "https://publisher.mint.isi.edu/14mJfs/calibdat... | \n", + "None | \n", + "None | \n", + "None | \n", + "NaN | \n", + "NaN | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "
| 5 | \n", + "gwO5l7SeXmyyKWFzv9X0 | \n", + "pongo-price.csv | \n", + "https://data.mint.isi.edu/files/economic/pongo... | \n", + "None | \n", + "None | \n", + "None | \n", + "NaN | \n", + "NaN | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "
| 6 | \n", + "gwO5l7SeXmyyKWFzv9X0 | \n", + "pongo-productioncost.csv | \n", + "https://data.mint.isi.edu/files/economic/pongo... | \n", + "None | \n", + "None | \n", + "None | \n", + "NaN | \n", + "NaN | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "
| 7 | \n", + "BLKIjJato4SUDJAeWmBg | \n", + "crops.crop | \n", + "https://publisher.mint.isi.edu/i5gwq/crops.crop | \n", + "None | \n", + "None | \n", + "None | \n", + "NaN | \n", + "NaN | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "
| 8 | \n", + "BLKIjJato4SUDJAeWmBg | \n", + "pongo.soil | \n", + "https://publisher.mint.isi.edu/OIvRW/pongo.soil | \n", + "None | \n", + "None | \n", + "None | \n", + "NaN | \n", + "NaN | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "
| 9 | \n", + "BLKIjJato4SUDJAeWmBg | \n", + "met9.12Nx27.62E.weather | \n", + "https://publisher.mint.isi.edu/kkA2u/met9.12Nx... | \n", + "None | \n", + "None | \n", + "Point | \n", + "27.62 | \n", + "9.12 | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "
| \n", + " | threadid | \n", + "modelid | \n", + "table_schema | \n", + "output_table_name | \n", + "ingestion_date | \n", + "
|---|---|---|---|---|---|
| 0 | \n", + "PvjIvVMa4ELIQQcDYgIM | \n", + "https://w3id.org/okn/i/mint/pihm-v4.1.0-beko-t... | \n", + "public | \n", + "pihm_v4_1_0_surf_images | \n", + "2019-11-26 13:43:50.404903 | \n", + "
| 1 | \n", + "53CKtJZb6U8rwdjJF4f6 | \n", + "https://w3id.org/okn/i/mint/cycles-0.9.4-alpha... | \n", + "public | \n", + "cycles_0_9_4_alpha_advanced_pongo_cycles_season | \n", + "2019-10-18 23:30:02.060834 | \n", + "
| 2 | \n", + "YgXRKKgAjCixdcbVUOar | \n", + "https://w3id.org/okn/i/mint/cycles-0.9.4-alpha... | \n", + "public | \n", + "cycles_0_9_4_alpha_advanced_pongo_weather_cycl... | \n", + "2019-10-18 23:36:11.789881 | \n", + "
| 3 | \n", + "vk5GDQ6Y7Xd1jRIyTgTx | \n", + "https://w3id.org/okn/i/mint/economic-v6.1_adva... | \n", + "public | \n", + "economic_v6_1_advanced_pongo_economic_land_use | \n", + "2019-10-20 22:33:46.079579 | \n", + "
| 4 | \n", + "Ghpr0RMeByd7vCiJ9O5R | \n", + "https://w3id.org/okn/i/mint/economic-v6.1_adva... | \n", + "public | \n", + "economic_v6_1_advanced_pongo_economic_land_use | \n", + "2019-10-20 22:38:52.232468 | \n", + "
| 5 | \n", + "b2oR7iGkFEzVgimbNZFO | \n", + "https://w3id.org/okn/i/mint/cycles-0.9.4-alpha... | \n", + "public | \n", + "cycles_0_9_4_alpha_cycles_season | \n", + "2019-10-21 20:13:30.580806 | \n", + "
