From 506a3d49317d13e5b79eab45a2b8fd630f01f35b Mon Sep 17 00:00:00 2001
From: Graeme Grimes <graeme.grimes@ed.ac.uk>
Date: Wed, 4 Dec 2024 15:41:23 +0000
Subject: [PATCH] Update rnaseq eddie.config

add process specific params for fastqc to deal with new modules use of Java memeory assignment via Xmx
---
 conf/pipeline/rnaseq/eddie.config | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/conf/pipeline/rnaseq/eddie.config b/conf/pipeline/rnaseq/eddie.config
index 3c8601ee8..435ec6dbd 100644
--- a/conf/pipeline/rnaseq/eddie.config
+++ b/conf/pipeline/rnaseq/eddie.config
@@ -3,4 +3,8 @@ process {
     withName: 'PICARD_MARKDUPLICATES|QUALIMAP_RNASEQ|FASTQC|BBMAP_BBSPLIT' {
         clusterOptions = { "-l h_vmem=${(task.memory + 4.GB).bytes / task.cpus}" }
     }
+    withName: "NFCORE_RNASEQ:RNASEQ:FASTQ_QC_TRIM_FILTER_SETSTRANDEDNESS:FASTQ_FASTQC_UMITOOLS_TRIMGALORE:FASTQC"{
+		cpus=5
+		memory=24.GB
+	}
 }