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conf.py
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conf.py
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# -*- coding: utf-8 -*-
#
# ome documentation build configuration file, created by
# sphinx-quickstart on Wed Feb 22 20:24:38 2012.
#
# This file is execfile()d with the current directory set to its containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# All configuration values have a default; values that are commented out
# serve to show the default.
import sys, os
import re
# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.
#sys.path.insert(0, os.path.abspath('.'))
# -- General configuration -----------------------------------------------------
# If your documentation needs a minimal Sphinx version, state it here.
#needs_sphinx = '1.0'
# Add any Sphinx extension module names here, as strings. They can be extensions
# coming with Sphinx (named 'sphinx.ext.*') or your custom ones.)
extensions = ['sphinx.ext.extlinks']
# Add any paths that contain templates here, relative to this directory.
templates_path = ['_templates']
# The suffix of source filenames.
source_suffix = '.txt'
# The encoding of source files.
#source_encoding = 'utf-8-sig'
# The master toctree document.
master_doc = 'index'
# General information about the project.
project = u'OMERO'
title = project + u' Documentation'
author = u'The Open Microscopy Environment'
copyright = u'2000-2012, ' + author
# The version info for the project you're documenting, acts as replacement for
# |version| and |release|, also used in various other places throughout the
# built documents.
#
if "OMERO_RELEASE" in os.environ:
release = os.environ.get('OMERO_RELEASE')
split_release = re.split("^([0-9]\.[0-9])(\.[0-9]+)(.*?)$",release)
# The short X.Y version.
version = split_release[1]
previousversion = version[:-1] + str(int(version[-1])-1)
if not release[-1] == "0":
tags.add('point_release')
else:
version = 'UNKNOWN'
previousversion = 'UNKNOWN'
release = 'UNKNOWN'
# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
#language = None
# There are two options for replacing |today|: either, you set today to some
# non-false value, then it is used:
#today = ''
# Else, today_fmt is used as the format for a strftime call.
#today_fmt = '%B %d, %Y'
# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
exclude_patterns = ['_build', 'trac' ]
# The reST default role (used for this markup: `text`) to use for all documents.
#default_role = None
# If true, '()' will be appended to :func: etc. cross-reference text.
#add_function_parentheses = True
# If true, the current module name will be prepended to all description
# unit titles (such as .. function::).
#add_module_names = True
# If true, sectionauthor and moduleauthor directives will be shown in the
# output. They are ignored by default.
#show_authors = False
# The name of the Pygments (syntax highlighting) style to use.
pygments_style = 'sphinx'
# A list of ignored prefixes for module index sorting.
#modindex_common_prefix = []
if "SOURCE_BRANCH" in os.environ:
branch = os.environ.get('SOURCE_BRANCH')
else:
branch = 'develop'
extlinks = {
'ticket' : ('http://trac.openmicroscopy.org.uk/ome/ticket/%s', '#'),
'milestone' : ('http://trac.openmicroscopy.org.uk/ome/milestone/%s', ''),
'report' : ('http://trac.openmicroscopy.org.uk/ome/report/%s', ''),
'snapshot' : ('http://cvs.openmicroscopy.org.uk/snapshots/%s', ''),
'doi' : ('http://dx.doi.org/%s', ''),
'source' : ('https://github.com/openmicroscopy/openmicroscopy/blob/'+ branch + '/%s', ''),
'sourcedir' : ('https://github.com/openmicroscopy/openmicroscopy/tree/'+ branch + '/%s', ''),
