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DRYify CURIE maps / namespaces #134

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joeflack4 opened this issue Sep 9, 2024 · 0 comments
Open

DRYify CURIE maps / namespaces #134

joeflack4 opened this issue Sep 9, 2024 · 0 comments
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Overview

There is no single location where CURIE maps are stored. They appear in:

  • curie_map.yaml
  • namespaces.py

Proposed solution

Refactor so that namespaces.py is dynamically generated from curie_map.yaml

Additional thoughts

I wonder if OMIM could utilize extended prefix maps. Currently we have 2 different Mondo related prefixes (#133):

'MONDO': 'http://purl.obolibrary.org/obo/MONDO_'                    # Monarch Disease Ontology
'MONDONS': 'http://purl.obolibrary.org/obo/mondo#'                  # Monarch Disease Ontology, alternative
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