KMT2D phenopacket warning while loading HPO v2024-12-12 for GPSEA

[UndressK]

I was running this:

choose gene

cohort_name = 'KMT2D'
mane_tx_id = 'NM_003482.4'
mane_px_id = 'NP_003473.3'
phenopacket_v = '0.1.22'

import libraries

import gpsea
import hpotk

store = hpotk.configure_ontology_store()
hpo = store.load_minimal_hpo()
print(f'Loaded HPO v{hpo.version}')
print(f"Using gpsea version {gpsea.version}")

import phenopacket data

from ppktstore.registry import configure_phenopacket_registry
from gpsea.preprocessing import configure_caching_cohort_creator, load_phenopackets

phenopacket_registry = configure_phenopacket_registry()
with phenopacket_registry.open_phenopacket_store(phenopacket_v) as ps:
phenopackets = tuple(ps.iter_cohort_phenopackets(cohort_name))

cohort_creator = configure_caching_cohort_creator(hpo)
cohort, validation = load_phenopackets(
phenopackets=phenopackets,
cohort_creator=cohort_creator,
)
validation.summarize()

And I got this back, in case you want to update those patients:

Validated under permissive policy
Showing errors and warnings
Phenopackets
patient #23
individual
warnings:
·time_element is in currently unsupported format ontology_class
patient #46
phenotype-features
#3
warnings:
·HP:0000368 is an obsolete identifier for Posteriorly rotated ears. Replace HP:0000368 with the primary term ID HP:0000358