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mschubert / TCGAbiolinks-downloader Public

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TCGAbiolinks-downloader

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clinical.r

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8 lines (5 loc) · 164 Bytes

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TCGAbiolinks-downloader

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clinical.r

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8 lines (5 loc) · 164 Bytes

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library(TCGAbiolinks)

PROJECT = commandArgs(TRUE)[1]

OUTFILE = commandArgs(TRUE)[2]

data = GDCquery_clinic(PROJECT, type="clinical")

saveRDS(data, file=OUTFILE)

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