Nishimura, Principles of Magnetic Resonance Imaging (1996) (NeuroPoly members only)
📄 Eills et al. Spin Hyperpolarization in Modern Magnetic Resonance. Chem. Rev. 2023
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65, 66, 69, 72, 76, 82, 85, 104], "bash": [12, 13, 15, 27, 29, 31, 34, 53, 62, 65], "load": [12, 13, 17, 27, 30, 34, 39, 47, 50, 74, 98], "cd": [12, 13, 27, 30, 37, 38, 39, 53, 62, 72, 99], "start": [12, 15, 19, 25, 31, 34, 38, 54, 62, 69, 78, 79, 88, 92, 97, 98, 99, 107], "launch": [12, 15, 17, 30, 53, 70], "sct_test": [12, 15, 26], "submit": [12, 13, 20, 89, 90, 96], "qsub": [12, 13], "my_job": [12, 13], "pb": [12, 13, 30, 96], "type": [12, 15, 17, 20, 25, 30, 34, 38, 39, 49, 52, 55, 57, 65, 66, 69, 70, 74, 77, 84, 92], "qstat": [12, 13], "tip": [12, 20, 24, 38, 66, 81, 95], "trick": [12, 66], "r": [12, 13, 15, 17, 25, 26, 27, 30, 31, 39, 41, 55, 58, 66, 71, 77, 85, 95], "src": 12, "grames_usernam": [12, 15, 26], "cp": [12, 30, 37, 53], "modul": [12, 17, 36, 39, 66, 92], "path": [12, 13, 17, 24, 27, 30, 34, 37, 38, 42, 49, 53, 54, 61, 62, 65, 66, 69, 70, 77, 82, 85, 96], "subfold": [12, 14, 26, 88], "addpath": 12, "genpath": 12, "your_path": 12, "regist": [13, 20, 27, 66, 74, 95, 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"13": [13, 17, 20, 26, 34], "0": [13, 17, 24, 27, 30, 31, 34, 35, 37, 39, 41, 43, 50, 53, 54, 62, 65, 69, 70, 71, 85, 92, 96, 99, 104, 107], "everyth": [13, 27, 38, 66, 107], "root": [13, 14, 15, 17, 24, 26, 27, 42, 53, 54, 62, 74, 83, 99], "permiss": [13, 15, 17, 25, 26, 38, 39, 55, 62, 65], "anyth": [13, 27, 39, 69, 83, 94, 100, 107], "yourself": [13, 15, 27, 38, 54, 70, 77, 83], "email": [13, 14, 20, 21, 24, 38, 66, 74, 77, 81, 83], "calculquebec": 13, "dot": [13, 20, 57, 74, 107], "someth": [13, 20, 27, 30, 31, 38, 39, 41, 99], "session": [13, 15, 17, 30, 34, 39, 70, 75, 77, 78, 107], "folder": [13, 14, 17, 20, 24, 25, 26, 27, 31, 34, 38, 41, 42, 49, 52, 55, 65, 69, 70, 74, 88, 92, 106], "10gb": 13, "id": [13, 15, 17, 24, 38, 70, 83, 96], "login": [13, 15, 26, 34, 70, 77, 83, 107], "1tb": [13, 27], "serveur": 13, "common": [13, 17, 37, 38, 66], "node": [13, 17, 34, 49], "ppn": 13, "pmem": 13, "31700m": 13, "walltim": 13, "48": [13, 17], "00": [13, 15, 17, 27, 39], "o": [13, 15, 16, 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"upload": [14, 19, 20, 24, 30, 39, 49, 92], "drive": [14, 15, 16, 20, 25, 26, 41, 65, 74, 79, 90, 99, 106, 107], "sender": 14, "button": [14, 20, 38, 66], "drag": [14, 25, 66, 70], "drop": [14, 15, 25, 30, 66, 70], "view": [14, 15, 27, 50, 66, 74, 96], "secret": [14, 72], "messag": [14, 15, 17, 24, 26, 27, 30, 66, 69, 80, 85], "si": [14, 74, 99], "variou": [15, 17, 21, 23, 25, 28, 29, 66, 87, 89], "laboratori": 15, "who": [15, 22, 27, 78], "pxxxxxx": 15, "getent": [15, 62], "passwd": 15, "grames_account": 15, "cut": [15, 19, 22, 66, 96], "tr": [15, 74], "xarg": [15, 17, 30, 39], "n1": 15, "log": [15, 19, 24, 27, 30, 38, 39, 77, 80, 83, 85, 90, 107], "onto": [15, 17], "anoth": [15, 27, 30, 39, 53, 69, 77, 80, 107], "school": [15, 22, 97], "wide": [15, 41, 66, 83], "nightli": [15, 25, 26], "maco": [15, 20, 26, 38, 39, 50, 58, 62, 63, 73, 83, 85, 99], "finder": [15, 25, 26], "cmd": [15, 25, 26, 50, 66, 107], "smb": [15, 25, 26, 96], "hvclusterf": 15, "usag": [15, 17, 66, 92], "etudi": 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"sign": [15, 20, 38, 58, 77, 84], "newli": [15, 27, 93], "configur": [15, 17, 27, 30, 34, 37, 39, 42, 61, 65, 69, 76, 81, 98, 99], "down": [15, 61, 66, 77, 92], "choos": [15, 20, 24, 27, 28, 40, 43, 70, 83, 92], "profil": [15, 17, 58, 81, 82, 83], "p123123": 15, "establish": [15, 17], "polygrames_usernam": [15, 26], "packag": [15, 17, 37, 44, 46, 47, 61, 66, 92], "wsl": [15, 39], "putti": 15, "cmder": 15, "allow": [15, 17, 20, 22, 24, 27, 28, 38, 40, 47, 49, 53, 54, 61, 63, 66, 69, 70, 76, 83, 92, 97], "cat": [15, 17, 27, 30, 34, 39, 83], "config_neuropoli": 15, "eof": [15, 39], "roman": [15, 17, 27], "hostnam": [15, 16, 30, 38, 98], "workstat": [15, 80], "davi": [15, 85, 95], "preferredauthent": 15, "publickei": [15, 38], "polygram": [15, 16, 17, 96], "remov": [15, 27, 31, 34, 41, 55, 61, 66, 69, 85, 92], "comment": [15, 20, 38, 57, 85, 88, 92], "mnt": [15, 17, 26, 62, 65], "issu": [15, 21, 27, 28, 38, 39, 55, 66, 89], "90": [15, 17], "config": [15, 27, 37, 38, 42, 52, 61, 92], "retyp": 15, "controlmast": 15, "auto": [15, 39, 71, 85, 98], "controlpath": 15, "controlpersist": 15, "wai": [15, 20, 27, 38, 39, 69, 70, 74, 86], "sshf": 15, "appear": [15, 27, 38, 39, 69, 71], "were": [15, 22, 24, 27, 37, 38, 92], "yet": [15, 27, 38, 52, 92], "mac": [15, 26, 30, 55, 62, 71], "monterei": 15, "cask": 15, "osxfus": 15, "mkdir": [15, 17, 26, 27, 38, 39, 65, 99], "cluster_fold": 15, "noth": [15, 34, 39, 42], "shown": [15, 66], "rel": [15, 41, 42, 61], "project1": 15, "attach": [15, 27, 30, 96], "exact": 15, "tmp": [15, 17, 37, 41, 53], "experienc": 15, "help": [15, 17, 24, 27, 30, 38, 66, 83, 92], "credenti": [15, 16, 26, 27, 72, 75, 78, 95, 98, 99, 107], "pc": [15, 26], "vinaigr": 15, "manual": [15, 24, 39, 41, 66, 69, 70, 76, 84, 92, 98], "under": [15, 20, 24, 25, 27, 38, 39, 42, 52, 66, 77, 78, 84, 88, 102, 106, 107], "xstartup": 15, "uncom": 15, "two": [15, 20, 24, 26, 34, 39, 41, 46, 54, 66, 77, 80, 92], "unset": [15, 39], "session_manag": 15, 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\ No newline at end of file