| 6 | \n", + "zLQnesC9wps2h5ZdYpMi | \n", + "https://w3id.org/okn/i/mint/cycles-0.9.4-alpha... | \n", + "public | \n", + "cycles_0_9_4_alpha_cycles_season | \n", + "2019-10-22 01:52:50.193797 | \n", + "
| 7 | \n", + "gwO5l7SeXmyyKWFzv9X0 | \n", + "https://w3id.org/okn/i/mint/economic-v6.1_adva... | \n", + "public | \n", + "economic_v6_1_economic_land_use | \n", + "2019-10-22 01:39:24.532745 | \n", + "
| 8 | \n", + "F9odlTVcnDy0WPDQkKi2 | \n", + "https://w3id.org/okn/i/mint/cycles-0.9.4-alpha... | \n", + "public | \n", + "cycles_0_9_4_alpha_cycles_season | \n", + "2019-10-22 01:46:17.761295 | \n", + "
| 9 | \n", + "BLKIjJato4SUDJAeWmBg | \n", + "https://w3id.org/okn/i/mint/cycles-0.9.4-alpha... | \n", + "public | \n", + "cycles_0_9_4_alpha_cycles_season | \n", + "2019-10-22 02:02:03.237047 | \n", + "
| \n", + " | threadid | \n", + "mint_runid | \n", + "cycles_crops | \n", + "cycles_soil | \n", + "cycles_weather | \n", + "crop_name | \n", + "end_planting_day | \n", + "end_year | \n", + "fertilizer_rate | \n", + "start_planting_day | \n", + "start_year | \n", + "use_forcing | \n", + "weed_fraction | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", + "b2oR7iGkFEzVgimbNZFO | \n", + "f36b9357b53915411cb44b64a66daae3 | \n", + "crops.crop | \n", + "pongo.soil | \n", + "000a3137-d9c2-5ab4-9f2f-b80f4257c063 | \n", + "Peanut | \n", + "149 | \n", + "2017 | \n", + "625.0 | \n", + "114 | \n", + "2000 | \n", + "False | \n", + "1.50 | \n", + "
| 1 | \n", + "b2oR7iGkFEzVgimbNZFO | \n", + "e00fa78d41e8b954e25466cf443c579e | \n", + "crops.crop | \n", + "pongo.soil | \n", + "000a3137-d9c2-5ab4-9f2f-b80f4257c063 | \n", + "Peanut | \n", + "149 | \n", + "2017 | \n", + "625.0 | \n", + "114 | \n", + "2000 | \n", + "False | \n", + "0.40 | \n", + "
| 2 | \n", + "b2oR7iGkFEzVgimbNZFO | \n", + "1527486e2a7432581b768d79a2514757 | \n", + "crops.crop | \n", + "pongo.soil | \n", + "000a3137-d9c2-5ab4-9f2f-b80f4257c063 | \n", + "Peanut | \n", + "149 | \n", + "2017 | \n", + "625.0 | \n", + "114 | \n", + "2000 | \n", + "False | \n", + "0.20 | \n", + "
| 3 | \n", + "b2oR7iGkFEzVgimbNZFO | \n", + "edaf6b771c8652638785d3f2c5505ce2 | \n", + "crops.crop | \n", + "pongo.soil | \n", + "000a3137-d9c2-5ab4-9f2f-b80f4257c063 | \n", + "Peanut | \n", + "149 | \n", + "2017 | \n", + "625.0 | \n", + "114 | \n", + "2000 | \n", + "False | \n", + "0.10 | \n", + "
| 4 | \n", + "b2oR7iGkFEzVgimbNZFO | \n", + "33f342f3dac6a7b33fa2bbe3bed33149 | \n", + "crops.crop | \n", + "pongo.soil | \n", + "000a3137-d9c2-5ab4-9f2f-b80f4257c063 | \n", + "Peanut | \n", + "149 | \n", + "2017 | \n", + "625.0 | \n", + "114 | \n", + "2000 | \n", + "False | \n", + "0.05 | \n", + "
| 5 | \n", + "b2oR7iGkFEzVgimbNZFO | \n", + "08829f42294e393b68d7ac557ed2db5d | \n", + "crops.crop | \n", + "pongo.soil | \n", + "000a3137-d9c2-5ab4-9f2f-b80f4257c063 | \n", + "Peanut | \n", + "149 | \n", + "2017 | \n", + "625.0 | \n", + "114 | \n", + "2000 | \n", + "False | \n", + "0.00 | \n", + "
