From c954b845f9adf7fe5006e955dac9ea25de9b8773 Mon Sep 17 00:00:00 2001 From: Ryan Morin Date: Mon, 2 Sep 2024 16:32:22 -0700 Subject: [PATCH] remove carriage return --- resources/curated/bl_genes.tsv | 348 ++++++++++++++++----------------- 1 file changed, 174 insertions(+), 174 deletions(-) diff --git a/resources/curated/bl_genes.tsv b/resources/curated/bl_genes.tsv index 3209b2b6..c075f89f 100644 --- a/resources/curated/bl_genes.tsv +++ b/resources/curated/bl_genes.tsv @@ -1,175 +1,175 @@ -Gene Tier aSHM QC Mean Variant Quality citekey PMID MutationEffect Mutation-PMID -ARID1A 1 loveGeneticLandscapeMutations2012 23143597 LOF 38458187 -BACH2 1 TRUE grandeGenomewideDiscoverySomatic2019 30617194 -BCL6 1 TRUE PASS 4 loveGeneticLandscapeMutations2012 30617194 LOF 12504096 -BCL7A 1 TRUE grandeGenomewideDiscoverySomatic2019 30617194 LOF 32576963 -BMP7 1 paneaWholeGenomeLandscape2019 31558468 -CCND3 1 richterRecurrentMutationID32012a 23143595 GOF 22885699 -CHD8 1 grandeGenomewideDiscoverySomatic2019 36201743 -CREBBP 1 PASS 4 loveGeneticLandscapeMutations2012 23143597 LOF 33431788 -DDX3X 1 schmitzBurkittLymphomaPathogenesis2012 22885699 LOF 34437837 -FBXO11 1 richterRecurrentMutationID32012a 23143595 LOF 22113614 -FOXO1 1 schmitzBurkittLymphomaPathogenesis2012 22885699 GOF 23460611 -GNA13 1 loveGeneticLandscapeMutations2012 23143597 LOF 26616858 -GNAI2 1 grandeGenomewideDiscoverySomatic2019 30617194 GOF 23699601 -HIST1H1E 1 TRUE grandeGenomewideDiscoverySomatic2019 31558468 -HNRNPU 1 TRUE paneaWholeGenomeLandscape2019 31558468 LOF 36201743 -ID3 1 richterRecurrentMutationID32012a 23143595 LOF 23143595 -KMT2D 1 grandeGenomewideDiscoverySomatic2019 30617194 LOF 26366712 -MYC 1 TRUE johnstonCmycHypermutationBurkitt1992 1297477 GOF 38565249 -P2RY8 1 muppidiLossSignalingGa132014b 25274307 LOF 25274307 -PCBP1 1 schmitzBurkittLymphomaPathogenesis2012 22885699 -PHF6 1 thomasGeneticSubgroupsInform2023 36201743 -PTEN 1 loveGeneticLandscapeMutations2012 23143597 LOF 23840064 -RFX7 1 grandeGenomewideDiscoverySomatic2019 30617194 LOF 30926791 -RHOA 1 richterRecurrentMutationID32012a 23143595 LOF 26616858 -SIN3A 1 grandeGenomewideDiscoverySomatic2019 30617194 -SMARCA4 1 richterRecurrentMutationID32012a 23143595 LOF 33144586 -TCF3 1 schmitzBurkittLymphomaPathogenesis2012 22885699 GOF 22885699 -TCL1A 1 TRUE grandeGenomewideDiscoverySomatic2019 30617194 -TFAP4 1 grandeGenomewideDiscoverySomatic2019 30617194 LOF 34283887 -TP53 1 wildaInactivationARFMDM2p53Pathway2004 14712292 LOF 12826609 -USP7 1 grandeGenomewideDiscoverySomatic2019 30617194 -WNK1 1 thomasGeneticSubgroupsInform2023 36201743 -ADAMTS5 2 burkhardtClinicalRelevanceMolecular2022b 35794096 -ADNP 2 burkhardtClinicalRelevanceMolecular2022b 35794096 -AGO4 2 burkhardtClinicalRelevanceMolecular2022b 35794096 -ARHGEF1 2 muppidiLossSignalingGa132014b 25274307 -BCL2 2 TRUE burkhardtClinicalRelevanceMolecular2022b 35794096 -BTG1 2 TRUE burkhardtClinicalRelevanceMolecular2022b 35794096 -C16orf48 2 schmitzBurkittLymphomaPathogenesis2012 22885699 -CARD4 2 PASS 4 loveGeneticLandscapeMutations2012 23143597 -CCNF 2 abateDistinctViralMutational2015a 26468873 -CD79A 2 burkhardtClinicalRelevanceMolecular2022b 