-
Notifications
You must be signed in to change notification settings - Fork 26
/
modules.json
145 lines (145 loc) · 6.61 KB
/
modules.json
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
{
"name": "nf-core/crisprseq",
"homePage": "https://github.com/nf-core/crisprseq",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"bowtie2/align": {
"branch": "master",
"git_sha": "0fe30831abbc2ed115e46e92330edf38f56edc3d",
"installed_by": ["modules"]
},
"bowtie2/build": {
"branch": "master",
"git_sha": "1fea64f5132a813ec97c1c6d3a74e0aee7142b6d",
"installed_by": ["modules"]
},
"bwa/index": {
"branch": "master",
"git_sha": "086fa66260595e123b0ea47a6512539b72a9afa3",
"installed_by": ["modules"]
},
"bwa/mem": {
"branch": "master",
"git_sha": "0c34b8159f62cde451c4ff249629c9d0a4f3f9c3",
"installed_by": ["modules"]
},
"cat/fastq": {
"branch": "master",
"git_sha": "4fc983ad0b30e6e32696fa7d980c76c7bfe1c03e",
"installed_by": ["modules"]
},
"crisprcleanr/normalize": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"],
"patch": "modules/nf-core/crisprcleanr/normalize/crisprcleanr-normalize.diff"
},
"cutadapt": {
"branch": "master",
"git_sha": "6618151ed69274863dc6fe6d2920afa90abaca1f",
"installed_by": ["modules"],
"patch": "modules/nf-core/cutadapt/cutadapt.diff"
},
"fastqc": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"mageck/count": {
"branch": "master",
"git_sha": "3fd600f14c03766f840acf29e1a6a1bc45d5c9a0",
"installed_by": ["modules"],
"patch": "modules/nf-core/mageck/count/mageck-count.diff"
},
"mageck/mle": {
"branch": "master",
"git_sha": "a179c03b8933e96cdf232e8de9addf5c83a05d24",
"installed_by": ["modules"],
"patch": "modules/nf-core/mageck/mle/mageck-mle.diff"
},
"mageck/test": {
"branch": "master",
"git_sha": "02ddbebcea3e0aad5ddd090d243e7ceb3ae2f063",
"installed_by": ["modules"],
"patch": "modules/nf-core/mageck/test/mageck-test.diff"
},
"medaka": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"],
"patch": "modules/nf-core/medaka/medaka.diff"
},
"minimap2/align": {
"branch": "master",
"git_sha": "72e277acfd9e61a9f1368eafb4a9e83f5bcaa9f5",
"installed_by": ["modules"],
"patch": "modules/nf-core/minimap2/align/minimap2-align.diff"
},
"minimap2/index": {
"branch": "master",
"git_sha": "72e277acfd9e61a9f1368eafb4a9e83f5bcaa9f5",
"installed_by": ["modules"]
},
"multiqc": {
"branch": "master",
"git_sha": "cf17ca47590cc578dfb47db1c2a44ef86f89976d",
"installed_by": ["modules"]
},
"pear": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"racon": {
"branch": "master",
"git_sha": "f5ed3ac0834b68e80a00a06a61d04ce8e896f275",
"installed_by": ["modules"],
"patch": "modules/nf-core/racon/racon.diff"
},
"samtools/index": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["modules"]
},
"seqtk/seq": {
"branch": "master",
"git_sha": "7f88aae93c69586c0789322b77743ee0ef469502",
"installed_by": ["modules"]
},
"vsearch/cluster": {
"branch": "master",
"git_sha": "d97b335eb448073c1b680710303c02a55f40c77c",
"installed_by": ["modules"],
"patch": "modules/nf-core/vsearch/cluster/vsearch-cluster.diff"
},
"vsearch/sort": {
"branch": "master",
"git_sha": "97cf4c4a37a8931e19ef728de92f930a366669f2",
"installed_by": ["modules"]
}
}
},
"subworkflows": {
"nf-core": {
"utils_nextflow_pipeline": {
"branch": "master",
"git_sha": "3aa0aec1d52d492fe241919f0c6100ebf0074082",
"installed_by": ["subworkflows"]
},
"utils_nfcore_pipeline": {
"branch": "master",
"git_sha": "1b6b9a3338d011367137808b49b923515080e3ba",
"installed_by": ["subworkflows"]
},
"utils_nfschema_plugin": {
"branch": "master",
"git_sha": "bbd5a41f4535a8defafe6080e00ea74c45f4f96c",
"installed_by": ["subworkflows"]
}
}
}
}
}
}