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TableInfo: anatomy.tsv

Amanda Charbonneau edited this page Mar 4, 2021 · 15 revisions

This table does not need to be manually created (but it can be). Users can build the rest of their data package and then use the CFDE Helper script to automatically build this table from the completed tables.

The anatomy.tsv table should have as many rows as you have unique Uberon IDs in the anatomy column of biosample.tsv

Field Field Description Required? Attributes Extra Info
id An Uberon CV term Required Value must be a valid UBERON ID UBERON lookup service
Example valid UBERON IDs: UBERON:0001988, UBERON:0001052, UBERON:0006956
name A short, human-readable, machine-read-friendly label for this Uberon term Non-required: Any number of rows after the header can be filled Value type is string
description A human-readable description of this Uberon term Non-required: Any number of rows after the header can be filled Value type is string
synonyms Pipe-separated list of synonyms (alternate Uberon terms) equivalent to this Uberon term Non-required: Any number of rows after the header can be filled Value must be valid UBERON ID(s) separated by | characters UBERON lookup service
Example valid UBERON IDs: UBERON:0001988, UBERON:0001052, UBERON:0006956
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