35794096 -CD83 2 TRUE PASS 3 paneaWholeGenomeLandscape2019 31558468 -CDC73 2 PASS 3 loveGeneticLandscapeMutations2012 23143597 -CDKN2A 2 grandeGenomewideDiscoverySomatic2019 30617194 -CDKN2C 2 thomasGeneticSubgroupsInform2023 36201743 -CHD4 2 burkhardtClinicalRelevanceMolecular2022b 35794096 -CPXM2 2 burkhardtClinicalRelevanceMolecular2022b 35794096 -CXCR4 2 TRUE PASS 4 paneaWholeGenomeLandscape2019 31558468 -DHCR7 2 schmitzBurkittLymphomaPathogenesis2012 22885699 -E2F2 2 burkhardtClinicalRelevanceMolecular2022b 35794096 -EBF1 2 TRUE thomasGeneticSubgroupsInform2023 NA -EDNRB 2 burkhardtClinicalRelevanceMolecular2022b 35794096 -EHD1 2 thomasGeneticSubgroupsInform2023 NA -EIF4A1 2 paneaWholeGenomeLandscape2019 31558468 -ELP2 2 schmitzBurkittLymphomaPathogenesis2012 22885699 -EPPK1 2 paneaWholeGenomeLandscape2019 31558468 -ERAP1 2 burkhardtClinicalRelevanceMolecular2022b 35794096 -EXOSC6 2 schmitzBurkittLymphomaPathogenesis2012 22885699 -EZH2 2 PASS 5 loveGeneticLandscapeMutations2012 23143597 -FLYWCH1 2 schmitzBurkittLymphomaPathogenesis2012 22885699 -GGTLA4 2 PASS 4 loveGeneticLandscapeMutations2012 23143597 -GTSE1 2 schmitzBurkittLymphomaPathogenesis2012 22885699 -HIST1H3D 2 TRUE PASS 3 paneaWholeGenomeLandscape2019 31558468 -HIST1H3I 2 TRUE PASS 4 paneaWholeGenomeLandscape2019 31558468 -HIST1H4J 2 TRUE PASS 3 paneaWholeGenomeLandscape2019 31558468 -HLA-DQB1 2 burkhardtClinicalRelevanceMolecular2022b 35794096 -IGLL5 2 TRUE PASS 4 paneaWholeGenomeLandscape2019 31558468 -IKZF3 2 TRUE PASS 3 paneaWholeGenomeLandscape2019 31558468 -IRF8 2 TRUE PASS 4 paneaWholeGenomeLandscape2019 31558468 -KANK2 2 schmitzBurkittLymphomaPathogenesis2012 22885699 -KLHL26 2 burkhardtClinicalRelevanceMolecular2022b 35794096 -KMT2C 2 zhouSporadicEndemicBurkitt2019 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35794096 -S1PR2 2 TRUE muppidiLossSignalingGa132014b 25274307 -SAL3 2 burkhardtClinicalRelevanceMolecular2022b 35794096 -TET2 2 thomasGeneticSubgroupsInform2023 36201743 -TOP2A 2 schmitzBurkittLymphomaPathogenesis2012 22885699 -TTN 2 burkhardtClinicalRelevanceMolecular2022b 35794096 -VWA7 2 burkhardtClinicalRelevanceMolecular2022b 35794096 -WDR90 2 schmitzBurkittLymphomaPathogenesis2012 22885699 -WHAMM 2 schmitzBurkittLymphomaPathogenesis2012 22885699 -WNK2 2 PASS 4 paneaWholeGenomeLandscape2019 31558468 -YY1AP1 2 schmitzBurkittLymphomaPathogenesis2012 22885699 -ZAN 2 burkhardtClinicalRelevanceMolecular2022b 35794096 -ZBTB7A 2 burkhardtClinicalRelevanceMolecular2022b 35794096 -ZFP36L1 2 TRUE PASS 4 paneaWholeGenomeLandscape2019 31558468 -ZNF85 2 burkhardtClinicalRelevanceMolecular2022b 35794096 -ACAD9 3 FAIL 1 loveGeneticLandscapeMutations2012 23143597 -ACE 3 FAIL 1 loveGeneticLandscapeMutations2012 23143597 -ALPK2 3 FAIL 1 paneaWholeGenomeLandscape2019 31558468 -ATP2C2 3 FAIL 2 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loveGeneticLandscapeMutations2012 23143597 -KCNK10 3 FAIL 2 paneaWholeGenomeLandscape2019 31558468 -KIFC3 3 FAIL 1 loveGeneticLandscapeMutations2012 23143597 -MAP3K6 3 FAIL 1 loveGeneticLandscapeMutations2012 23143597 -MME 3 FAIL 1 paneaWholeGenomeLandscape2019 31558468 -MTOR 3 FAIL 1 paneaWholeGenomeLandscape2019 