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Error during merging bedmethyl files #342

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ralanany opened this issue Jan 14, 2025 · 1 comment
Open

Error during merging bedmethyl files #342

ralanany opened this issue Jan 14, 2025 · 1 comment
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troubleshooting workflow and data preparation questions

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@ralanany
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I am trying to merge two bedmethyl files, each produced from 2 different samples, using this command
modkit bedmethyl merge sample_a.bed.gz sample_b.bed.gz > merged.bed

I get this error
error: unrecognized subcommand 'bedmethyl'

Usage: modkit

For more information, try '--help'.

when I used modkit --help
I didn't find bedmethyl merge as a subcommand, would you help please?

@ArtRand
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ArtRand commented Jan 15, 2025

Hello @ralanany,

Which version of modkit do you have installed. The bedmethyl merge command was introduced in 0.4.2.

@ArtRand ArtRand added the troubleshooting workflow and data preparation questions label Jan 15, 2025
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