diff --git a/nf-research-tools.jsonld b/nf-research-tools.jsonld index 85de3ed7..40ba7b35 100644 --- a/nf-research-tools.jsonld +++ b/nf-research-tools.jsonld @@ -41,16 +41,16 @@ "sms:required": "sms:false", "sms:requiresComponent": [ { - "@id": "bts:GeneticReagent" + "@id": "bts:GeneticReagentDetails" }, { - "@id": "bts:Antibody" + "@id": "bts:AntibodyDetails" }, { - "@id": "bts:CellLine" + "@id": "bts:CellLineDetails" }, { - "@id": "bts:AnimalModel" + "@id": "bts:AnimalModelDetails" } ], "sms:requiresDependency": [ @@ -355,32 +355,279 @@ "sms:validationRules": [] }, { - "@id": "bts:GeneticReagent", + "@id": "bts:GeneticReagentDetails", "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "GeneticReagent", + "rdfs:comment": "Genetic reagents.", + "rdfs:label": "GeneticReagentDetails", "rdfs:subClassOf": [ { - "@id": "bts:resourceType" + "@id": "bts:Thing" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Genetic Reagent", + "sms:displayName": "geneticReagentDetails", "sms:required": "sms:false", "sms:requiresDependency": [ + { + "@id": "bts:Component" + }, { "@id": "bts:geneticReagentId" + }, + { + "@id": "bts:insertName" + }, + { + "@id": "bts:insertEntrezId" + }, + { + "@id": "bts:gRNAshRNASequence" + }, + { + "@id": "bts:insertSize" + }, + { + "@id": "bts:insertSpecies" + }, + { + "@id": "bts:nTerminalTag" + }, + { + "@id": "bts:cTerminalTag" + }, + { + "@id": "bts:cloningMethod" + }, + { + "@id": "bts:5primeCloningSite" + }, + { + "@id": "bts:5primeSiteDestroyed" + }, + { + "@id": "bts:3primeCloningSite" + }, + { + "@id": "bts:3primeSiteDestroyed" + }, + { + "@id": "bts:promoter" + }, + { + "@id": "bts:5primer" + }, + { + "@id": "bts:3primer" + }, + { + "@id": "bts:vectorBackbone" + }, + { + "@id": "bts:vectorType" + }, + { + "@id": "bts:backboneSize" + }, + { + "@id": "bts:totalSize" + }, + { + "@id": "bts:bacterialResistance" + }, + { + "@id": "bts:selectableMarker" + }, + { + "@id": "bts:copyNumber" + }, + { + "@id": "bts:growthTemp" + }, + { + "@id": "bts:growthStrain" + }, + { + "@id": "bts:hazardous" } ], "sms:validationRules": [] }, { - "@id": "bts:Antibody", + "@id": "bts:AntibodyDetails", + "@type": "rdfs:Class", + "rdfs:comment": "A blood protein produced in response to and counteracting a specific antigen. Antibodies combine chemically with substances which the body recognizes as alien, such as bacteria, viruses, and foreign substances in the blood.", + "rdfs:label": "AntibodyDetails", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "antibodyDetails", + "sms:required": "sms:false", + "sms:requiresDependency": [ + { + "@id": "bts:Component" + }, + { + "@id": "bts:antibodyId" + }, + { + "@id": "bts:uniprotId" + }, + { + "@id": "bts:targetAntigen" + }, + { + "@id": "bts:clonality" + }, + { + "@id": "bts:cloneId" + }, + { + "@id": "bts:reactiveSpecies" + }, + { + "@id": "bts:conjugate" + }, + { + "@id": "bts:hostOrganism" + } + ], + "sms:validationRules": [] + }, + { + "@id": "bts:CellLineDetails", + "@type": "rdfs:Class", + "rdfs:comment": "A cell culture selected for uniformity from a cell population derived from a usually homogeneous tissue source (such as an organ).", + "rdfs:label": "CellLineDetails", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "cellLineDetails", + "sms:required": "sms:false", + "sms:requiresComponent": [ + { + "@id": "bts:Donor" + } + ], + "sms:requiresDependency": [ + { + "@id": "bts:Component" + }, + { + "@id": "bts:cellLineId" + }, + { + "@id": "bts:donorId" + }, + { + "@id": "bts:organ" + }, + { + "@id": "bts:tissue" + }, + { + "@id": "bts:cellLineCategory" + }, + { + "@id": "bts:originYear" + }, + { + "@id": "bts:strProfile" + }, + { + "@id": "bts:populationDoublingTime" + }, + { + "@id": "bts:resistance" + }, + { + "@id": "bts:contaminatedMisidentified" + }, + { + "@id": "bts:cellLineGeneticDisorder" + }, + { + "@id": "bts:cellLineManifestation" + } + ], + "sms:validationRules": [] + }, + { + "@id": "bts:AnimalModelDetails", + "@type": "rdfs:Class", + "rdfs:comment": "An animal sufficiently like humans in its anatomy, physiology, or response to a pathogen to be used in medical research in order to obtain results that can be extrapolated to human medicine.", + "rdfs:label": "AnimalModelDetails", + "rdfs:subClassOf": [ + { + "@id": "bts:Thing" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "animalModelDetails", + "sms:required": "sms:false", + "sms:requiresComponent": [ + { + "@id": "bts:Donor" + } + ], + "sms:requiresDependency": [ + { + "@id": "bts:Component" + }, + { + "@id": "bts:animalModelId" + }, + { + "@id": "bts:donorId" + }, + { + "@id": "bts:transplantationDonorId" + }, + { + "@id": "bts:animalState" + }, + { + "@id": "bts:backgroundStrain" + }, + { + "@id": "bts:backgroundSubstrain" + }, + { + "@id": "bts:strainNomenclature" + }, + { + "@id": "bts:generation" + }, + { + "@id": "bts:transplantationType" + }, + { + "@id": "bts:animalModelGeneticDisorder" + }, + { + "@id": "bts:animalModelOfManifestation" + } + ], + "sms:validationRules": [] + }, + { + "@id": "bts:AnimalModel", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "Antibody", + "rdfs:label": "AnimalModel", "rdfs:subClassOf": [ { "@id": "bts:resourceType" @@ -389,11 +636,11 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Antibody", + "sms:displayName": "Animal Model", "sms:required": "sms:false", "sms:requiresDependency": [ { - "@id": "bts:antibodyId" + "@id": "bts:animalModelId" } ], "sms:validationRules": [] @@ -421,10 +668,10 @@ "sms:validationRules": [] }, { - "@id": "bts:AnimalModel", + "@id": "bts:Antibody", "@type": "rdfs:Class", "rdfs:comment": "TBD", - "rdfs:label": "AnimalModel", + "rdfs:label": "Antibody", "rdfs:subClassOf": [ { "@id": "bts:resourceType" @@ -433,11 +680,33 @@ "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "Animal Model", + "sms:displayName": "Antibody", "sms:required": "sms:false", "sms:requiresDependency": [ { - "@id": "bts:animalModelId" + "@id": "bts:antibodyId" + } + ], + "sms:validationRules": [] + }, + { + "@id": "bts:GeneticReagent", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "GeneticReagent", + "rdfs:subClassOf": [ + { + "@id": "bts:resourceType" + } + ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Genetic Reagent", + "sms:required": "sms:false", + "sms:requiresDependency": [ + { + "@id": "bts:geneticReagentId" } ], "sms:validationRules": [] @@ -710,166 +979,66 @@ }, { "@id": "bts:Speciallicencingrestrictions(seevendorformoreinformation)", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Speciallicencingrestrictions(seevendorformoreinformation)", - "rdfs:subClassOf": [ - { - "@id": "bts:usageRequirements" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "special licencing restrictions (see vendor for more information)", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:Unknown", - "@type": "rdfs:Class", - "rdfs:comment": "TBD", - "rdfs:label": "Unknown", - "rdfs:subClassOf": [ - { - "@id": "bts:clonality" - }, - { - "@id": "bts:5primeSiteDestroyed" - }, - { - "@id": "bts:3primeSiteDestroyed" - }, - { - "@id": "bts:copyNumber" - }, - { - "@id": "bts:hazardous" - }, - { - "@id": "bts:hostOrganism" - }, - { - "@id": "bts:sex" - }, - { - "@id": "bts:cloningMethod" - }, - { - "@id": "bts:usageRequirements" - }, - { - "@id": "bts:mutationMethod" - }, - { - "@id": "bts:reactiveSpecies" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "Unknown", - "sms:required": "sms:false", - "sms:validationRules": [] - }, - { - "@id": "bts:GeneticReagentDetails", - "@type": "rdfs:Class", - "rdfs:comment": "Genetic reagents.", - "rdfs:label": "GeneticReagentDetails", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Speciallicencingrestrictions(seevendorformoreinformation)", "rdfs:subClassOf": [ { - "@id": "bts:Thing" + "@id": "bts:usageRequirements" } ], "schema:isPartOf": { "@id": "http://schema.biothings.io" }, - "sms:displayName": "geneticReagentDetails", + "sms:displayName": "special licencing restrictions (see vendor for more information)", "sms:required": "sms:false", - "sms:requiresDependency": [ - { - "@id": "bts:Component" - }, - { - "@id": "bts:geneticReagentId" - }, - { - "@id": "bts:insertName" - }, - { - "@id": "bts:insertEntrezId" - }, - { - "@id": "bts:gRNAshRNASequence" - }, - { - "@id": "bts:insertSize" - }, - { - "@id": "bts:insertSpecies" - }, - { - "@id": "bts:nTerminalTag" - }, - { - "@id": "bts:cTerminalTag" - }, - { - "@id": "bts:cloningMethod" - }, + "sms:validationRules": [] + }, + { + "@id": "bts:Unknown", + "@type": "rdfs:Class", + "rdfs:comment": "TBD", + "rdfs:label": "Unknown", + "rdfs:subClassOf": [ { - "@id": "bts:5primeCloningSite" + "@id": "bts:clonality" }, { "@id": "bts:5primeSiteDestroyed" }, - { - "@id": "bts:3primeCloningSite" - }, { "@id": "bts:3primeSiteDestroyed" }, { - "@id": "bts:promoter" - }, - { - "@id": "bts:5primer" - }, - { - "@id": "bts:3primer" - }, - { - "@id": "bts:vectorBackbone" - }, - { - "@id": "bts:vectorType" - }, - { - "@id": "bts:backboneSize" + "@id": "bts:copyNumber" }, { - "@id": "bts:totalSize" + "@id": "bts:hazardous" }, { - "@id": "bts:bacterialResistance" + "@id": "bts:hostOrganism" }, { - "@id": "bts:selectableMarker" + "@id": "bts:sex" }, { - "@id": "bts:copyNumber" + "@id": "bts:cloningMethod" }, { - "@id": "bts:growthTemp" + "@id": "bts:usageRequirements" }, { - "@id": "bts:growthStrain" + "@id": "bts:mutationMethod" }, { - "@id": "bts:hazardous" + "@id": "bts:reactiveSpecies" } ], + "schema:isPartOf": { + "@id": "http://schema.biothings.io" + }, + "sms:displayName": "Unknown", + "sms:required": "sms:false", "sms:validationRules": [] }, { @@ -5946,52 +6115,6 @@ "sms:required": "sms:false", "sms:validationRules": [] }, - { - "@id": "bts:AntibodyDetails", - "@type": "rdfs:Class", - "rdfs:comment": "A blood protein produced in response to and counteracting a specific antigen. Antibodies combine chemically with substances which the body recognizes as alien, such as bacteria, viruses, and foreign substances in the blood.", - "rdfs:label": "AntibodyDetails", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "antibodyDetails", - "sms:required": "sms:false", - "sms:requiresDependency": [ - { - "@id": "bts:Component" - }, - { - "@id": "bts:antibodyId" - }, - { - "@id": "bts:uniprotId" - }, - { - "@id": "bts:targetAntigen" - }, - { - "@id": "bts:clonality" - }, - { - "@id": "bts:cloneId" - }, - { - "@id": "bts:reactiveSpecies" - }, - { - "@id": "bts:conjugate" - }, - { - "@id": "bts:hostOrganism" - } - ], - "sms:validationRules": [] - }, { "@id": "bts:uniprotId", "@type": "rdf:Property", @@ -7291,69 +7414,6 @@ "sms:required": "sms:false", "sms:validationRules": [] }, - { - "@id": "bts:CellLineDetails", - "@type": "rdfs:Class", - "rdfs:comment": "A cell culture selected for uniformity from a cell population derived from a usually homogeneous tissue source (such as an organ).", - "rdfs:label": "CellLineDetails", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "cellLineDetails", - "sms:required": "sms:false", - "sms:requiresComponent": [ - { - "@id": "bts:Donor" - } - ], - "sms:requiresDependency": [ - { - "@id": "bts:Component" - }, - { - "@id": "bts:cellLineId" - }, - { - "@id": "bts:donorId" - }, - { - "@id": "bts:organ" - }, - { - "@id": "bts:tissue" - }, - { - "@id": "bts:cellLineCategory" - }, - { - "@id": "bts:originYear" - }, - { - "@id": "bts:strProfile" - }, - { - "@id": "bts:populationDoublingTime" - }, - { - "@id": "bts:resistance" - }, - { - "@id": "bts:contaminatedMisidentified" - }, - { - "@id": "bts:cellLineGeneticDisorder" - }, - { - "@id": "bts:cellLineManifestation" - } - ], - "sms:validationRules": [] - }, { "@id": "bts:organ", "@type": "rdf:Property", @@ -10347,66 +10407,6 @@ "sms:required": "sms:false", "sms:validationRules": [] }, - { - "@id": "bts:AnimalModelDetails", - "@type": "rdfs:Class", - "rdfs:comment": "An animal sufficiently like humans in its anatomy, physiology, or response to a pathogen to be used in medical research in order to obtain results that can be extrapolated to human medicine.", - "rdfs:label": "AnimalModelDetails", - "rdfs:subClassOf": [ - { - "@id": "bts:Thing" - } - ], - "schema:isPartOf": { - "@id": "http://schema.biothings.io" - }, - "sms:displayName": "animalModelDetails", - "sms:required": "sms:false", - "sms:requiresComponent": [ - { - "@id": "bts:Donor" - } - ], - "sms:requiresDependency": [ - { - "@id": "bts:Component" - }, - { - "@id": "bts:animalModelId" - }, - { - "@id": "bts:donorId" - }, - { - "@id": "bts:transplantationDonorId" - }, - { - "@id": "bts:animalState" - }, - { - "@id": "bts:backgroundStrain" - }, - { - "@id": "bts:backgroundSubstrain" - }, - { - "@id": "bts:strainNomenclature" - }, - { - "@id": "bts:generation" - }, - { - "@id": "bts:transplantationType" - }, - { - "@id": "bts:animalModelGeneticDisorder" - }, - { - "@id": "bts:animalModelOfManifestation" - } - ], - "sms:validationRules": [] - }, { "@id": "bts:animalState", "@type": "rdf:Property",