From 9ebb61e46fd86eb90e61bcbe75532b4c0a46263a Mon Sep 17 00:00:00 2001 From: Oscar Esteban Date: Fri, 10 Mar 2023 21:09:17 +0100 Subject: [PATCH] rel(23.0.0): update CHANGES [skip ci] --- CHANGES.rst | 74 ++++++++++++++++++++++++++++++++++++++++++++++++----- 1 file changed, 67 insertions(+), 7 deletions(-) diff --git a/CHANGES.rst b/CHANGES.rst index 819a06b06..526300415 100644 --- a/CHANGES.rst +++ b/CHANGES.rst @@ -1,10 +1,26 @@ -23.0.0 (TBD) -============ -A new series, mostly involving maintenance housekeeping, and including some relevant bugfixes. -Probably, the most relevant is **the optimization of the indexing** of the input BIDS folder, +23.0.0 (March 10, 2023) +======================= +The new 23.0.x series include several prominent changes. +Visualization has been migrated from *MRIQC* and *niworkflows* over to the new *NiReports* project. +This series include a major bugfix with **the optimization of the indexing** of the input BIDS folder, which was taking large times with sizeable datasets. -Another relevant addition is inclusion of telemetry with *migas*. +Telemetry has also been incorporated with *migas*. +These new series also involve maintenance housekeeping, and includes some relevant bugfixes. +New contributors +---------------- + +* `@arokem `__ made their first contribution in `#1040 `__ +* `@yarikoptic `__ made their first contribution in `#1057 `__ +* `@esavary `__ made their first contribution in `#1047 `__ + +CHANGES +------- +**Full Changelog**: https://github.com/nipreps/mriqc/compare/22.0.6...23.0.0 + +* FIX: Send metadata extraction to workers (functional workflow) (#1081) +* FIX: Plot coronal as main plain for mosaic of rodent images (#1027) +* FIX: Address non-empty take from empty axes (anatomical IQMs) (#1077) * FIX: Uniformize building workflow message (anat vs. func) (#1072) * FIX: Move telemetry atexit into entrypoint func (#1067) * FIX: Preempt PyBIDS to spend time indexing non-BIDS folders (#1050) @@ -13,18 +29,62 @@ Another relevant addition is inclusion of telemetry with *migas*. * ENH: Add DataLad getter to inputs of functional workflows (#1071) * ENH: Add migas telemetry (#1036) * ENH: Add codespell automation: config, action, and typos fixed (#1057) -* MAINT: Conclude porting of reportlets into NiReports (#1068) +* MAINT: Update *NiReports* calls to upcoming interfaces API (#1078) +* MAINT: Pacify codespell (#1080) +* MAINT: Conclude porting of reportlets into *NiReports* (#1068) * MAINT: Migrate to hatchling (#1070) * MAINT: Pin PyBIDS 0.15.6 (culminating #1050) (#1069) * MAINT: Update niworkflows pin to support newer ANTs releases (#1047) * MAINT: Fix minor aspects of WebAPI deployment on CircleCI (#1064) -* MAINT: Add McKenzie to the maintainers table (#1059) * MAINT: Update CircleCI executor and use built-in docker-compose (#1061) * MAINT: Rotate CircleCI secrets and setup up org-level context (#1046) * DOC: Update documentation with the new carpet plot (#1045) * DOC: Complete the documentation of ``summary_stats()`` (#1044) * DOC: Fixes a couple of broken links to the *nipype* documentation (#1040) +.. admonition:: Author list for papers based on *MRIQC* 23.0 series + + As described in the `Contributor Guidelines + `__, + anyone listed as developer or contributor may write and submit manuscripts + about *MRIQC*. + To do so, please move the