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22, 90, 94, 97, 106, 107], "printer": [11, 15, 80], "microsoft": [11, 15, 107], "365": 11, "procedur": [11, 13, 15, 22, 25, 27, 30, 38, 69, 80, 83, 90, 92, 104], "acess": 12, "infrastructur": [12, 17, 79, 80, 89], "he": [12, 54], "person": [12, 15, 24, 26, 27, 38, 75, 77, 78, 80, 89, 90, 92, 107], "qc": [12, 20, 95, 106, 107], "64": [12, 15, 16, 17], "core": [12, 13, 15, 16, 17, 38, 69, 92], "24": [12, 20, 27, 30, 96], "run": [12, 13, 15, 17, 24, 26, 27, 30, 34, 37, 38, 39, 41, 54, 58, 62, 63, 65, 66, 69, 70, 71, 82, 83, 89, 92, 99], "scratch": [12, 13, 15], "faster": [12, 13, 15], "disk": [12, 13, 17, 30, 38, 39, 62], "than": [12, 13, 17, 20, 30, 41, 50, 55, 62, 66, 92, 96, 97], "where": [12, 13, 17, 20, 22, 26, 31, 34, 35, 38, 39, 40, 41, 54, 61, 62, 66, 69, 70, 77, 92], "home": [12, 13, 17, 26, 27, 30, 43, 55, 62, 66, 76, 82, 85, 97, 98], "directori": [12, 15, 26, 30, 34, 38, 39, 53, 54, 66, 69], "temp": [12, 17, 24, 26], "file": [12, 14, 15, 17, 19, 20, 24, 25, 26, 27, 34, 37, 42, 43, 50, 55, 59, 61, 63, 65, 69, 71, 72, 78, 82, 85, 92, 98, 99, 105, 106, 107], "e": [12, 13, 15, 19, 20, 22, 24, 25, 26, 27, 30, 31, 34, 38, 39, 41, 50, 52, 53, 55, 57, 62, 66, 69, 74, 80, 83, 85, 88, 92, 95, 104], "clean": [12, 15, 24, 25, 27, 53, 56, 66, 92, 98], "locat": [12, 15, 18, 24, 26, 27, 30, 61, 66, 69, 75, 78, 96], "compress": [12, 24, 66, 74], "scan": [12, 74, 77, 90, 96, 107], "myelin_06_rescan": 12, "command": [12, 13, 17, 27, 30, 38, 39, 40, 41, 43, 52, 53, 54, 57, 58, 62, 66, 69, 70, 72, 85, 92], "tar": [12, 37, 39, 69], "zcvhf": 12, "gz": [12, 13, 24, 27, 30, 31, 37, 39, 40, 41, 69], "unf": [12, 20, 26, 75], "dicom": [12, 50, 66, 73, 77, 78], "by_group": [12, 78], "myelin_map": 12, "download": [12, 13, 14, 15, 17, 19, 20, 34, 37, 39, 42, 49, 54, 61, 62, 63, 66, 69, 74, 83, 99], "scp": [12, 13, 17, 77], "filezilla": [12, 77], "setup": [12, 72, 79, 80, 85], "connect": [12, 14, 16, 26, 30, 53, 63, 72, 74, 80, 83, 95, 99, 107], "sftp": [12, 27, 66], "server": [12, 17, 23, 25, 26, 27, 30, 38, 39, 53, 65, 77, 80, 84, 105], "sun": 12, "grid": [12, 71], "termin": [12, 13, 17, 27, 30, 31, 34, 38, 49, 52, 53, 61, 62, 69, 70, 73, 85, 92], "ssh": [12, 26, 27, 46, 52, 77, 85, 99], "usernam": [12, 13, 15, 17, 26, 27, 30, 38, 46, 55, 62, 65, 70, 77, 83, 98, 99], "bin": [12, 13, 15, 17, 27, 30, 31, 34, 37, 41, 42, 49, 53, 58, 65, 66, 69, 72, 76, 82, 85, 104], "bash": [12, 13, 15, 27, 29, 31, 34, 53, 62, 65], "load": [12, 13, 17, 27, 30, 34, 39, 47, 50, 74, 98], "cd": [12, 13, 27, 30, 37, 38, 39, 53, 62, 72, 99], "start": [12, 15, 19, 25, 31, 34, 38, 54, 62, 69, 78, 79, 88, 92, 97, 98, 99, 107], "launch": [12, 15, 17, 30, 53, 70], "sct_test": [12, 15, 26], "submit": [12, 13, 20, 89, 90, 96], "qsub": [12, 13], "my_job": [12, 13], "pb": [12, 13, 30, 96], "type": [12, 15, 17, 20, 25, 30, 34, 38, 39, 49, 52, 55, 57, 65, 66, 69, 70, 74, 77, 84, 92], "qstat": [12, 13], "tip": [12, 20, 24, 38, 66, 81, 95], "trick": [12, 66], "r": [12, 13, 15, 17, 25, 26, 27, 30, 31, 39, 41, 55, 58, 66, 71, 77, 85, 95], "src": 12, "grames_usernam": [12, 15, 26], "cp": [12, 30, 37, 53], "modul": [12, 17, 36, 39, 66, 92], "path": [12, 13, 17, 24, 27, 30, 34, 37, 38, 42, 49, 53, 54, 61, 62, 65, 66, 69, 70, 77, 82, 85, 96], "subfold": [12, 14, 26, 88], "addpath": 12, "genpath": 12, "your_path": 12, "regist": [13, 20, 27, 66, 74, 95, 97], "ccdb": 13, "computecanada": [13, 27, 39, 85], "account_appl": 13, "sponsor": 13, "number": [13, 15, 17, 26, 27, 31, 38, 39, 41, 71, 85, 92, 107], "institut": [13, 20, 22, 24, 83, 95, 106, 107], "montreal": [13, 20, 22, 24, 78, 83, 93, 95, 97, 106, 107], "electr": [13, 21, 22], "niagara": [13, 85], "graham": [13, 85], "hpc": [13, 85], "alloc": [13, 17], "identifi": [13, 15, 19, 27, 38, 74, 92], "rapi": 13, "guillimin": [13, 85], "clumeq": 13, "TO": [13, 58, 66, 82], "bash_profil": [13, 38, 42, 65, 69, 70, 82, 85], "bashrc": [13, 37, 49, 65], "bahsrc": 13, "ant": [13, 15, 85], "export": [13, 15, 17, 20, 27, 34, 37, 47, 49, 50, 65, 69, 70, 82, 85, 105, 107], "antspath": 13, "pre": 13, "instal": [13, 17, 27, 30, 54, 56, 65, 66, 70, 71, 74, 83, 85, 92, 99, 102], "ll": [13, 27, 54, 62, 65, 66, 70, 85, 99], "cmake": [13, 69, 85], "put": [13, 14, 22, 31, 38, 42, 61, 66, 69, 77, 80, 97], "module_nam": 13, "git": [13, 15, 17, 24, 26, 27, 29, 30, 31, 37, 52, 53, 58, 61, 66, 72, 85, 90, 92], "13": [13, 17, 20, 26, 34], "0": [13, 17, 24, 27, 30, 31, 34, 35, 37, 