what the columns when the inputs are bed files?

[olechnwin]

Hi,
I'm hoping I can get some answers even though this github looks pretty deserted.

I ran the idr using input files that looks like this:

track type=narrowPeak name="peaks1.bed" description="peaks1.bed" nextItemButton=on
chr1	12237	15856	peaks1.bed_narrowPeak1	367	.	0.00000	0.00000	0.00000	905
chr1	16017	16585	peaks1.bed_narrowPeak2	90	.	0.00000	0.00000	0.00000	425

The fifth column is -log10(pvalue) of peaks.

I ran idr using the following command:

idr --samples peaks1.bed peaks2.bed \
	--input-file-type bed \
	--rank 5 \
	--output-file peaks1_peaks2-idr  \
	--plot \
	--log-output-file peaks1_peaks2.idr.log

The output I got is this:

chr3	122863912	122880767	.	1000	.	5.00	5.00	122863912	122880767	58149.00000	122864004	122880714	30237.00000
chr18	10456599	10467214	.	1000	.	5.00	5.00	10456599	10467214	49558.00000	10456626	10467173	20877.00000

What are the columns? This output does not have the same number of columns as the narrowpeak output file.

[mariaUCL]

Did you resolve this? I am having the exact same problem