Version 0.4.1

NBLAST-related bugfixes

Version 0.4.0

• native implementation of NBLAST: see navis.nblast and navis.nblast_allbyall!
• plot3d with plotly accepts a new parameter: if hover_id=True it will show its ID when hovering over a node
• a couple of bugfixes

Version 0.3.4

Bug fixes and improvements for Dotprops:

• fix bug in creation (navis.make_dotprops) that lead to points wrong
• allow passing of dot props to interfaces.r.xform_brain and interfaces.r.mirror_brain
• new method: recalculate_tangents

Version 0.3.3

Fixes a critical bug when plotting volumes using the Plotly backend. Plus a bunch of small bugfixes.

Version 0.3.2

Lots of new stuff, improvements to existing functions and tons of bug fixes:

• new 'color_by' and 'shade_by' parameters for plot2d and plot3d
• make NeuronLists pickleable
• new functions: insert_nodes and remove_nodes to insert/drop nodes from TreeNeuron without disconnecting the neuron
• new function: resample_along_axis resamples TreeNeurons such that you get nodes exactly in provided intervals
• total reworks of topology related functions strahler_index, segregation_index, bending_flow, flow_centrality and split_axon_dendrite
• new topology function: arbor_segregation_index
• fix some bugs in the VisPy viewer
• total rework of Dotprops - now a subclass of BaseNeuron
• added functions to read and write Dotprops from/to .nrrd files
• new module models currently featuring a network TraversalModel

Version 0.3.1

• allow mesh-like objects for certain functions (e.g. in_volume or plot3d)
• a couple small bug fixed

Version 0.3.0

Lots of under-the-hood improvements and bug fixes. Most notably:

• reworked interface with R's nat.nblast
• improved (read: orders of magnitude faster) stitch_neurons and heal_fragmented_neuron
• under the hood changes to neuron property caching

See here for the full change log.

Version 0.2.2

Lots of under-the-hood improvements and bug fixes. In particular, these changes should make subclassing of navis' neuron objects easier. See here for the full change log.

Version 0.2.0 Release

Most important changes:
- new neuron class navis.MeshNeuron that consists of vertices and faces
- we now use ncollpyde for ray casting (intersections)
- new example data from the Janelia hemibrain data set
- breaking changes: navis.nx2neuron now returns a navis.TreeNeuron instead of a DataFrame