39, 41, 43, 50, 53, 54, 62, 65, 69, 70, 71, 85, 92, 96, 99, 104, 107], "everyth": [13, 27, 38, 66, 107], "root": [13, 14, 15, 17, 24, 26, 27, 42, 53, 54, 62, 74, 83, 99], "permiss": [13, 15, 17, 25, 26, 38, 39, 55, 62, 65], "anyth": [13, 27, 39, 69, 83, 94, 100, 107], "yourself": [13, 15, 27, 38, 54, 70, 77, 83], "email": [13, 14, 20, 21, 24, 38, 66, 74, 77, 81, 83], "calculquebec": 13, "dot": [13, 20, 57, 74, 107], "someth": [13, 20, 27, 30, 31, 38, 39, 41, 99], "session": [13, 15, 17, 30, 34, 39, 70, 75, 77, 78, 107], "folder": [13, 14, 17, 20, 24, 25, 26, 27, 31, 34, 38, 41, 42, 49, 52, 55, 65, 69, 70, 74, 88, 92, 106], "10gb": 13, "id": [13, 15, 17, 24, 38, 70, 83, 96], "login": [13, 15, 26, 34, 70, 77, 83, 107], "1tb": [13, 27], "serveur": 13, "common": [13, 17, 37, 38, 66], "node": [13, 17, 34, 49], "ppn": 13, "pmem": 13, "31700m": 13, "walltim": 13, "48": [13, 17], "00": [13, 15, 17, 27, 39], "o": [13, 15, 16, 17, 24, 26, 27, 29, 30, 31, 34, 39, 40, 41, 50, 62, 66, 70, 92, 98], "output": [13, 26, 27, 30, 34, 37, 41, 74, 85, 92], "txt": [13, 31, 41, 42, 55, 69, 85, 92, 99], "error": [13, 15, 17, 30, 34, 38, 39, 41, 46, 69, 74, 85, 92], "build_templ": 13, "final_data_t2": 13, "buildtemplateparallel": 13, "sh": [13, 15, 17, 30, 31, 37, 41, 58, 61, 65, 66, 82, 85], "avt": 13, "nii": [13, 24, 27, 30, 31, 39, 40, 41, 82, 85], "defin": [13, 15, 38, 41, 85, 92], "prioriti": [13, 74, 92, 99], "argument": [13, 30, 31, 41, 62, 66, 70], "integ": 13, "1024": 13, "1023": 13, "inclus": [13, 28, 69, 92], "default": [13, 15, 17, 20, 27, 34, 39, 41, 56, 69, 92, 99], "equival": [13, 66], "begin": [13, 72], "direct": [13, 38, 40, 77, 89], "assign": [13, 22, 62, 89], "u": [13, 15, 27, 28, 30, 34, 38, 62, 66, 74, 77, 96, 102], "queue": 13, "checkjob": 13, "jobid": 13, "showq": 13, "qdel": 13, "6": [13, 17, 22, 27, 30, 34, 39, 41, 43, 54, 61, 66, 70, 72, 74, 76, 96, 107], "virtual": [13, 17, 20, 30, 46, 61, 66], "virtualenv": [13, 17, 72, 82], "venv_nam": 13, "deactiv": [13, 72, 85, 99], "announc": 13, "westgrid": 13, "256": [13, 17], "1gb": [13, 17], "memori": [13, 17, 50, 62], "def": [13, 27], "jcohen": [13, 27, 38, 85, 98], "slurm": 13, "system": [13, 14, 15, 17, 39, 53, 54, 55, 62, 65, 66, 69, 76, 78, 83, 84, 89, 90, 99, 102, 107], "sbatch": 13, "ntask": 13, "mpi": 13, "255": 13, "worker": 13, "mem": [13, 17], "1024m": 13, "unit": [13, 20, 24, 92, 107], "megabyt": 13, "03": [13, 17, 20], "dd": [13, 24, 30, 62, 88], "hh": [13, 24, 30], "mm": [13, 24, 30, 76, 88], "save": [13, 19, 20, 24, 27, 30, 39, 41, 50, 70, 83, 96, 107], "workdir": 13, "data_path": 13, "subject": [13, 27, 30, 31, 38, 39, 58, 71, 74, 92], "sct_pipelin": 13, "nb": [13, 15], "cup": 13, "f": [13, 15, 17, 24, 30, 31, 38, 39, 41, 53, 77, 82, 85], "sct_propseg": 13, "big_dataset": 13, "t2": [13, 40, 71, 74, 104], "propseg": 13, "chmod": [13, 15, 26, 30, 34, 39, 55, 66], "750": 13, "my_sct_script": 13, "execut": [13, 26, 30, 35, 41, 53, 54, 69, 70], "squeue": 13, "uid": [13, 39, 62], "One": [13, 20, 66], "smaller": [13, 20, 41, 50], "scale": [13, 22, 41, 74], "salloc": 13, "wait": [13, 38, 95], "give": [13, 15, 20, 30, 38, 39, 62, 70, 74, 77, 95, 97], "longer": [13, 24, 27, 38, 69, 77], "Then": [13, 15, 17, 20, 24, 27, 34, 38, 41, 62, 65, 66, 70, 84, 107], "interfac": [13, 66, 98], "poq": 13, "coloss": 13, "cq": 13, "laval": 13, "mcgill": [13, 20, 85], "briare": 13, "same": [13, 15, 17, 18, 24, 27, 39, 41, 42, 50, 69, 75, 83, 92], "mammoth": 13, "sherbrook": 13, "mp2": 13, "usherbrook": 13, "helio": 13, "quebec": [13, 20, 22, 27, 80, 94, 97, 106, 107], "version": [13, 17, 20, 24, 27, 30, 34, 38, 49, 54, 66, 69, 70, 73, 77, 94, 106, 107], "compil": [13, 17, 37, 41, 69, 70], "wheelhous": 13, "tensorflow": [13, 17, 54], "gcc": [13, 17, 53], "5": [13, 15, 17, 20, 30, 31, 37, 38, 39, 40, 41, 54, 61, 74, 76, 96, 104, 107], "cuda": [13, 17, 54], "7": [13, 15, 17, 20, 26, 37, 39, 54, 58, 69, 72, 76, 107], "lib": [13, 17, 34, 37, 41, 69, 70], "cudnn": [13, 17, 37, 54], "correct": [13, 24, 38, 69, 74], "env_nam": 13, "specifi": [13, 15, 20, 24, 27, 38, 66], "pip": [13, 37, 58, 72, 85], "version_numb": 13, "isn": [13, 27, 70], "moab": 13, "name": [13, 15, 17, 20, 26, 27, 30, 31, 39, 42, 46, 50, 62, 66, 69, 70, 71, 75, 77, 78, 80, 84, 88, 92], "msub": 13, "option": [13, 15, 17, 20, 24, 27, 31, 34, 38, 39, 41, 43, 46, 54, 62, 69, 70, 83, 95], "host": [13, 15, 17, 25, 27, 30, 46, 53, 54, 62, 107], "pi": [13, 19, 96, 98, 99], "specif": [13, 15, 17, 24, 27, 30, 39, 75, 80, 97, 105, 107], "spinalcordmri": [13, 74], "offic": [14, 15], "gb": [14, 38, 74, 85], "storag": [14, 37, 62], "fr": [14, 17, 22, 42, 95], "product": [14, 70, 96, 102], "address": [14, 15, 17, 18, 25, 26, 38, 52, 66, 72, 83, 84, 92], "spam": 14, "screen": [14, 15, 17, 34, 50, 71, 73, 92], "password": [14, 26, 27, 52, 62, 65, 70, 73, 83, 84, 98, 99], "polymtlca0": 14, "sharepoint": 14, "microsoft365": 14, "spreadsheet": [14, 24], "upload": [14, 19, 20, 24, 30, 