-
Notifications
You must be signed in to change notification settings - Fork 7
TableInfo: collection_defined_by_project.tsv
Amanda Charbonneau edited this page Mar 4, 2021
·
12 revisions
If you have populated collection.tsv you must assign those collections to projects
collection_defined_by_project table will contain one row per collection in collection.tsv
Field | Field Description | Required? | Attributes | Extra Info |
---|---|---|---|---|
collection_id_namespace | ID of the identifier namespace corresponding to the top-level C2M2 metadataset containing this collection | Required if table is populated | Value type is string | For each row (each collection), this will be the value of 'id_namespace' in collection.tsv for this collection. If your program has not implemented multiple id_namespaces, this will be exactly the same for all rows of this column and the the project_id_namespace column |
collection_local_id | The ID of this collection | Required if table is populated | Value type is string | For each row (each collection), this will be the value of 'local_id' in collection.tsv for this biosample |
project_id_namespace | ID of the identifier namespace corresponding to the top-level C2M2 metadataset containing this project | Required if table is populated | Value type is string | For each row (each collection), this will be the value of 'id_namespace' in the project table for the project this collection belongs to. If your program has not implemented multiple id_namespaces, this will be exactly the same for all rows in this column and the collection_id_namespace column |
project_local_id | The ID of this project | Required if table is populated | Value type is string | For each row (each collection), this will be the value of 'local_id' in the project table for the project this collection belongs to. If a biosample should be part of multiple collections, it should have multiple rows. Concatenating values in this column will invalidate your submission |
-
Tutorials
-
C2M2 Table Guide
-
Table Summary
- analysis_type.tsv
- anatomy.tsv
- assay_type.tsv
- biosample.tsv
- biosample_disease.tsv
- biosample_from_subject.tsv
- biosample_gene.tsv
- biosample_in_collection.tsv
- biosample_substance.tsv
- collection.tsv
- collection_anatomy.tsv
- collection_compound.tsv
- collection_defined_by_project.tsv
- collection_disease.tsv
- collection_gene.tsv
- collection_in_collection.tsv
- collection_phenotype.tsv
- collection_protein.tsv
- collection_substance.tsv
- collection_taxonomy.tsv
- compound.tsv
- data_type.tsv
- dcc.tsv (formerly
primary_dcc_contact.tsv
- disease.tsv
- file.tsv
- file_describes_biosample.tsv
- file_describes_collection.tsv
- file_describes_subject.tsv
- file_format.tsv
- file_in_collection.tsv
- gene.tsv
- id_namespace.tsv
- ncbi_taxonomy.tsv
- phenotype.tsv
- phenotype_disease.tsv
- phenotype_gene.tsv
- project.tsv
- project_in_project.tsv
- protein.tsv
- protein_gene.tsv
- subject.tsv
- subject_disease.tsv
- subject_in_collection.tsv
- subject_phenotype.tsv
- subject_race.tsv
- subject_role_taxonomy.tsv
- subject_substance.tsv
- substance.tsv
- Reference Tables
-
Table Summary