| 6 | \n", + "b2oR7iGkFEzVgimbNZFO | \n", + "b2d1d61eb745ca8dfb92b7fe5681ed22 | \n", + "crops.crop | \n", + "pongo.soil | \n", + "000a3137-d9c2-5ab4-9f2f-b80f4257c063 | \n", + "Peanut | \n", + "149 | \n", + "2017 | \n", + "625.0 | \n", + "100 | \n", + "2000 | \n", + "False | \n", + "1.50 | \n", + "
| 7 | \n", + "b2oR7iGkFEzVgimbNZFO | \n", + "f1ccf9ee5e307c6edce2f53263f4c4d0 | \n", + "crops.crop | \n", + "pongo.soil | \n", + "000a3137-d9c2-5ab4-9f2f-b80f4257c063 | \n", + "Peanut | \n", + "149 | \n", + "2017 | \n", + "625.0 | \n", + "100 | \n", + "2000 | \n", + "False | \n", + "0.40 | \n", + "
| 8 | \n", + "b2oR7iGkFEzVgimbNZFO | \n", + "a641ba83e87b94e238c5d4636bb66cd2 | \n", + "crops.crop | \n", + "pongo.soil | \n", + "000a3137-d9c2-5ab4-9f2f-b80f4257c063 | \n", + "Peanut | \n", + "149 | \n", + "2017 | \n", + "625.0 | \n", + "100 | \n", + "2000 | \n", + "False | \n", + "0.20 | \n", + "
| 9 | \n", + "b2oR7iGkFEzVgimbNZFO | \n", + "4bb31e66ee86769c5155072f21e72783 | \n", + "crops.crop | \n", + "pongo.soil | \n", + "000a3137-d9c2-5ab4-9f2f-b80f4257c063 | \n", + "Peanut | \n", + "149 | \n", + "2017 | \n", + "625.0 | \n", + "100 | \n", + "2000 | \n", + "False | \n", + "0.10 | \n", + "
| \n", + " | threadid | \n", + "mint_runid | \n", + "date | \n", + "crop | \n", + "total_biomass | \n", + "root_biomass | \n", + "grain_yield | \n", + "forage_yield | \n", + "ag_residue | \n", + "harvest_index | \n", + "... | \n", + "actual_tr | \n", + "soil_evap | \n", + "total_n | \n", + "root_n | \n", + "grain_n | \n", + "forage_n | \n", + "cum__n_stress | \n", + "n_in_harvest | \n", + "n_in_residue | \n", + "n_concn_forage | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", + "b2oR7iGkFEzVgimbNZFO | \n", + "04d5863a5f8e630318e094b89eb8e9d8 | \n", + "2006-08-15 | \n", + "Peanut | \n", + "6.507528 | \n", + "0.800251 | \n", + "1.367745 | \n", + "3.471625 | \n", + "0.867906 | \n", + "0.239649 | \n", + "... | \n", + "199.631014 | \n", + "211.291937 | \n", + "0.150591 | \n", + "0.007979 | \n", + "0.057522 | \n", + "0.068072 | \n", + "0.0 | \n", + "125.594105 | \n", + "24.996698 | \n", + "1.960804 | \n", + "
| 1 | \n", + "b2oR7iGkFEzVgimbNZFO | \n", + "04d5863a5f8e630318e094b89eb8e9d8 | \n", + "2007-07-31 | \n", + "Peanut | \n", + "7.455461 | \n", + "0.943260 | \n", + "1.556306 | \n", + "3.964716 | \n", + "0.991179 | \n", + "0.238983 | \n", + "... | \n", + "239.227066 | \n", + "163.664792 | \n", + "0.164474 | \n", + "0.009412 | \n", + "0.062371 | \n", + "0.074152 | \n", + "0.0 | \n", + "136.523554 | \n", + "27.950411 | \n", + "1.870306 | \n", + "
| 2 | \n", + "b2oR7iGkFEzVgimbNZFO | \n", + "04d5863a5f8e630318e094b89eb8e9d8 | \n", + "2008-08-01 | \n", + "Peanut | \n", + "7.248837 | \n", + "0.911916 | \n", + "1.507459 | \n", + "3.863570 | \n", + "0.965893 | \n", + "0.237885 | \n", + "... | \n", + "227.593723 | \n", + "166.372500 | \n", + "0.162128 | \n", + "0.009101 | \n", + "0.061271 | \n", + "0.073404 | \n", + "0.0 | \n", + "134.675318 | \n", + "27.452254 | \n", + "1.899901 | \n", + "