31558468 -MYH10 3 FAIL 1 loveGeneticLandscapeMutations2012 23143597 -NOTCH1 3 FAIL 1 loveGeneticLandscapeMutations2012 23143597 -NRXN2 3 FAIL 1 loveGeneticLandscapeMutations2012 23143597 -PABPC4L 3 FAIL 2 paneaWholeGenomeLandscape2019 31558468 -PC 3 FAIL 1 loveGeneticLandscapeMutations2012 23143597 -PCDHA11 3 FAIL 1 paneaWholeGenomeLandscape2019 31558468 -PDZRN3 3 FAIL 1 paneaWholeGenomeLandscape2019 31558468 -PIK3R1 3 FAIL 1 paneaWholeGenomeLandscape2019 31558468 -POLRMT 3 FAIL 1 loveGeneticLandscapeMutations2012 23143597 -POR 3 FAIL 1 loveGeneticLandscapeMutations2012 23143597 -PRSS22 3 FAIL 1 loveGeneticLandscapeMutations2012 23143597 -PTPRN 3 FAIL 1 loveGeneticLandscapeMutations2012 23143597 -PXDNL 3 FAIL 1 paneaWholeGenomeLandscape2019 31558468 -RBP3 3 FAIL 1 loveGeneticLandscapeMutations2012 23143597 -RET 3 FAIL 1 loveGeneticLandscapeMutations2012 23143597 -SALL3 3 FAIL 2 loveGeneticLandscapeMutations2012 23143597 -SAPS2 3 FAIL 1 loveGeneticLandscapeMutations2012 23143597 -SBF1 3 FAIL 2 loveGeneticLandscapeMutations2012 23143597 -SF3B1 3 FAIL 4 loveGeneticLandscapeMutations2012 23143597 -SHANK1 3 FAIL 1 loveGeneticLandscapeMutations2012 23143597 -SLC29A2 3 FAIL 1 loveGeneticLandscapeMutations2012 23143597 -SNTB2 3 FAIL 2 paneaWholeGenomeLandscape2019 31558468 -SYNGAP1 3 FAIL 1 loveGeneticLandscapeMutations2012 23143597 -TBC1D9B 3 FAIL 1 loveGeneticLandscapeMutations2012 23143597 -TIGD6 3 FAIL 1 loveGeneticLandscapeMutations2012 23143597 -TPST2 3 FAIL 0 loveGeneticLandscapeMutations2012 23143597 -WDR7 3 FAIL 2 paneaWholeGenomeLandscape2019 31558468 +Gene Tier aSHM QC Mean Variant Quality citekey PMID MutationEffect Mutation-PMID 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richterRecurrentMutationID32012a 23143595 LOF 23143595 +KMT2D 1 grandeGenomewideDiscoverySomatic2019 30617194 LOF 26366712 +MYC 1 TRUE johnstonCmycHypermutationBurkitt1992 1297477 GOF 38565249 +P2RY8 1 muppidiLossSignalingGa132014b 25274307 LOF 25274307 +PCBP1 1 schmitzBurkittLymphomaPathogenesis2012 22885699 +PHF6 1 thomasGeneticSubgroupsInform2023 36201743 +PTEN 1 loveGeneticLandscapeMutations2012 23143597 LOF 23840064 +RFX7 1 grandeGenomewideDiscoverySomatic2019 30617194 LOF 30926791 +RHOA 1 richterRecurrentMutationID32012a 23143595 LOF 26616858 +SIN3A 1 grandeGenomewideDiscoverySomatic2019 30617194 +SMARCA4 1 richterRecurrentMutationID32012a 23143595 LOF 33144586 +TCF3 1 schmitzBurkittLymphomaPathogenesis2012 22885699 GOF 22885699 +TCL1A 1 TRUE grandeGenomewideDiscoverySomatic2019 30617194 +TFAP4 1 grandeGenomewideDiscoverySomatic2019 30617194 LOF 34283887 +TP53 1 wildaInactivationARFMDM2p53Pathway2004 14712292 LOF 12826609 +USP7 1 grandeGenomewideDiscoverySomatic2019 30617194 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paneaWholeGenomeLandscape2019 31558468 +SYNGAP1 3 FAIL 1 loveGeneticLandscapeMutations2012 23143597 +TBC1D9B 3 FAIL 1 loveGeneticLandscapeMutations2012 23143597 +TIGD6 3 FAIL 1 loveGeneticLandscapeMutations2012 23143597 +TPST2 3 FAIL 0 loveGeneticLandscapeMutations2012 23143597 +WDR7 3 FAIL 2 paneaWholeGenomeLandscape2019 31558468 ZNF229 3 FAIL Germline loveGeneticLandscapeMutations2012 23143597 \ No newline at end of file