transcriptome.bibtex

@article{Li2001,
  doi = {10.1093/bioinformatics/17.3.282},
  url = {https://doi.org/10.1093%2Fbioinformatics%2F17.3.282},
  year  = {2001},
  month = {mar},
  publisher = {Oxford University Press ({OUP})},
  volume = {17},
  number = {3},
  pages = {282--283},
  author = {W. Li and L. Jaroszewski and A. Godzik},
  title = {Clustering of highly homologous sequences to reduce the size of large protein databases},
  journal = {Bioinformatics}
}

@article{Eddy2011,
  doi = {10.1371/journal.pcbi.1002195},
  url = {https://doi.org/10.1371%2Fjournal.pcbi.1002195},
  year  = {2011},
  month = {oct},
  publisher = {Public Library of Science ({PLoS})},
  volume = {7},
  number = {10},
  pages = {e1002195},
  author = {Sean R. Eddy},
  editor = {William R. Pearson},
  title = {Accelerated Profile {HMM} Searches},
  journal = {{PLoS} Computational Biology}
}

@article{Grabherr2011,
  doi = {10.1038/nbt.1883},
  url = {https://doi.org/10.1038%2Fnbt.1883},
  year  = {2011},
  month = {may},
  publisher = {Springer Nature},
  volume = {29},
  number = {7},
  pages = {644--652},
  author = {Manfred G Grabherr and Brian J Haas and Moran Yassour and Joshua Z Levin and Dawn A Thompson and Ido Amit and Xian Adiconis and Lin Fan and Raktima Raychowdhury and Qiandong Zeng and Zehua Chen and Evan Mauceli and Nir Hacohen and Andreas Gnirke and Nicholas Rhind and Federica di Palma and Bruce W Birren and Chad Nusbaum and Kerstin Lindblad-Toh and Nir Friedman and Aviv Regev},
  title = {Full-length transcriptome assembly from {RNA}-Seq data without a reference genome},
  journal = {Nature Biotechnology}
}

@article{Camacho2009,
  doi = {10.1186/1471-2105-10-421},
  url = {https://doi.org/10.1186%2F1471-2105-10-421},
  year  = {2009},
  publisher = {Springer Nature},
  volume = {10},
  number = {1},
  pages = {421},
  author = {Christiam Camacho and George Coulouris and Vahram Avagyan and Ning Ma and Jason Papadopoulos and Kevin Bealer and Thomas L Madden},
  title = {BLAST+: architecture and applications},
  journal = {{BMC} Bioinformatics}
}


@misc{1_cleaner_2017,
  author = {Cleaner},
  title = {Sequence Cleaner},
  url = {https://sourceforge.net/projects/seqclean/},
  urldate = {2017-1-12},
  journal = {SourceForge},
  year = {2017}
}