| 3 | \n", + "b2oR7iGkFEzVgimbNZFO | \n", + "04d5863a5f8e630318e094b89eb8e9d8 | \n", + "2009-08-03 | \n", + "Peanut | \n", + "5.343741 | \n", + "0.646500 | \n", + "1.145029 | \n", + "2.841769 | \n", + "0.710442 | \n", + "0.243766 | \n", + "... | \n", + "188.054446 | \n", + "201.313468 | \n", + "0.123415 | \n", + "0.006447 | \n", + "0.047980 | \n", + "0.055191 | \n", + "0.0 | \n", + "103.170823 | \n", + "20.244674 | \n", + "1.942135 | \n", + "
| 4 | \n", + "b2oR7iGkFEzVgimbNZFO | \n", + "04d5863a5f8e630318e094b89eb8e9d8 | \n", + "2010-08-17 | \n", + "Peanut | \n", + "7.379032 | \n", + "0.915628 | \n", + "1.539761 | \n", + "3.938915 | \n", + "0.984729 | \n", + "0.238227 | \n", + "... | \n", + "224.079997 | \n", + "148.964033 | \n", + "0.164177 | \n", + "0.009127 | \n", + "0.062171 | \n", + "0.074304 | \n", + "0.0 | \n", + "136.474562 | \n", + "27.702638 | \n", + "1.886403 | \n", + "
| 5 | \n", + "b2oR7iGkFEzVgimbNZFO | \n", + "04d5863a5f8e630318e094b89eb8e9d8 | \n", + "2011-08-28 | \n", + "Peanut | \n", + "9.203341 | \n", + "1.107361 | \n", + "1.952527 | \n", + "4.914763 | \n", + "1.228691 | \n", + "0.241172 | \n", + "... | \n", + "309.513587 | \n", + "165.271782 | \n", + "0.188044 | \n", + "0.011043 | \n", + "0.071842 | \n", + "0.084127 | \n", + "0.0 | \n", + "155.968999 | \n", + "32.074582 | \n", + "1.711713 | \n", + "
| 6 | \n", + "b2oR7iGkFEzVgimbNZFO | \n", + "04d5863a5f8e630318e094b89eb8e9d8 | \n", + "2012-09-03 | \n", + "Peanut | \n", + "8.200779 | \n", + "1.015952 | \n", + "1.709658 | \n", + "4.380136 | \n", + "1.095034 | \n", + "0.237954 | \n", + "... | \n", + "239.971354 | \n", + "175.131616 | \n", + "0.173353 | \n", + "0.010129 | \n", + "0.065373 | \n", + "0.078281 | \n", + "0.0 | \n", + "143.654018 | \n", + "29.699189 | \n", + "1.787175 | \n", + "
| 7 | \n", + "b2oR7iGkFEzVgimbNZFO | \n", + "04d5863a5f8e630318e094b89eb8e9d8 | \n", + "2013-08-20 | \n", + "Peanut | \n", + "8.681602 | \n", + "1.095354 | \n", + "1.815442 | \n", + "4.616645 | \n", + "1.154161 | \n", + "0.239307 | \n", + "... | \n", + "294.952047 | \n", + "159.760081 | \n", + "0.179440 | \n", + "0.010931 | \n", + "0.067871 | \n", + "0.080510 | \n", + "0.0 | \n", + "148.380903 | \n", + "31.058685 | \n", + "1.743901 | \n", + "
| 8 | \n", + "b2oR7iGkFEzVgimbNZFO | \n", + "04d5863a5f8e630318e094b89eb8e9d8 | \n", + "2014-07-31 | \n", + "Peanut | \n", + "7.463221 | \n", + "0.884121 | \n", + "1.586870 | \n", + "3.993784 | \n", + "0.998446 | \n", + "0.241199 | \n", + "... | \n", + "275.901082 | \n", + "193.536196 | \n", + "0.161309 | \n", + "0.008822 | \n", + "0.061899 | \n", + "0.072470 | \n", + "0.0 | \n", + "134.369502 | \n", + "26.939957 | \n", + "1.814575 | \n", + "
