Question on Experimental Design #453
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ACharbonneau
josesanchez1815
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RNA - Seq
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When looking at someone else’s data, say from GEO, do you have recommendations on how to gauge whether the experiment design is good or not? Are there rules or is it mostly qualitative? |
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Answered by
ACharbonneau
Jul 27, 2021
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I don't know of any set of good rules. In general, I'd look for blocking metadata at a datapoint level and detailed protocol information. If they don't give you information like lanes, or prep details for sequencing, or if they only report ranges for metadata it's going to be very hard to reuse. |
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I don't know of any set of good rules. In general, I'd look for blocking metadata at a datapoint level and detailed protocol information. If they don't give you information like lanes, or prep details for sequencing, or if they only report ranges for metadata it's going to be very hard to reuse.