From ad572eb7adf960b5318a8ddeb1ef71771af7ec70 Mon Sep 17 00:00:00 2001 From: Adam Taylor Date: Mon, 29 Jul 2024 19:58:52 +0100 Subject: [PATCH 1/2] Remove stripe calling validation rule --- HTAN.model.csv | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/HTAN.model.csv b/HTAN.model.csv index 2fd81330..951ebe17 100644 --- a/HTAN.model.csv +++ b/HTAN.model.csv @@ -177,7 +177,7 @@ Ligation Condition,Name of ligase and condition for proximity ligation,,,,TRUE,S Biotin Enrichment,Whether biotin is used for enriching ligation product,"Yes, No",,,TRUE,Sequencing,,, DNA Input Amount,"Amount of DNA for library construction, in nanograms.",,,,TRUE,Sequencing,,,int Resolution,"Binning size used for generating contact matrix, in basepair.",,,,TRUE,Sequencing,,, -Stripe Calling,"Tool used for identifying architectural stripe-forming, interaction hotspots.","MACS2, Other",,,TRUE,Sequencing,,,list::-?\d+ +Stripe Calling,"Tool used for identifying architectural stripe-forming, interaction hotspots.","MACS2, Other",,,TRUE,Sequencing,,, Loop Window,Binning size used for calling significant dot interactions (loops),,,,TRUE,Sequencing,,,list like :: regex search -?\d+ Stripe Window,Binning size used for calling significant architectural stripes. Can be an integer or comma-separated list of integers indicating bin size and sliding window size if different.,,,,TRUE,Sequencing,,,list like :: regex search -?\d+ Loop Calling,Tool used for identifying loop interactions,"HiCCUPS, Cooltools, Other",,,TRUE,Sequencing,,, From d539cb4ca682d0fabef67aa819bfb18b2cdcb2e2 Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" <41898282+github-actions[bot]@users.noreply.github.com> Date: Mon, 29 Jul 2024 19:07:45 +0000 Subject: [PATCH 2/2] GitHub Action: convert *.model.csv to *.model.jsonld --- HTAN.model.jsonld | 5 +---- 1 file changed, 1 insertion(+), 4 deletions(-) diff --git a/HTAN.model.jsonld b/HTAN.model.jsonld index 8c270b9b..f880905a 100644 --- a/HTAN.model.jsonld +++ b/HTAN.model.jsonld @@ -46687,10 +46687,7 @@ ], "sms:displayName": "Stripe Calling", "sms:required": "sms:true", - "sms:validationRules": [ - "list", - "-?\\d+" - ] + "sms:validationRules": [] }, { "@id": "bts:LoopWindow",