39, 49, 92], "drive": [14, 15, 16, 20, 25, 26, 41, 65, 74, 79, 90, 99, 106, 107], "sender": 14, "button": [14, 20, 38, 66], "drag": [14, 25, 66, 70], "drop": [14, 15, 25, 30, 66, 70], "view": [14, 15, 27, 50, 66, 74, 96], "secret": [14, 72], "messag": [14, 15, 17, 24, 26, 27, 30, 66, 69, 80, 85], "si": [14, 74, 99], "variou": [15, 17, 21, 23, 25, 28, 29, 66, 87, 89], "laboratori": 15, "who": [15, 22, 27, 78], "pxxxxxx": 15, "getent": [15, 62], "passwd": 15, "grames_account": 15, "cut": [15, 19, 22, 66, 96], "tr": [15, 74], "xarg": [15, 17, 30, 39], "n1": 15, "log": [15, 19, 24, 27, 30, 38, 39, 77, 80, 83, 85, 90, 107], "onto": [15, 17], "anoth": [15, 27, 30, 39, 53, 69, 77, 80, 107], "school": [15, 22, 97], "wide": [15, 41, 66, 83], "nightli": [15, 25, 26], "maco": [15, 20, 26, 38, 39, 50, 58, 62, 63, 73, 83, 85, 99], "finder": [15, 25, 26], "cmd": [15, 25, 26, 50, 66, 107], "smb": [15, 25, 26, 96], "hvclusterf": 15, "usag": [15, 17, 66, 92], "etudi": [15, 20, 106], "personnel": 15, "duke": [15, 17, 21, 23, 24, 77], "desktop": [15, 25, 69, 80, 98], "creer51": [15, 105], "creer52": [15, 105], "creer53": 15, "your_polygrames_usernam": 15, "your_polygrames_password": 15, "desk": 15, "pick": [15, 17, 26, 27, 39, 80], "particular": [15, 92], "someon": [15, 27, 30, 38], "els": [15, 17, 31, 38, 39, 69, 83, 85], "laptop": [15, 27, 30, 80, 83], "off": [15, 17, 24, 27, 57, 66, 69, 72, 92], "campu": [15, 26, 27, 79, 83], "\u00e9cole": [15, 83], "consult": [15, 28, 79, 80, 95, 96, 106], "happen": [15, 17, 38, 40], "gestion": 15, "vpn_": 15, "actif": [15, 22], "cisco": 15, "anyconnect": 15, "reach": 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the repository": [[38, "fork-the-repository"]], "Keep your branch up-to-date": [[38, "keep-your-branch-up-to-date"]], "Submit a pull request": [[38, "submit-a-pull-request"]], "How to merge specific files from another branch": [[38, "how-to-merge-specific-files-from-another-branch"]], "Branches": [[38, "branches"]], "List remote branches": [[38, "list-remote-branches"]], "Track remote branch": [[38, "track-remote-branch"]], "Checkout existing branch": [[38, "checkout-existing-branch"]], "Checkout branch from fork": [[38, "checkout-branch-from-fork"]], "Clone specific branch": [[38, "clone-specific-branch"]], "Create a branch": [[38, "create-a-branch"]], "Push to remote": [[38, "push-to-remote"]], "Remove a branch": [[38, "remove-a-branch"]], "General usage": [[38, "general-usage"]], "Upload local repository for the first time": [[38, "upload-local-repository-for-the-first-time"]], "Switch local repository to another branch": [[38, "switch-local-repository-to-another-branch"]], "Check which branch you are currently working on": [[38, "check-which-branch-you-are-currently-working-on"]], "Create repository inside repository": [[38, "create-repository-inside-repository"]], "Commits": [[38, "commits"]], "Commit message convention": [[38, "commit-message-convention"]], "Amending Commits": [[38, "amending-commits"]], "Rollbacks": [[38, "rollbacks"]], "Reset Commit": [[38, "reset-commit"]], "HOW TO": [[38, "how-to"]], "Configure git": [[38, "configure-git"]], "Show changed files between two commits": [[38, "show-changed-files-between-two-commits"]], "Reset your branch (revert your local commits)": [[38, "reset-your-branch-revert-your-local-commits"]], "Discard local changes (if pull doesn\u2019t work)": [[38, "discard-local-changes-if-pull-doesn-t-work"]], "Commit: change message": [[38, "commit-change-message"]], "Ignore file mode": [[38, "ignore-file-mode"]], "Come back to previous commit (ignore the latest ones)": [[38, "come-back-to-previous-commit-ignore-the-latest-ones"]], "Fix conflicts during rebasing": [[38, "fix-conflicts-during-rebasing"]], "Recover lost commits after rebase": [[38, "recover-lost-commits-after-rebase"]], "GitHub": [[38, "github"]], "Add SSH key": [[38, "add-ssh-key"]], "port 22: Connection refused": [[38, "port-22-connection-refused"]], "Compare commits/branches/tags": [[38, "compare-commits-branches-tags"]], "Connection closed by remote host": [[38, "connection-closed-by-remote-host"]], "Search file name": [[38, "search-file-name"]], "Tags": [[38, "tags"]], "Checkout specific tag or commit": [[38, "checkout-specific-tag-or-commit"]], "Add tag": [[38, "add-tag"]], "Remove Tag": [[38, "remove-tag"]], "Useful aliases": [[38, "useful-aliases"]], "gpg": [[38, "gpg"]], "Git software": [[38, "git-software"]], "Pycharm": [[38, "pycharm"]], "SourceTree": [[38, "sourcetree"]], "Select default branches for pushing": [[38, "select-default-branches-for-pushing"]], "Switch to another branch": [[38, "switch-to-another-branch"]], "Update your branch": [[38, "update-your-branch"]], "git-annex": [[39, "git-annex"]], "Global git config": [[39, "global-git-config"]], "New repo": [[39, "new-repo"]], "annex.thin Hardlinks ": [[39, "annex-thin-hardlinks"]], "version problems": [[39, "version-problems"]], "checking annex file