From ef5a811e0c52b54c5bf3af4fc9e8644817d4ddbb Mon Sep 17 00:00:00 2001
From: Nicolas Vannieuwkerke <nicolas.vannieuwkerke@ugent.be>
Date: Mon, 4 Nov 2024 13:24:55 +0100
Subject: [PATCH] nf-test ci updates

---
 .github/workflows/ci.yml | 2 +-
 tests/nextflow.config    | 3 ++-
 2 files changed, 3 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 250fc3e4..118a4a21 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -67,7 +67,7 @@ jobs:
 
       - name: Run pipeline with test data
         run: |
-          $CONDA/bin/nf-test test --tag ${{ matrix.test }} --ci --junitxml=default.xml
+          $CONDA/bin/nf-test test --tag ${{ matrix.test }} --ci --only-changed --junitxml=default.xml
 
       - name: Publish Test Report
         uses: mikepenz/action-junit-report@v3
diff --git a/tests/nextflow.config b/tests/nextflow.config
index 1643f647..80312509 100644
--- a/tests/nextflow.config
+++ b/tests/nextflow.config
@@ -66,7 +66,8 @@ params {
     igenomes_ignore = true
     genomes_ignore = true
 
-    validationSchemaIgnoreParams     = 'genomes,igenomes_base,test_data,cram1,cram2,cram3,crai1,crai2,crai3,vcf1,vcf2,vcf3,tbi1,tbi2,tbi3,gvcf1,gvcf2,gvcf3,gtbi1,gtbi2,gtbi3,famvcf,famtbi,ped,bed,split1,split2,split3'
+    validationSchemaIgnoreParams     = 'genomes,igenomes_base,test_data,cram1,cram2,cram3,crai1,crai2,crai3,vcf1,vcf2,vcf3,tbi1,tbi2,tbi3,gvcf1,gvcf2,gvcf3,gtbi1,gtbi2,gtbi3,famvcf,famtbi,ped,bed,split1,split2,split3,modules_testdata_base_path'
+    modules_testdata_base_path = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/'
 }
 
 process {