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EFO-OBA alignment umbrella ticket #162

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rays22 opened this issue Oct 27, 2022 · 8 comments
Open
1 task done

EFO-OBA alignment umbrella ticket #162

rays22 opened this issue Oct 27, 2022 · 8 comments
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@rays22 @ar-ibrahim
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@rays22
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rays22 commented Oct 27, 2022 •
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This is an umbrella ticket for the alignment of EFO measurement/trait terms with OBA terms

The focus of this ticket is the table oba-efo-unreviewed.dosdp.tsv.
The goal is to map the EFO terms in this table to OBA terms.

  • If an appropriate OBA terms exists, then update the OBA-EFO SSSOM mapping file.
  • If an appropriate OBA term does not exist, then create a new OBA term.

Link any tickets related to mapping the EFO terms in oba-efo-unreviewed.dosdp.tsv to this ticket.

To avoid duplication of effort, please specify the PATO quality for the group of terms that you are working on.
For example:

See also #101
This was referenced Nov 23, 2022
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rays22 commented Feb 3, 2023

I am doing 'sleep' related traits in oba-efo-unreviewed.dosdp.tsv in #209:

subject_id subject_label match_type quality quality_label attribute attribute_label
EFO:0005273 sleep depth Lexical PATO:0001595 depth GO:0030431 sleep
EFO:0004870 sleep measurement Lexical PATO:0000001 quality GO:0030431 sleep
EFO:0005274 sleep time Lexical PATO:0000165 time GO:0030431 sleep
EFO:0007817 sleep apnea measurement Lexical PATO:0000001 quality GO:0030431 sleep
EFO:0008455 sleep apnea measurement during REM sleep Lexical PATO:0000001 quality GO:0030431 sleep
EFO:0004807 short sleep Lexical PATO:0000574 short GO:0030431 sleep
EFO:0008456 sleep apnea measurement during non-REM sleep Lexical PATO:0000001 quality GO:0030431 sleep
EFO:0005272 sleep quality Lexical PATO:0000001 quality GO:0030431 sleep
EFO:0005271 sleep duration Lexical PATO:0001309 duration GO:0030431 sleep
EFO:0005280 sleep latency Lexical PATO:0001005 latency GO:0030431 sleep