locations": [[39, "checking-annex-file-locations"]], "\u201ca cosmetic problem affecting git status\u201d": [[39, "a-cosmetic-problem-affecting-git-status"]], "Resetting": [[39, "resetting"]], "rm: cannot remove": [[39, "rm-cannot-remove"]], "Image Processing Software": [[40, "image-processing-software"]], "Smoothing": [[40, "smoothing"]], "Gaussian Filter": [[40, "gaussian-filter"]], "Example:": [[40, "example"]], "Median Filter": [[40, "median-filter"]], "Intensity Correction": [[40, "intensity-correction"]], "N3 - Non-parametric Non-uniform Intensity Normalization": [[40, "n3-non-parametric-non-uniform-intensity-normalization"]], "N4": [[40, "n4"]], "Manual Segmentations": [[40, "manual-segmentations"]], "Advanced Normalization Tools (ANTs)": [[41, "advanced-normalization-tools-ants"]], "Parameters for antsRegistration": [[41, "parameters-for-antsregistration"]], "transform": [[41, "transform"]], "metric": [[41, "metric"]], "smoothing-sigmas": [[41, "smoothing-sigmas"]], "convergence": [[41, "convergence"]], "Visualizing Warping Field": [[41, "visualizing-warping-field"]], "Translation": [[41, "translation"]], "Restrict Gradient Deformation": [[41, "restrict-gradient-deformation"]], "Point-Set Expectation (PSE)": [[41, "point-set-expectation-pse"]], "Example": [[41, "example"]], "Affine-only point-match transformation": [[41, "affine-only-point-match-transformation"]], "Non-affine point-match transformation": [[41, "non-affine-point-match-transformation"]], "ITK Transform File": [[41, "itk-transform-file"]], "Anima": [[42, "anima"]], "Diffusion Simulator": [[43, "diffusion-simulator"]], "Recommendations ": [[43, "recommendations"]], "FreeSurfer": [[44, "freesurfer"]], "FSL": [[45, "fsl"], [65, "fsl"]], "FSLeyes": [[46, "fsleyes"]], "Introduction": [[46, "introduction"], [92, "introduction"]], "Installation ": [[46, "installation"]], "Running Remotely": [[46, "running-remotely"]], "Plugins": [[46, "plugins"]], "ITK-SNAP": [[47, "itk-snap"]], "Create a mesh out of a binary file ": [[47, "create-a-mesh-out-of-a-binary-file"]], "NIfTI": [[48, "nifti"]], "OpenNeuro CLI": [[49, "openneuro-cli"]], "Uninstall": [[49, "uninstall"]], "OsiriX": [[50, "osirix"]], "Straighten Spinal Cord ": [[50, "straighten-spinal-cord"]], "Manual Segmentation of the Spinal Cord ": [[50, "manual-segmentation-of-the-spinal-cord"]], "Various Software & Tools": [[51, "various-software-tools"]], "BitBucket": [[52, "bitbucket"]], "Docker": [[53, "docker"]], "Docker Terminology": [[53, "docker-terminology"]], "Using Docker": [[53, "using-docker"]], "Search for remote image": [[53, "search-for-remote-image"]], "Install & Run Linux distribution ": [[53, "install-run-linux-distribution"]], "List local Docker images ": [[53, "list-local-docker-images"]], "Run Docker image ": [[53, "run-docker-image"]], "Remove Docker image or containers (force deletion) ": [[53, "remove-docker-image-or-containers-force-deletion"]], "Save a Docker image ": [[53, "save-a-docker-image"]], "Build Docker container from Dockerfile ": [[53, "build-docker-container-from-dockerfile"]], "Run with DISPLAY redirection ": [[53, "run-with-display-redirection"]], "Copy file into container ": [[53, "copy-file-into-container"]], "Docker for Deep Learning": [[54, "docker-for-deep-learning"]], "Docker Environment ": [[54, "docker-environment"]], "NVIDIA Docker": [[54, "nvidia-docker"]], "Creating Containers": [[54, "creating-containers"]], "Exposing Container Ports": [[54, "exposing-container-ports"]], "Accessing Datasets (external volumes)": [[54, "accessing-datasets-external-volumes"]], "Dropbox": [[55, "dropbox"], [66, "dropbox"]], "Jekyll": [[56, "jekyll"]], "Microsoft Word": [[57, "microsoft-word"], [66, "microsoft-word"]], "Useful shortcuts for OSX ": [[57, "useful-shortcuts-for-osx"]], "How to always open a page with \u201cpage width\u201d view ": [[57, "how-to-always-open-a-page-with-page-width-view"]], "OpenNeuro": [[58, "openneuro"]], "Overview": [[58, "overview"], [83, "overview"]], "DataLad": [[58, "datalad"]], "AWS": [[58, "aws"]], "Download OpenNeuro Dataset": [[58, "download-openneuro-dataset"]], "Sketchup": [[59, "sketchup"]], "Virtual Machines": [[60, "virtual-machines"]], "Vagrant": [[61, "vagrant"]], "Installing ": [[61, "installing"]], "Getting Started & Basic Commands ": [[61, "getting-started-basic-commands"]], "SSH into Box ": [[61, "ssh-into-box"]], "Vagrantfile ": [[61, "vagrantfile"]], "Memory and CPU Settings ": [[61, "memory-and-cpu-settings"]], "Folder Settings ": [[61, "folder-settings"]], "Startup/Provision Settings ": [[61, "startup-provision-settings"]], "Running MacOS ": [[61, "running-macos"]], "Import a .ova file ": [[62, "import-a-ova-file"]], "Shared folder ": [[62, "shared-folder"]], "Using Guest Additions (recommended) ": [[62, "using-guest-additions-recommended"]], "Manual method ": [[62, "manual-method"]], "Create a Virtual Machine (VM) with Debian ": [[62, "create-a-virtual-machine-vm-with-debian"]], "Reduce