diff --git a/modules/nf-core/last/train/main.nf b/modules/nf-core/last/train/main.nf index 259415a5578..dad722e99f9 100644 --- a/modules/nf-core/last/train/main.nf +++ b/modules/nf-core/last/train/main.nf @@ -32,15 +32,15 @@ process LAST_TRAIN { $fastx \\ > ${prefix}.train - echo "id\tsubstitution_percent_identity\tlast -t\tlast -a\tlast -A\tlast -b\tlast -B\tlast -S" > ${prefix}.train.tsv - printf "\$(basename ${prefix}.train .target.train)\t" >> ${prefix}.train.tsv - grep 'substitution percent identity' ${prefix}.train | tail -n 1 | awk '{print \$5}' | tr '\n' '\t' >> ${prefix}.train.tsv - grep 'last -t' ${prefix}.train | tail -n 1 | awk '{print \$2}' | sed -e 's/-t//' | tr '\n' '\t' >> ${prefix}.train.tsv - grep 'last -a' ${prefix}.train | tail -n 1 | awk '{print \$3}' | tr '\n' '\t' >> ${prefix}.train.tsv - grep 'last -A' ${prefix}.train | tail -n 1 | awk '{print \$3}' | tr '\n' '\t' >> ${prefix}.train.tsv - grep 'last -b' ${prefix}.train | tail -n 1 | awk '{print \$3}' | tr '\n' '\t' >> ${prefix}.train.tsv - grep 'last -B' ${prefix}.train | tail -n 1 | awk '{print \$3}' | tr '\n' '\t' >> ${prefix}.train.tsv - grep 'last -S' ${prefix}.train | tail -n 1 | awk '{print \$3}' >> ${prefix}.train.tsv + echo "id\tsubstitution_percent_identity\tlast -t\tlast -a\tlast -A\tlast -b\tlast -B\tlast -S" > ${prefix}.train.tsv + printf "\$(basename ${prefix}.train .target.train)\t" >> ${prefix}.train.tsv + grep 'substitution percent identity' ${prefix}.train | tail -n 1 | awk '{print \$5}' | tr '\\n' '\\t' >> ${prefix}.train.tsv + grep 'last -t' ${prefix}.train | tail -n 1 | awk '{print \$2}' | sed -e 's/-t//' | tr '\\n' '\\t' >> ${prefix}.train.tsv + grep 'last -a' ${prefix}.train | tail -n 1 | awk '{print \$3}' | tr '\\n' '\\t' >> ${prefix}.train.tsv + grep 'last -A' ${prefix}.train | tail -n 1 | awk '{print \$3}' | tr '\\n' '\\t' >> ${prefix}.train.tsv + grep 'last -b' ${prefix}.train | tail -n 1 | awk '{print \$3}' | tr '\\n' '\\t' >> ${prefix}.train.tsv + grep 'last -B' ${prefix}.train | tail -n 1 | awk '{print \$3}' | tr '\\n' '\\t' >> ${prefix}.train.tsv + grep 'last -S' ${prefix}.train | tail -n 1 | awk '{print \$3}' >> ${prefix}.train.tsv cat <<-END_VERSIONS > versions.yml "${task.process}": diff --git a/modules/nf-core/last/train/tests/main.nf.test.snap b/modules/nf-core/last/train/tests/main.nf.test.snap index db0a002dcfa..537efdbb2ec 100644 --- a/modules/nf-core/last/train/tests/main.nf.test.snap +++ b/modules/nf-core/last/train/tests/main.nf.test.snap @@ -74,7 +74,7 @@ ] ], "2": [ - "versions.yml:md5,c1f06f4162a8b4ee1b8094d967f6678d" + "versions.yml:md5,b2d4a4fce93a910c90768053127969b3" ], "multiqc": [ [ @@ -95,14 +95,14 @@ ] ], "versions": [ - "versions.yml:md5,c1f06f4162a8b4ee1b8094d967f6678d" + "versions.yml:md5,b2d4a4fce93a910c90768053127969b3" ] } ], "meta": { "nf-test": "0.9.2", - "nextflow": "24.10.3" + "nextflow": "24.10.4" }, - "timestamp": "2025-01-22T10:22:21.360808" + "timestamp": "2025-01-30T18:37:11.305733" } } \ No newline at end of file