_site.yml

name: "Mnemiopsis"
exclude: ["download", "libs", "output", "sessionInfo"]
output_dir: "."
navbar:
  title: "<em>Mnemiopsis leidyi</em>"
  right:
    - text: "Home"
      href: index.html
    - text: 'Experiment'
      href: experiment.html
    - text: 'Transcriptome'
      href: transcriptome.html
    - text: 'Quality Control'
      menu:
        - text: '8hpa Control First Pass'
          href: analysis8hpaAllR.html
        - text: '8hpa Control Second Pass'
          href: analysis8hpa5RR.html
        - text: '2hpa Control First Pass'
          href: analysis2hpaAllR.html
        - text: '2hpa Control Second Pass'
          href: analysis2hpa2RR.html
        - text: 'Stepwise Test'
          href: analysisStepwise.html
    - text: 'Differential Expression'
      href: StoryOfInitialAnalysis.html
    - text: 'Downloads'
      href: downloads.html

output:
  html_document:
    lib_dir: 'libs'
    theme: sandstone
    highlight: textmate
    include:
      after_body: footer.html
    css: styles.css