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TableInfo: collection_defined_by_project.tsv

Amanda Charbonneau edited this page Mar 4, 2021 · 12 revisions

If you have populated collection.tsv you must assign those collections to projects

collection_defined_by_project table will contain one row per collection in collection.tsv

Field Field Description Required? Attributes Extra Info
collection_id_namespace ID of the identifier namespace corresponding to the top-level C2M2 metadataset containing this collection Required if table is populated Value type is string For each row (each collection), this will be the value of 'id_namespace' in collection.tsv for this collection. If your program has not implemented multiple id_namespaces, this will be exactly the same for all rows of this column and the the project_id_namespace column
collection_local_id The ID of this collection Required if table is populated Value type is string For each row (each collection), this will be the value of 'local_id' in collection.tsv for this biosample
project_id_namespace ID of the identifier namespace corresponding to the top-level C2M2 metadataset containing this project Required if table is populated Value type is string For each row (each collection), this will be the value of 'id_namespace' in the project table for the project this collection belongs to. If your program has not implemented multiple id_namespaces, this will be exactly the same for all rows in this column and the collection_id_namespace column
project_local_id The ID of this project Required if table is populated Value type is string For each row (each collection), this will be the value of 'local_id' in the project table for the project this collection belongs to. If a biosample should be part of multiple collections, it should have multiple rows. Concatenating values in this column will invalidate your submission
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