compile error: fatal error: test/testdata.h: No such file or directory

[Yunxia-li]

$ install.sh
$ In file included from src/seedsLinking.cpp:1:0:
src/seedsLinking.h:5:27: fatal error: test/testdata.h: No such file or directory
#include "test/testdata.h"
^
compilation terminated.

Why? I had install quorum kmc though anaconda , but I still got the error message.

Please let me know where is the problem?

Thanks

[morispi]

Hello,

Did you install HG-CoLoR through bioconda/anaconda too? Unfortunately, I do not maintain the *conda versions myself, so I'm not sure what's been made available through them.

Seems like the compiler is looking for a "test/testdata.h" that it cannot find through your PATH. This file should come from the PgSA library that has to be installed in order for HG-CoLoR to run.

Could you maybe try to clone the HG-CoLoR git repository, and run the install.sh script from there? Normally, it should take care of everything.

Cheers,
Pierre