| 9 | \n", + "b2oR7iGkFEzVgimbNZFO | \n", + "04d5863a5f8e630318e094b89eb8e9d8 | \n", + "2015-08-09 | \n", + "Peanut | \n", + "7.393377 | \n", + "0.902691 | \n", + "1.549261 | \n", + "3.953139 | \n", + "0.988285 | \n", + "0.238690 | \n", + "... | \n", + "301.056371 | \n", + "160.469367 | \n", + "0.162750 | \n", + "0.009000 | \n", + "0.061768 | \n", + "0.073585 | \n", + "0.0 | \n", + "135.353610 | \n", + "27.395921 | \n", + "1.861441 | \n", + "
10 rows × 21 columns
\n", + "| \n", + " | threadid | \n", + "mint_runid | \n", + "url | \n", + "
|---|---|---|---|
| 0 | \n", + "3jIm5oOQscQ14Tj3SM1b | \n", + "d0330c8c89982c78554eec38ba5a6773 | \n", + "https://ingestion.mint.isi.edu/data/aggregated... | \n", + "
| 1 | \n", + "3jIm5oOQscQ14Tj3SM1b | \n", + "9a94a97dfb11f5e76d7c26fcd12719d3 | \n", + "https://ingestion.mint.isi.edu/data/aggregated... | \n", + "
| 2 | \n", + "U2lQrX3YHzwPL213BNCZ | \n", + "70d36ee1e1361fc01cae36d1b5956d61 | \n", + "https://ingestion.mint.isi.edu/data/aggregated... | \n", + "
| 3 | \n", + "U2lQrX3YHzwPL213BNCZ | \n", + "078211d32c267277358cba7898f797cd | \n", + "https://ingestion.mint.isi.edu/data/aggregated... | \n", + "
| 4 | \n", + "cIbXu5eRJFae433i6uGa | \n", + "0b25c77956458a3c2dce612af56b7419 | \n", + "https://ingestion.mint.isi.edu/data/aggregated... | \n", + "
| 5 | \n", + "cIbXu5eRJFae433i6uGa | \n", + "fdb2c93fa7aa23f614c4903554618e92 | \n", + "https://ingestion.mint.isi.edu/data/aggregated... | \n", + "
| 6 | \n", + "LFb7bRAg3okZWpYtTM14 | \n", + "b0da961690a112094c4a0028bb6b8ef9 | \n", + "https://ingestion.mint.isi.edu/data/aggregated... | \n", + "
| 7 | \n", + "LFb7bRAg3okZWpYtTM14 | \n", + "25c7250ef0b5517ffbbde264250b5410 | \n", + "https://ingestion.mint.isi.edu/data/aggregated... | \n", + "
| 8 | \n", + "6zbIV0OSUxxbBoOlPufe | \n", + "31a23bd7171e01c521ac4230c6e0578f | \n", + "https://ingestion.mint.isi.edu/data/aggregated... | \n", + "
| 9 | \n", + "7WuXvRWbasOOup2fAWEn | \n", + "2683115789802e70781a725fa4c42f0b | \n", + "https://ingestion.mint.isi.edu/data/aggregated... | \n", + "
| \n", + " | threadid | \n", + "mint_runid | \n", + "cycles_crops | \n", + "cycles_soil | \n", + "cycles_weather | \n", + "crop_name | \n", + "end_planting_day | \n", + "end_year | \n", + "fertilizer_rate | \n", + "start_planting_day | \n", + "start_year | \n", + "use_forcing | \n", + "weed_fraction | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", + "BLKIjJato4SUDJAeWmBg | \n", + "6bd197ad3ecf0d96ab05a1045560353a | \n", + "crops.crop | \n", + "pongo.soil | \n", + "met9.12Nx27.62E.weather | \n", + "Maize | \n", + "149 | \n", + "2017 | \n", + "100.0 | \n", + "100 | \n", + "2017 | \n", + "False | \n", + "0.0 | \n", + "
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180 rows × 13 columns
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190 rows × 21 columns
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226 rows × 32 columns
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