From 7dcbbaceb6fc46243bce1a1c63ab1f1abfc7d63f Mon Sep 17 00:00:00 2001 From: DSchreyer Date: Mon, 26 Jun 2023 11:02:32 +0100 Subject: [PATCH] Collect fix -> Pipeline works again with all samples. Not only first sample --- workflows/circdna.nf | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/workflows/circdna.nf b/workflows/circdna.nf index d8e73704..6dd647e6 100644 --- a/workflows/circdna.nf +++ b/workflows/circdna.nf @@ -23,7 +23,7 @@ if (!(params.input_format == "FASTQ" | params.input_format == "BAM")) { } // Modify fasta channel to include meta data -ch_fasta_meta = ch_fasta.map{ it -> [[id:it[0].baseName], it] } +ch_fasta_meta = ch_fasta.map{ it -> [[id:it[0].baseName], it] }.collect() branch = params.circle_identifier.split(",") run_circexplorer2 = ("circexplorer2" in branch)