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Can I use IDR to analyze ChIPseq or Cuttag data of histones? #51

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AIBio opened this issue Jul 2, 2020 · 0 comments
Open

Can I use IDR to analyze ChIPseq or Cuttag data of histones? #51

AIBio opened this issue Jul 2, 2020 · 0 comments

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@AIBio
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AIBio commented Jul 2, 2020

Hi,
I'm confusing about how to get the reproducible peaks from replicates of histone data. The IDR is recommended in ENCODE pipeline for TF ChIPseq data. How about histone data? Can I continue to use IDR to do the same task?
I'm looking forward your reply.
Thanks~
Hanwen

@AIBio AIBio changed the title Can I use IDR to analyze ChIPseq or Cuttag of histone data? Can I use IDR to analyze ChIPseq or Cuttag data of histones? Jul 2, 2020
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