actions.yml

name: CI

on:
  pull_request:
  push:
    branches: main
    tags: ['v*']
  workflow_dispatch:


jobs:
  tests:
    runs-on: ubuntu-latest
    steps:
    - name: Checkout Repository
      uses: actions/checkout@v2

    - name: Set up MicroMamba
      uses: mamba-org/setup-micromamba@v1
      with:
        environment-file: environment.yml
        condarc: |
          channels:
            - conda-forge
            - default
        cache-environment: true

    - name: Unit test with code coverage
      shell: bash -l {0}
      run: python -m pytest -vv --cov=postprocessing --cov=scripts --cov-report=xml --cov-report=term

    - name: Upload coverage reports to Codecov
      uses: codecov/codecov-action@v3
      env:
        CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}

  integration-tests:
    runs-on: ubuntu-latest
    needs: tests
    steps:
    - name: Checkout Repository
      uses: actions/checkout@v2

    - name: Set up MicroMamba
      uses: mamba-org/setup-micromamba@v1
      with:
        environment-file: environment.yml
        condarc: |
          channels:
            - conda-forge
            - default
        cache-environment: true

    - name: start docker containers
      run: docker-compose -f tests/integration/docker-compose.yml up --build -d

    - name: sleep to wait for containers to start up
      run: sleep 2

    - name: Run integration tests
      shell: bash -l {0}
      run: python -m pytest tests/integration

    - name: stop docker containers
      run: docker-compose -f tests/integration/docker-compose.yml down

  rpm:
    runs-on: ubuntu-latest

    steps:
    - name: Checkout Repository
      uses: actions/checkout@v2

    - name: Build RPM inside Docker
      run: |
        docker build --tag postprocess --target=package -f Dockerfile .
        fname=`docker run -v $(pwd):/store postprocess ls /root/rpmbuild/RPMS/noarch`
        docker run -v `pwd`:/store postprocess mv /root/rpmbuild/RPMS/noarch/$fname /store
        one=${fname#*postprocessing-}
        two=${one%.noarch*}
        echo "::set-output name=version::$two"
        echo "::set-output name=fname::$fname"
      continue-on-error: false

# TODO: uncomment this once we have switched to python3 and can conda install the module build
#  wheel:
#    runs-on: ubuntu-latest
#    steps:
#    - name: Checkout Repository
#      uses: actions/checkout@v2
#
#    - name: Set up MicroMamba
#      uses: mamba-org/setup-micromamba@v1
#      with:
#        environment-file: environment.yml
#        condarc: |
#          channels:
#            - conda-forge
#            - default
#        cache-environment: true
#
#    - name: Build wheel
#      shell: bash -l {0}
#      run: python -m build --wheel