author(s) name(s) to the front of the following list: + + Zvi Baratz \ :sup:`1`\ ; Christopher J. Markiewicz \ :sup:`2`\ ; Eilidh MacNicol \ :sup:`3`\ ; Dylan Nielson \ :sup:`4`\ ; Jan Varada \ :sup:`5`\ ; Ross W. Blair \ :sup:`2`\ ; Céline Provins \ :sup:`6`\ ; William Triplett \ :sup:`7`\ ; Mathias Goncalves \ :sup:`2`\ ; Nikita Beliy \ :sup:`8`\ ; John A. Lee \ :sup:`9`\ ; Ursula A. Tooley \ :sup:`10`\ ; James D. Kent \ :sup:`11`\ ; Yaroslav O. Halchenko \ :sup:`12`\ ; Bennet Fauber \ :sup:`13`\ ; Taylor Salo \ :sup:`14`\ ; Michael Krause \ :sup:`15`\ ; Pablo Velasco \ :sup:`16`\ ; Thomas Nichols \ :sup:`17`\ ; Adam Huffman \ :sup:`18`\ ; Johannes Achtzehn \ :sup:`19`\ ; Joke Durnez \ :sup:`2`\ ; Satrajit S. Ghosh \ :sup:`20`\ ; Asier Erramuzpe \ :sup:`21`\ ; Benjamin Kay \ :sup:`22`\ ; Daniel Birman \ :sup:`2`\ ; Elodie Savary \ :sup:`23`\ ; McKenzie P. Hagen \ :sup:`24`\ ; Michael G. Clark \ :sup:`25`\ ; Patrick Sadil \ :sup:`26`\ ; Rafael Garcia-Dias \ :sup:`27`\ ; Adam G. Thomas \ :sup:`28`\ ; Russell A. Poldrack \ :sup:`2`\ ; Ariel Rokem \ :sup:`29`\ ; Oscar Esteban \ :sup:`30`\ . + + Affiliations: + + 1. Sagol School of Neuroscience, Tel Aviv University, Tel Aviv, Israel + 2. Department of Psychology, Stanford University, CA, USA + 3. Department of Neuroimaging, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, UK + 4. Section on Clinical and Computational Psychiatry, National Institute of Mental Health, Bethesda, MD, USA + 5. Functional MRI Facility, National Institute of Mental Health, Bethesda, MD, USA + 6. Lausanne University Hospital and University of Lausanne, Lausanne, Switzerland + 7. University of Florida: Gainesville, Florida, US + 8. CRC ULiege, Liege, Belgium + 9. Quansight, Dublin, Ireland + 10. Department of Neuroscience, University of Pennsylvania, PA, USA + 11. Department of Psychology, University of Texas at Austin, TX, USA + 12. Psychological and Brain Sciences Department, Dartmouth College, NH, USA + 13. University of Michigan, Ann Arbor, USA + 14. Department of Psychology, Florida International University, FL, USA + 15. Max Planck Institute for Human Development, Berlin, Germany + 16. Center for Brain Imaging, New York University, NY, USA + 17. Oxford Big Data Institute, University of Oxford, Oxford, GB + 18. Department of Physics, Imperial College London, London, UK + 19. Charité Berlin, Berlin, Germany + 20. McGovern Institute for Brain Research, MIT, MA, USA; and Department of Otolaryngology, Harvard Medical School, MA, USA + 21. Computational Neuroimaging Lab, BioCruces Health Research Institute + 22. Washington University School of Medicine, St.Louis, MO, USA + 23. Department of Radiology, Lausanne University Hospital and University of Lausanne, Switzerland + 24. Psychology Department, University of Washington, Seattle, WA, USA + 25. National Institutes of Health, USA + 26. Johns Hopkins Bloomberg School of Public Health, MD, USA + 27. Institute of Psychiatry, Psychology & Neuroscience, King's College London, London, UK + 28. Data Science and Sharing Team, National Institute of Mental Health, Bethesda, MD, USA + 29. The University of Washington eScience Institute, WA, USA + 30. Department of Radiology, Lausanne University Hospital and University of Lausanne + 22.0.6 (August 24, 2022) ======================== A hotfix release partially rolling-back the previous fix #1025.