diff --git a/.readthedocs.yml b/.readthedocs.yml index a2a1dc42a..2f6e84186 100644 --- a/.readthedocs.yml +++ b/.readthedocs.yml @@ -3,7 +3,9 @@ version: 2 build: os: ubuntu-22.04 tools: - python: "3.10" + python: "3.11" + apt_packages: + - graphviz jobs: post_checkout: - git fetch --unshallow @@ -14,3 +16,4 @@ python: - path: . extra_requirements: - doc + - path: wrapper/ diff --git a/docs/outputs.rst b/docs/outputs.rst index 9df8a4acd..cdd1c6e26 100644 --- a/docs/outputs.rst +++ b/docs/outputs.rst @@ -628,19 +628,10 @@ the following invocation:: A multi-modal parcellation of human cerebral cortex. Nature. 2016. doi:`10.1038/nature18933 `_ - .. [Hallquist2013] Hallquist MN, Hwang K, Luna B. The Nuisance of Nuisance Regression. - NeuroImage. 2013. doi:`10.1016/j.neuroimage.2013.05.116 - `_ - .. [Jenkinson2002] Jenkinson M, Bannister P, Brady M, Smith S. Improved optimization for the robust and accurate linear registration and motion correction of brain images. Neuroimage. 2002. doi:`10.1016/s1053-8119(02)91132-8 `__. - .. [Lindquist2019] Lindquist, MA, Geuter, S, and Wager, TD, Caffo, BS, - Modular preprocessing pipelines can reintroduce artifacts into fMRI data. - Human Brain Mapping. 2019. doi: `10.1002/hbm.24528 - `_ - .. [Muschelli2014] Muschelli J, Nebel MB, Caffo BS, Barber AD, Pekar JJ, Mostofsky SH, Reduction of motion-related artifacts in resting state fMRI using aCompCor. NeuroImage. 2014. doi:`10.1016/j.neuroimage.2014.03.028 `_ diff --git a/pyproject.toml b/pyproject.toml index 6c5b14202..1f08022a4 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -52,7 +52,7 @@ NiPreps = "https://www.nipreps.org/" [project.optional-dependencies] doc = [ "pydot >= 1.2.3", - "sphinx >= 1.8", + "sphinx >= 5", "sphinx-argparse", "sphinx_rtd_theme>=0.5.2", ]