'omedocs' : ('https://github.com/openmicroscopy/ome-documentation/%s', ''),
'javadoc' : ('http://hudson.openmicroscopy.org.uk/job/OMERO/javadoc/%s', ''),
'jenkins' : ('http://hudson.openmicroscopy.org.uk/%s', ''),
'mailinglist' : ('http://lists.openmicroscopy.org.uk/mailman/listinfo/%s', ''),
'forum' : ('http://www.openmicroscopy.org/community/%s', ''),
'bioformats' : ('http://loci.wisc.edu/software/bio-formats/%s', ''),
# Plone links. Separating them out so that we can add prefixes and
# suffixes during testing.
'community_plone' : ('http://www.openmicroscopy.org/site/community/%s', ''),
'feature_plone' : ('http://www.openmicroscopy.org/site/products/feature-list/%s', ''),
'formats_plone' : ('http://www.openmicroscopy.org/site/support/file-formats/%s', ''),
'legacy_plone' : ('http://www.openmicroscopy.org/site/support/legacy/%s', ''),
'about_plone' : ('http://www.openmicroscopy.org/site/about/%s', ''),
'team_plone' : ('http://www.openmicroscopy.org/site/team/%s', ''),
'faq_plone' : ('http://www.openmicroscopy.org/site/support/faq/%s', ''),
'omero_plone' : ('http://www.openmicroscopy.org/site/products/omero/%s/', ''),
'bf_plone' : ('http://www.openmicroscopy.org/site/products/bio-formats/%s/', ''),
}
rst_epilog = """
.. _Hibernate: http://www.hibernate.org
.. _ZeroC: http://www.zeroc.com
.. _Ice: http://www.zeroc.com
.. _Jenkins: http://jenkins-ci.org
.. _roadmap: https://trac.openmicroscopy.org.uk/ome/roadmap
.. _Open Microscopy Environment: http://www.openmicroscopy.org/site
.. _Glencoe Software, Inc.: http://www.glencoesoftware.com/
.. _Python Imaging Library: http://www.pythonware.com/products/pil/
.. _Matplotlib: http://matplotlib.org/
.. _Python: http://python.org
.. |SSH| replace:: :abbr:`SSH (Secure Shell)`
.. |VM| replace:: :abbr:`VM (Virtual Machine)`
.. |OS| replace:: :abbr:`OS (Operating System)`
.. |SSL| replace:: :abbr:`SSL (Secure Socket Layer)`
.. |HDD| replace:: :abbr:`HDD (Hard Disk Drive)`
.. |OME| replace:: `Open Microscopy Environment`_
.. |Glencoe| replace:: `Glencoe Software, Inc.`_
.. |OmeroPy| replace:: :doc:`/developers/Python`
.. |OmeroCpp| replace:: :doc:`/developers/Cpp`
.. |OmeroJava| replace:: :doc:`/developers/Java`
.. |OmeroMatlab| replace:: :doc:`/developers/Matlab`
.. |OmeroCli| replace:: :doc:`/sysadmins/CommandLine`
.. |OmeroApi| replace:: :doc:`/developers/Modules/Api`
.. |OmeroWeb| replace:: :doc:`/developers/Web`
.. |OmeroClients| replace:: :doc:`/developers/GettingStarted`
.. |OmeroGrid| replace:: :doc:`/sysadmins/grid`
.. |OmeroSessions| replace:: :doc:`/developers/Server/Sessions`
.. |OmeroModel| replace:: :doc:`/developers/Model`
.. |ExtendingOmero| replace:: :doc:`/developers/Server/ExtendingOmero`
.. |BlitzGateway| replace:: :doc:`/developers/Python`
.. |DevelopingOmeroClients| replace:: :doc:`/developers/GettingStarted/AdvancedClientDevelopment`
"""
rst_epilog += """.. |previousversion| replace:: %s""" % previousversion
# -- Options for HTML output ---------------------------------------------------
# The theme to use for HTML and HTML Help pages. See the documentation for
# a list of builtin themes.
html_theme = 'sphinxdoc'
# Theme options are theme-specific and customize the look and feel of a theme
# further. For a list of options available for each theme, see the
# documentation.
#html_theme_options = {}
# Add any paths that contain custom themes here, relative to this directory.
html_theme_path = ['themes']
