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How to review a datapackage
Marisa Lim edited this page Mar 1, 2021
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- Go to https://app.nih-cfde.org/ and click "Log In" (top right corner).
- Click your name and "My Profile" (top right corner). Check that under "Groups" it says you're a Reviewer for your DCC.
- Click on “Data Review” tab at top of page to open “Submitted Datapackage” page.
- You should see a table with 3 columns: View, Submission, and Status Summary. The status of your data package is in the "Status Summary" column by "Ingest Status".
- To view a table with the number of items submitted during data ingestion (number of files, biosamples, subjects, etc.), click on the document icon in the "View" column to "View Details".
- To view how users will see your metadata in the portal, in the "Status Summary" column, click "Browse Data". Use the search bar and Refine search side panel to review how search results will look. For help using the browser, click on "User Guide" at the top of the page. This will take you to portal guide documentation pages.
- To view a graphical summary of your metadata in the portal, in the "Status Summary" column, click "Summary Charts". This will take you to a page with a dynamic bar plot. Use the dropdown menus to change the axes and stack by variables.
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Tutorials
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C2M2 Table Guide
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Table Summary
- analysis_type.tsv
- anatomy.tsv
- assay_type.tsv
- biosample.tsv
- biosample_disease.tsv
- biosample_from_subject.tsv
- biosample_gene.tsv
- biosample_in_collection.tsv
- biosample_substance.tsv
- collection.tsv
- collection_anatomy.tsv
- collection_compound.tsv
- collection_defined_by_project.tsv
- collection_disease.tsv
- collection_gene.tsv
- collection_in_collection.tsv
- collection_phenotype.tsv
- collection_protein.tsv
- collection_substance.tsv
- collection_taxonomy.tsv
- compound.tsv
- data_type.tsv
- dcc.tsv (formerly
primary_dcc_contact.tsv
- disease.tsv
- file.tsv
- file_describes_biosample.tsv
- file_describes_collection.tsv
- file_describes_subject.tsv
- file_format.tsv
- file_in_collection.tsv
- gene.tsv
- id_namespace.tsv
- ncbi_taxonomy.tsv
- phenotype.tsv
- phenotype_disease.tsv
- phenotype_gene.tsv
- project.tsv
- project_in_project.tsv
- protein.tsv
- protein_gene.tsv
- subject.tsv
- subject_disease.tsv
- subject_in_collection.tsv
- subject_phenotype.tsv
- subject_race.tsv
- subject_role_taxonomy.tsv
- subject_substance.tsv
- substance.tsv
- Reference Tables
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Table Summary