diff --git a/templates/template_fluteMLE.R b/templates/template_fluteMLE.R index 38abcdb..f13383e 100644 --- a/templates/template_fluteMLE.R +++ b/templates/template_fluteMLE.R @@ -7,10 +7,11 @@ # Required to fix corrupted cache from Singularity container library(BiocFileCache) bfc <- BiocFileCache("~/.cache/R/ExperimentHub") + library(ExperimentHub) res <- bfcquery(bfc, "experimenthub.index.rds", field="rname", exact=TRUE) bfcremove(bfc, rids=res\$rid) - library(ExperimentHub) eh = ExperimentHub() + Sys.setenv(BIOMART_CACHE=tempdir()) library(MAGeCKFlute) library(clusterProfiler)