thesis.tex

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% Make sure your LaTeX files are put under the root of your work directory. They should not be in a subfolder!

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Your information here
% !IMPORTANT!
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\newcommand{\thesisType}{Dissertation} % Dissertation for PhD and Thesis for Master
\newcommand{\thesisTitle}{Development of Machine Learning Potentials for Biochemical Systems} % your thesis/dissertation title, e.g., How to Write A Thesis
\newcommand{\yourName}{Jinzhe Zeng} % your name, e.g., Tim Cook
\newcommand{\yourDegree}{Doctor of Philosophy} % your degree to be obtained, e.g., Master of Science, Doctor of Philosophy
\newcommand{\yourProgram}{Chemistry} %insert your graduate program’s official name
\newcommand{\yourDirectorTitle}{Prof.} % the title of your thesis director
\newcommand{\yourDirector}{Darrin M. York} % your thesis director name here, his/her title not included
\newcommand{\yourCommitteeNumber}{4} % IMPORTANT! the number of the committee members for your defense
\newcommand{\yourMonth}{Jan} % your graduation month, not your defense month
\newcommand{\yourYear}{2025} % your graduation year


\bibliography{references,tmplib}

% document body
\begin{document}
% \doublespacing  %set line spacing

\input{copyright}

\makeTitlePage{Month}{Year}

\begin{frontmatter}
    \input{abstract}
    \input{acknowledgments}
    \input{publications.tex}
    \makeDedication{To DeepModeling open-source community}
    \makeTOC
    \makeListOfTables
    \makeListOfFigures
    %\input{abbrevs}
\end{frontmatter}

\begin{thesisbody}
    \input{chapters/introduction}
    \input{chapters/background}
    \input{chapters/dprc}
    \input{chapters/qdpv1}
    \input{chapters/semiempirical}
    \input{chapters/deepmd-kit}
    \input{chapters/dataset}
    \input{chapters/gnn}
    \makeBibliography
    \begin{theappendices}
      \input{chapters/dprc-si}
      \input{chapters/qdpv1-si}
    \end{theappendices}
\end{thesisbody}

\end{document}