# The name for this set of Sphinx documents. If None, it defaults to
# "<project> v<release> documentation".
#html_title = None
# A shorter title for the navigation bar. Default is the same as html_title.
#html_short_title = None
# The name of an image file (relative to this directory) to place at the top
# of the sidebar.
#html_logo = None
# The name of an image file (within the static path) to use as favicon of the
# docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32
# pixels large.
#html_favicon = None
# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ['_static']
# If not '', a 'Last updated on:' timestamp is inserted at every page bottom,
# using the given strftime format.
#html_last_updated_fmt = '%b %d, %Y'
# If true, SmartyPants will be used to convert quotes and dashes to
# typographically correct entities.
#html_use_smartypants = True
# Custom sidebar templates, maps document names to template names.
#html_sidebars = {}
# Additional templates that should be rendered to pages, maps page names to
# template names.
#html_additional_pages = {}
# If false, no module index is generated.
#html_domain_indices = True
# If false, no index is generated.
#html_use_index = True
# If true, the index is split into individual pages for each letter.
#html_split_index = False
# If true, links to the reST sources are added to the pages.
#html_show_sourcelink = True
# If true, "Created using Sphinx" is shown in the HTML footer. Default is True.
#html_show_sphinx = True
# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True.
#html_show_copyright = True
# If true, an OpenSearch description file will be output, and all pages will
# contain a <link> tag referring to it. The value of this option must be the
# base URL from which the finished HTML is served.
#html_use_opensearch = ''
# This is the file name suffix for HTML files (e.g. ".xhtml").
#html_file_suffix = None
# Output file base name for HTML help builder.
htmlhelp_basename = 'projstandardsdoc'
# -- Options for LaTeX output --------------------------------------------------
latex_elements = {
# The paper size ('letterpaper' or 'a4paper').
#'papersize': 'letterpaper',
# The font size ('10pt', '11pt' or '12pt').
#'pointsize': '10pt',
# Additional stuff for the LaTeX preamble.
#'preamble': '',
}
# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title, author, documentclass [howto/manual]).
target = project + '-' + release + '.tex'
latex_documents = [
(master_doc, target, title, author, 'manual'),
]
# The name of an image file (relative to this directory) to place at the top of
# the title page.
latex_logo = 'images/ome-tight.pdf'
# For "manual" documents, if this is true, then toplevel headings are parts,
# not chapters.
latex_use_parts = True
# If true, show page references after internal links.
#latex_show_pagerefs = False
# If true, show URL addresses after external links.
latex_show_urls = 'footnote'
# Documents to append as an appendix to all manuals.
#latex_appendices = []
# If false, no module index is generated.
#latex_domain_indices = True
# -- Options for manual page output --------------------------------------------
# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [
(master_doc, 'OMERO', title, author, 1)
]
# If true, show URL addresses after external links.
#man_show_urls = False
# -- Options for Texinfo output ------------------------------------------------
# Grouping the document tree into Texinfo files. List of tuples
# (source start file, target name, title, author,
# dir menu entry, description, category)
texinfo_documents = [
(master_doc, project, title, author, 'omedocs', 'One line description of project.',
'Miscellaneous'),
]
# Documents to append as an appendix to all manuals.
#texinfo_appendices = []
# If false, no module index is generated.
#texinfo_domain_indices = True
# How to display URL addresses: 'footnote', 'no', or 'inline'.
#texinfo_show_urls = 'footnote'
# -- Options for the linkcheck builder ----------------------------------------
# Timeout value, in seconds, for the linkcheck builder
if not (sys.version_info[0] == 2 and sys.version_info[1] <= 5):
linkcheck_timeout = 30
# Regular expressions that match URIs that should not be checked when doing a linkcheck build
linkcheck_ignore = [r'http://localhost:\d+/', 'http://localhost/', 'http://www.hibernate.org',
r'^https?://www\.openmicroscopy\.org/site/team/.*', r'.*[.]?example\.com/.*', r'.*\.host.*',
r'.*serverName.*', r'^https?://www\.openmicroscopy\.org/site/support/faq.*',]