index.rst

OBiBa Opal Documentation

Targeted at individual studies and study consortia, OBiBa software stack (Opal, Mica etc.) provides a software solution for epidemiological data management, analysis and publication. Opal is the core data warehouse application that provides all the necessary tools to import, transform and describe data. Opal can be used with Agate, the OBiBa's central authentication server.

.. toctree::
   :maxdepth: 2

   introduction

.. toctree::
   :maxdepth: 1
   :caption: Administrator Guide

   admin/installation
   admin/configuration
   admin/plugins
   admin/rserver

.. toctree::
   :maxdepth: 1
   :caption: Cookbook

   cookbook/index
   cookbook/import-data
   cookbook/r-datashield

.. toctree::
   :maxdepth: 1
   :caption: Web User Guide

   web-user-guide/index
   web-user-guide/projects
   web-user-guide/search
   web-user-guide/administration
   web-user-guide/my-profile
   web-user-guide/permissions

.. toctree::
   :maxdepth: 1
   :caption: R DataSHIELD User Guide

   r-user-guide/index
   r-user-guide/r
   r-user-guide/datashield

.. toctree::
   :maxdepth: 1
   :caption: Python User Guide

   python-user-guide/index
   python-user-guide/api
   python-user-guide/commands

.. toctree::
  :maxdepth: 1
  :caption: Magma Javascript API

  magma-user-guide/index
  magma-user-guide/methods

Partners and Funders

The development of this application was made possible thanks to the support of our partners and funders:

Support

Please visit OBiBa support page.