DESCRIPTION

Package: causalBatch
Type: Package
Title: Causal Batch Effects
Version: 1.3.0
Date: 2024-10-14
Authors@R: 
  c(person(given="Eric W.", family="Bridgeford", role=c("aut", "cre"),
    email="ericwb95@gmail.com"),
    person(given="Michael", family="Powell", role="ctb"),
    person(given="Brian", family="Caffo", role="ctb"),
    person(given="Joshua T.", family="Vogelstein", role="ctb")
  )
Maintainer: Eric W. Bridgeford <ericwb95@gmail.com>
Description: Software which provides numerous functionalities for detecting and removing group-level effects from high-dimensional scientific data which, when combined with additional assumptions, allow for causal conclusions, as-described in our manuscripts Bridgeford et al. (2024) <doi:10.1101/2021.09.03.458920> and Bridgeford et al. (2023) <arXiv:2307.13868>. Also provides a number of useful utilities for generating simulations and balancing covariates across multiple groups/batches of data via matching and propensity trimming for more than two groups.
Depends:
  R (>= 4.2.0)
biocViews:
Imports:
  cdcsis,
  sva,
  MatchIt,
  nnet,
  dplyr,
  magrittr,
  genefilter,
  BiocParallel,
  utils
URL:
  https://github.com/neurodata/causal_batch
Encoding: UTF-8
VignetteBuilder: knitr
Suggests:
    tidyr,
    ggpubr,
    knitr,
    rmarkdown,
    parallel,
    testthat (>= 3.0.0),
    covr,
    roxygen2,
    ks,
    ggplot2
License: MIT + file LICENSE
RoxygenNote: 7.3.0
Config/testthat/edition: 3