the size of the VM ": [[62, "reduce-the-size-of-the-vm"]], "Install guest additions ": [[62, "install-guest-additions"]], "Ubuntu 14.04 ": [[62, "ubuntu-14-04"]], "XQuartz": [[63, "xquartz"]], "SSH": [[63, "ssh"]], "XQuartz Terminal": [[63, "xquartz-terminal"]], "OS Guides": [[64, "os-guides"]], "Automatic Mount on Startup": [[65, "automatic-mount-on-startup"]], "CentOS/Fedora/Red Hat": [[65, "centos-fedora-red-hat"]], "Ants & c3d": [[65, "ants-c3d"]], "Miniconda": [[65, "miniconda"]], "MacOSX": [[66, "macosx"]], "Booting Options": [[66, "booting-options"]], "Nice Software": [[66, "nice-software"]], "Global default config ": [[66, "global-default-config"]], "Maintenance": [[66, "maintenance"]], "Files and Folders": [[66, "files-and-folders"]], "Change Folder Icon ": [[66, "change-folder-icon"]], "Copy/Make a disk image from CD/DVD (ISO format) ": [[66, "copy-make-a-disk-image-from-cd-dvd-iso-format"]], "Recovery": [[66, "recovery"]], "Create recovery partition ": [[66, "create-recovery-partition"]], "Displays": [[66, "displays"]], "Lock screen ": [[66, "lock-screen"]], "Lock screen upon sleep ": [[66, "lock-screen-upon-sleep"]], "Notifications": [[66, "notifications"]], "Disable Notification Center ": [[66, "disable-notification-center"]], "Keyboard": [[66, "keyboard"]], "Dialog box: select option with Tab ": [[66, "dialog-box-select-option-with-tab"]], "Dock in 2d ": [[66, "dock-in-2d"]], "Make Hidden Applications Icons Transparent ": [[66, "make-hidden-applications-icons-transparent"]], "Set The Expanded Print Dialogue As Default ": [[66, "set-the-expanded-print-dialogue-as-default"]], "Reboot station with Terminal ": [[66, "reboot-station-with-terminal"]], "Set The Expanded Save Dialogue As Default ": [[66, "set-the-expanded-save-dialogue-as-default"]], "Screenshot in desired format ": [[66, "screenshot-in-desired-format"]], "Servers": [[66, "servers"]], "Software-specific": [[66, "software-specific"]], "MATLAB": [[66, "matlab"], [71, "matlab"]], "Automator": [[66, "automator"]], "FSL and FSLeyes": [[66, "fsl-and-fsleyes"]], "Launch fslview via double click": [[66, "launch-fslview-via-double-click"]], "generate dwi_mean in same folder": [[66, "generate-dwi-mean-in-same-folder"]], "Use a service": [[66, "use-a-service"]], "Chrome": [[66, "chrome"]], "Finder": [[66, "finder"]], "Image Capture": [[66, "image-capture"]], "Keynote": [[66, "keynote"]], "Papers": [[66, "papers"]], "Port Papers to another mac": [[66, "port-papers-to-another-mac"]], "Preview": [[66, "preview"]], "QuickLook": [[66, "quicklook"]], "Terminal": [[66, "terminal"]], "Let Terminal Talk": [[66, "let-terminal-talk"]], "display log": [[66, "display-log"]], "TextMate": [[66, "textmate"]], "mds_stores using high CPU load": [[66, "mds-stores-using-high-cpu-load"]], "Solution 1": [[66, "solution-1"], [66, "id1"]], "Solution 2": [[66, "solution-2"], [66, "id2"]], "Right-click sharing for Google Drive": [[66, "right-click-sharing-for-google-drive"]], "fslview opening out of screen": [[66, "fslview-opening-out-of-screen"]], "Archive Utility: Permanent loading": [[66, "archive-utility-permanent-loading"]], "Trash: Stuck when being emptied": [[66, "trash-stuck-when-being-emptied"]], "Error: \u201cdisk quota exceeded\u201d": [[66, "error-disk-quota-exceeded"]], "Cannot repair permission": [[66, "cannot-repair-permission"]], "Password prompts: \u201cFinder wants to make changes\u201d": [[66, "password-prompts-finder-wants-to-make-changes"]], "Solution 3": [[66, "solution-3"]], "Programming Languages": [[67, "programming-languages"]], "C++": [[68, "c"]], "Installation of VTK and ITK on Mac OS X": [[69, "installation-of-vtk-and-itk-on-mac-os-x"]], "Install VTK": [[69, "install-vtk"]], "Install ITK": [[69, "install-itk"]], "Installing VTK/ITK on Mac OSX 10.9": [[69, "installing-vtk-itk-on-mac-osx-10-9"]], "Example: Building ITK 4.6.1 on Mac OSX 10.9.5": [[69, "example-building-itk-4-6-1-on-mac-osx-10-9-5"]], "Fixing Installation Issues": [[69, "fixing-installation-issues"]], "Be prepared to use libraries": [[69, "be-prepared-to-use-libraries"]], "Using XCode": [[70, "using-xcode"]], "Creation of an XCode project linked with ITK and VTK": [[70, "creation-of-an-xcode-project-linked-with-itk-and-vtk"]], "1. Create a New Project": [[70, "create-a-new-project"]], "2. Edit Settings": [[70, "edit-settings"]], "Build Settings": [[70, "build-settings"]], "Build Phases": [[70, "build-phases"]], "3. Add Files": [[70, "add-files"]], "4. Set DYLD_LIBRARY_PATH": [[70, "set-dyld-library-path"]], "Distribution": [[70, "distribution"]], "How to use XCode toolchain as a non-admin user?": [[70, "how-to-use-xcode-toolchain-as-a-non-admin-user"]], "Figures": [[71, "figures"]], "Toolbox ": [[71, "toolbox"]], "Issues": [[71, "issues"]], "Yosemite Issue ": [[71, "yosemite-issue"]], "IDE": [[72, "ide"]], "Virtual Environments": [[72, "virtual-environments"]], "Packaging Code": [[72, "packaging-code"]], "Useful