diff --git a/.github/workflows/wave.yml b/.github/workflows/wave.yml index 7e860230828c..573538079ac9 100644 --- a/.github/workflows/wave.yml +++ b/.github/workflows/wave.yml @@ -82,52 +82,58 @@ jobs: --tower-workspace-id ${{ secrets.TOWER_WORKSPACE_ID }} \ --singularity - - uses: actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b # v4 - with: - distribution: "temurin" - java-version: "17" + # TODO Build from Dockerfiles - - uses: nf-core/setup-nextflow@v2 + # bump-versions: + # needs: gen-matrix + # name: bump-versions + # runs-on: ubuntu-latest + # steps: + # - uses: actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b # v4 + # with: + # distribution: "temurin" + # java-version: "17" + + # - uses: nf-core/setup-nextflow@v2 + + # - uses: nf-core/setup-nf-test@v1 + # with: + # version: ${{ env.NFTEST_VER }} + + # - name: Bump Snapshot Versions + # env: + # # NFT_DIFF: "pdiff" + # # NFT_DIFF_ARGS: "--line-numbers --width 120 --expand-tabs=2" + # SENTIEON_LICSRVR_IP: ${{ secrets.SENTIEON_LICSRVR_IP }} + # SENTIEON_AUTH_MECH: "GitHub Actions - token" + # run: | + # # use "docker_self_hosted" if it runs on self-hosted runner and matrix.profile=docker + # if [ "${{ matrix.profile }}" == "docker" ]; then + # PROFILE="docker_self_hosted" + # else + # PROFILE=${{ matrix.profile }} + # fi + + # NFT_WORKDIR=~ \ + # nf-test test \ + # --profile=${{ matrix.profile }} \ + # --tap=test.tap \ + # # --ci \ + # --verbose \ + # --only-changed \ + # # --shard ${{ matrix.shard }}/${{ env.TOTAL_SHARDS }} \ + # # --filter ${{ matrix.filter }} \ + # --follow-dependencies \ + # --tag version \ + # --update-snapshot + + # - name: Commit & push version bumps + # run: | + # git config user.email "core@nf-co.re" + # git config user.name "nf-core-bot" + # git config push.default upstream + # git add . + # git status + # git commit -m "[automated] Bump versions snapshot" + # git push - - uses: nf-core/setup-nf-test@v1 - with: - version: ${{ env.NFTEST_VER }} - - - name: Bump Snapshot Versions - env: - # NFT_DIFF: "pdiff" - # NFT_DIFF_ARGS: "--line-numbers --width 120 --expand-tabs=2" - SENTIEON_LICSRVR_IP: ${{ secrets.SENTIEON_LICSRVR_IP }} - SENTIEON_AUTH_MECH: "GitHub Actions - token" - run: | - # use "docker_self_hosted" if it runs on self-hosted runner and matrix.profile=docker - if [ "${{ matrix.profile }}" == "docker" ]; then - PROFILE="docker_self_hosted" - else - PROFILE=${{ matrix.profile }} - fi - - NFT_WORKDIR=~ \ - nf-test test \ - --profile=${{ matrix.profile }} \ - --tap=test.tap \ - # --ci \ - --verbose \ - --only-changed \ - # --shard ${{ matrix.shard }}/${{ env.TOTAL_SHARDS }} \ - # --filter ${{ matrix.filter }} \ - --follow-dependencies \ - --tag version \ - --update-snapshot - - - name: Commit & push version bumps - run: | - git config user.email "core@nf-co.re" - git config user.name "nf-core-bot" - git config push.default upstream - git add . - git status - git commit -m "[automated] Bump versions snapshot" - git push - - # TODO Build from Dockerfiles