Packages": [[72, "useful-packages"]], "NeuroImaging": [[72, "neuroimaging"]], "Visualization": [[72, "visualization"]], "Courses and Tutorials": [[72, "courses-and-tutorials"]], "Nice Packages": [[72, "nice-packages"]], "Matplotlib": [[72, "matplotlib"]], "Useful links/Software": [[73, "useful-links-software"]], "Websites": [[73, "websites"]], "Services": [[73, "services"]], "\ud83d\udca1 Ideas for Cool Projects": [[74, "ideas-for-cool-projects"]], "Good Internship Projects (Public)": [[74, "good-internship-projects-public"]], "Internal projects (Private)": [[74, "internal-projects-private"]], "Spinal Cord Toolbox": [[74, "spinal-cord-toolbox"]], "Myelin Imaging": [[74, "myelin-imaging"]], "Acquisition": [[74, "acquisition"]], "Pulse Sequence Programming": [[74, "pulse-sequence-programming"]], "RF Coil": [[74, "rf-coil"]], "Shimming": [[74, "shimming"]], "Simulators": [[74, "simulators"]], "\ud83e\uddf2 MRI Scanning": [[75, "mri-scanning"]], "MRI facilities": [[75, "mri-facilities"]], "Book the scanner and log in the google calendar": [[75, "book-the-scanner-and-log-in-the-google-calendar"]], "Log book": [[75, "log-book"]], "Pay a participant?": [[75, "pay-a-participant"]], "\u200bEthics": [[75, "ethics"]], "MHI (7T Agilent)": [[76, "mhi-7t-agilent"]], "Technical Specifications": [[76, "technical-specifications"]], "Characteristics ": [[76, "characteristics"]], "305/210 HD Gradient Coil ": [[76, "hd-gradient-coil"]], "205/120 HD Gradient Coil ": [[76, "id1"]], "Coils ": [[76, "coils"]], "1H 140/184mm, 300MHz Quad Birdcage Coil ": [[76, "h-140-184mm-300mhz-quad-birdcage-coil"]], "1H 38/108mm, 300MHz Quad Birdcage Coil ": [[76, "h-38-108mm-300mhz-quad-birdcage-coil"]], "Wiki 7T Scanner ICM ": [[76, "wiki-7t-scanner-icm"]], "Data Collection": [[76, "data-collection"]], "Get Data": [[76, "get-data"]], "Standard Operating Procedure - Reconstructing RAW data MHI-7T": [[76, "standard-operating-procedure-reconstructing-raw-data-mhi-7t"]], "VnmrJ Station Credentials": [[76, "vnmrj-station-credentials"]], "MNI/McGill (7T Terra)": [[77, "mni-mcgill-7t-terra"]], "Book the scanner": [[77, "book-the-scanner"]], "Fill out the screening and consent forms": [[77, "fill-out-the-screening-and-consent-forms"]], "Download the data": [[77, "download-the-data"], [78, "download-the-data"]], "UNF (3T Prisma)": [[78, "unf-3t-prisma"]], "Booking the scanner": [[78, "booking-the-scanner"]], "Finding participants": [[78, "finding-participants"]], "Filling MRI eligibility form": [[78, "filling-mri-eligibility-form"]], "Access to UNF": [[78, "access-to-unf"]], "Reconstruct raw data": [[78, "reconstruct-raw-data"]], "\ud83d\udc4b Onboarding": [[79, "onboarding"]], "Campus Access": [[80, "campus-access"]], "Please advise one of the PIs before arriving for the first time on campus in order to organize the logistics together.": [[80, "please-advise-one-of-the-pis-before-arriving-for-the-first-time-on-campus-in-order-to-organize-the-logistics-together"]], "Campus Map": [[80, "campus-map"]], "Lab rooms at Polytechnique": [[80, "lab-rooms-at-polytechnique"]], "Desk/computer access": [[80, "desk-computer-access"]], "Affiliation with Mila": [[80, "affiliation-with-mila"]], "Requirements for room access": [[80, "requirements-for-room-access"]], "COVID-19 Protocol": [[80, "covid-19-protocol"]], "WiFi Access: Eduroam": [[80, "wifi-access-eduroam"]], "Computer Setup": [[81, "computer-setup"]], "\ud83d\udca1 Other configuration tips": [[82, "other-configuration-tips"]], "niftiviewer.app (MacOS) ": [[82, "niftiviewer-app-macos"]], "Add LINUX machine to GRAMES ": [[82, "add-linux-machine-to-grames"]], "Configure virtualenvwrapper under LINUX ": [[82, "configure-virtualenvwrapper-under-linux"]], "\ud83d\udcf6 Eduroam": [[83, "eduroam"]], "Setup": [[83, "setup"]], "Why do I need to use this tool? Why can\u2019t I just sign into the network directly?": [[83, "why-do-i-need-to-use-this-tool-why-can-t-i-just-sign-into-the-network-directly"]], "\ud83d\udce7 Email": [[84, "email"]], "Add PolyMTL email to the macOS Mail app": [[84, "add-polymtl-email-to-the-macos-mail-app"]], "\ud83d\udcbb Shell Profile": [[85, "shell-profile"]], "\ud83d\udde3 Slack": [[86, "slack"]], "Consultants and RA": [[87, "consultants-and-ra"]], "Consultant": [[87, "consultant"]], "Research Associates": [[87, "research-associates"]], "Google Drive": [[88, "google-drive"]], "Get help": [[89, "get-help"]], "Infrastructure": [[90, "infrastructure"]], "Computers": [[90, "computers"], [96, "computers"]], "Postdoctoral fellows": [[91, "postdoctoral-fellows"]], "Postdoctoral Association": [[91, "postdoctoral-association"]], "Postdoctoral Office": [[91, "postdoctoral-office"]], "Software development": [[92, "software-development"]], "Project-Specific Guidance": [[92, "project-specific-guidance"]], "Opening an Issue on GitHub": [[92, "opening-an-issue-on-github"]], "Issue Title": [[92, "issue-title"]], "Issue Body": [[92, "issue-body"]], "Issue Labels": [[92, "issue-labels"]], "Mandatory Labels": [[92, "mandatory-labels"]], "Optional (Recommended) Labels": [[92, "optional-recommended-labels"]], "Developing Code": [[92, "developing-code"]], "Opening a Branch": [[92, "opening-a-branch"]], "Branch Conflicts": [[92, "branch-conflicts"]], "Code Style": [[92, "code-style"]], "Documentation and Docstrings": [[92, "documentation-and-docstrings"]], "Testing": [[92, "testing"]], "Licensing": [[92, "licensing"]], "Commit Titles": [[92, "commit-titles"]], "Commit Sequences": [[92, "commit-sequences"]], "Submitting a Pull Request (PR)": [[92, "submitting-a-pull-request-pr"]], "PR Title": [[92, "pr-title"]], "PR Body": [[92, "pr-body"]], "PR Labels": [[92, "pr-labels"]], "Work in Progress": [[92, "work-in-progress"]], "Continuous Integration": [[92, "continuous-integration"]], "Reviewers": [[92, "reviewers"]], "Working on \u201cEpic\u201d Changes": [[92, "working-on-epic-changes"]], "Versioning": [[92, "versioning"]], "\ud83d\udcce Practical Information": [[93, "practical-information"]], "\ud83c\udde8\ud83c\udde6 Living in Montreal": [[94, "living-in-montreal"]], "\ud83c\udfe0 Accommodation": [[94, "accommodation"]], "Daily life": [[94, "daily-life"]], "\ud83c\udfe5 Medical": [[95, "medical"]], "Tele-medicine": [[95, "tele-medicine"]], "Emergency": [[95, "emergency"]], "Walk-in": [[95, "walk-in"]], "Public Walk-in public (incl. week-end)": [[95, "public-walk-in-public-incl-week-end"]], "Private walk-in (incl. week-end)": [[95, "private-walk-in-incl-week-end"]], "Find a Family Doctor": [[95, "find-a-family-doctor"]], "\ud83d\udee0 Purchasing Supplies": [[96, "purchasing-supplies"]], "RF Lab": [[96, "rf-lab"]], "Fixed Capacitors": [[96, "fixed-capacitors"]], "Connectors": [[96, "connectors"]], "Cables": [[96, "cables"]], "PCB": [[96, "pcb"]], "Rods": [[96, "rods"]], "Wet Lab": [[96, "wet-lab"]], "Phantoms": [[96, "phantoms"], [104, "phantoms"]], "Miscellaneous": [[96, "miscellaneous"]], "Pipe Connectors": [[96, "pipe-connectors"]], "Poster Tube": [[96, "poster-tube"]], "Reimbursements": [[96, "reimbursements"]], "\ud83c\udf0e VISAs and Work Permits": [[97, "visas-and-work-permits"]], "Internships": [[97, "internships"]], "Postdocs": [[97, "postdocs"]], "Other Links ": [[97, "other-links"]], "3D Printing": [[98, "d-printing"]], "3D Printer - Big Builder - Dual feed (RF lab)": [[98, "d-printer-big-builder-dual-feed-rf-lab"]], "Modix Big-60 V2 - Dual feed (RF lab)": [[98, "modix-big-60-v2-dual-feed-rf-lab"]], "Very small 3D printer (in technician\u2019s office)": [[98, "very-small-3d-printer-in-technician-s-office"]], "Small 3D printer (in Frederic Lesage\u2019s lab)": [[98, "small-3d-printer-in-frederic-lesage-s-lab"]], "OctoPrint": [[99, "octoprint"]], "OctoPrint Plugins": [[99, "octoprint-plugins"]], "\ud83d\udd27 RF Lab": [[100, "rf-lab"]], "CNC machine": [[101, "cnc-machine"]], "Genmitsu 3018-PROVer": [[101, "genmitsu-3018-prover"]], "Distilled Water": [[102, "distilled-water"]], "Non-magnetic connectors": [[102, "non-magnetic-connectors"]], "Gerber viewer for OSX": [[102, "gerber-viewer-for-osx"]], "USB to Serial adapter for spine shim coil (OSX El Capitan)": [[102, "usb-to-serial-adapter-for-spine-shim-coil-osx-el-capitan"]], "Parts manufacturing": [[102, "parts-manufacturing"]], "NeuroPoly Coils": [[103, "neuropoly-coils"]], "Useful Links": [[104, "useful-links"]], "Recipe from UNF": [[104, "recipe-from-unf"]], "Recipe from LIOM (used at ICM)": [[104, "recipe-from-liom-used-at-icm"]], "Recipe from Nibardo": [[104, "recipe-from-nibardo"]], "PCB Manufacturing": [[105, "pcb-manufacturing"]], "How to design PCB for PCBWAY ": [[105, "how-to-design-pcb-for-pcbway"]], "How to design PCB for Poly-Grames": [[105, "how-to-design-pcb-for-poly-grames"]], "\ud83d\udcb0 Scholarships": [[106, "scholarships"]], "Masters (MSc)": [[106, "masters-msc"]], "Doctorate (PhD)": [[106, "doctorate-phd"]], "Postdoctorate": [[106, "postdoctorate"]], "Travel awards": [[106, "travel-awards"]], "\u270d\ufe0f Academic Writing": [[107, "academic-writing"]], "Journals": [[107, "journals"]], "Neuroimaging": [[107, "neuroimaging"]], "Clinical": [[107, "clinical"]], "MRI / Coils": [[107, "mri-coils"]], "Organizing Folders": [[107, "organizing-folders"]], "Cover letter": [[107, "cover-letter"]], "Addressing Reviewer Comments": [[107, "addressing-reviewer-comments"]], "Managing References": [[107, "managing-references"]], "Install Paperpile": [[107, "install-paperpile"]], "Figures (in vectorial format)": [[107, "figures-in-vectorial-format"]], "Check grammar": [[107, "check-grammar"]], "Affiliations": [[107, "affiliations"]], "Acknowledgements": [[107, "acknowledgements"]], "Writing Platforms/Software": [[107, "writing-platforms-software"]], "Google Docs": [[107, "google-docs"]], "Overleaf": [[107, "overleaf"]], "Tips for writing scientific articles": [[107, "tips-for-writing-scientific-articles"]]}, "indexentries": {}})
\ No newline at end of file