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ar-ibrahim commented Feb 6, 2023 •
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subject_id subject_label match_type quality quality_label attribute attribute_label
EFO:0010076 femoral neck size Lexical PATO:0000117 size UBERON:0007119 femoral neck
EFO:0010949 upper face morphology measurement Lexical PATO:0000051 morphology UBERON:0001456 face
EFO:0008038 bmi-adjusted hip bone size Lexical PATO:0000117 size UBERON:0001272 hip bone
EFO:0004505 telomere length Lexical PATO:0000122 length GO:0005696 telomere
EFO:0007842 chin morphology measurement Lexical PATO:0000051 morphology UBERON:0008199 chin
EFO:0009286 heart relative wall thickness Lexical PATO:0000915 thickness UBERON:0000948 heart
EFO:0004844 hip bone size Lexical PATO:0000117 size UBERON:0001272 hip bone
EFO:0600005 ganglion cell inner plexiform layer thickness measurement Lexical PATO:0000915 thickness UBERON:0000045 ganglion
EFO:0600005 ganglion cell inner plexiform layer thickness measurement Lexical PATO:0000915 thickness CL:0000000 cell
EFO:0007824 hair shape measurement Lexical PATO:0000052 shape UBERON:0001037 hair
EFO:0009278 cranial vault morphology measurement Lexical PATO:0000051 morphology UBERON:0004339 cranial vault
EFO:0007844 forehead morphology measurement Lexical PATO:0000051 morphology UBERON:0008200 forehead
EFO:0004577 infant head circumference Lexical PATO:0001648 circumference UBERON:0000033 head
EFO:0005053 internal carotid intimal medial thickness Lexical PATO:0000915 thickness UBERON:0001532 internal carotid
EFO:0007789 bmi-adjusted waist circumference Lexical PATO:0001648 circumference UBERON:0037468 waist
EFO:0005852 heschl's gyrus morphology measurement Lexical PATO:0000051 morphology UBERON:0000200 gyrus
EFO:0005037 aortic root size Lexical PATO:0000117 size UBERON:0010172 aortic root
EFO:0004841 digit length ratio Lexical PATO:0000122 length UBERON:0002544 digit
EFO:0007821 hair morphology measurement Lexical PATO:0000051 morphology UBERON:0001037 hair
EFO:0004860 common carotid intimal medial thickness Lexical PATO:0000915 thickness UBERON:0005396 carotid
EFO:0007739 left superior temporal gyrus thickness measurement Lexical PATO:0000915 thickness UBERON:0002769 superior temporal gyrus
EFO:0011044 bmi-adjusted neck circumference Lexical PATO:0001648 circumference UBERON:0000974 neck
EFO:0010948 lower face morphology measurement Lexical PATO:0000051 morphology UBERON:0001456 face
EFO:0600002 retinal layer thickness measurement Lexical PATO:0000915 thickness UBERON:0001781 retinal layer
EFO:0007117 carotid artery intima media thickness Lexical PATO:0000915 thickness UBERON:0005396 carotid artery
EFO:0600004 retinal nerve fibre layer thickness measurement Lexical PATO:0000915 thickness UBERON:0006134 nerve fibre
EFO:0007823 facial hair thickness measurement Lexical PATO:0000915 thickness UBERON:0001037 hair
EFO:0008593 ldl particle size measurement Lexical PATO:0000117 size GO:0034362 LDL particle
EFO:0009278 cranial vault shape measurement Lexical PATO:0000052 shape UBERON:0004339 cranial vault
EFO:0004306 erythrocyte size determination Lexical PATO:0000117 size CL:0000232 erythrocyte
EFO:0008594 vldl particle size measurement Lexical PATO:0000117 size GO:0034361 VLDL particle
EFO:0004300 length of life Lexical PATO:0000122 length UBERON:0000104 life
EFO:0008592 hdl particle size measurement Lexical PATO:0000117 size GO:0034364 HDL particle
EFO:0600004 peripapillary retinal nerve fiber layer thickness measurement Lexical PATO:0000915 thickness UBERON:0006134 nerve fiber

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subject_id subject_label match_type quality quality_label attribute attribute_label
EFO:0005200 antiphospholipid antibody measurement Lexical PATO:0000001 quality GO:0042571 antibody
EFO:0600074 anti-human polyomavirus 6 antibody measurement Lexical PATO:0000001 quality GO:0042571 antibody
EFO:0009273 anti-epstein barr virus antibody measurement Lexical PATO:0000001 quality GO:0042571 antibody
EFO:0010150 anti-anoctamin 2 antibody measurement Lexical PATO:0000001 quality GO:0042571 antibody
EFO:0010087 anti-meningococcal c serum bactericidal antibody measurement Lexical PATO:0000001 quality GO:0042571 antibody
EFO:0009896 anti-thyroglobulin antibody measurement Lexical PATO:0000001 quality GO:0042571 antibody
EFO:0004556 antibody measurement Lexical PATO:0000001 quality GO:0042571 antibody
EFO:0005666 thyroid peroxidase antibody measurement Lexical PATO:0000001 quality GO:0042571 antibody
EFO:0004733 anti-cyclic citrullinated peptide antibody measurement Lexical PATO:0000001 quality GO:0042571 antibody
EFO:0600073 anti-wu polyomavirus antibody measurement Lexical PATO:0000001 quality GO:0042571 antibody
EFO:0005949 antinuclear antibody measurement Lexical PATO:0000001 quality GO:0042571 antibody
EFO:0009273 anti-ebv antibody measurement Lexical PATO:0000001 quality GO:0042571 antibody

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subject_id subject_label match_type quality quality_label attribute attribute_label
EFO:0007663 childhood aggressive behaviour measurement Lexical PATO:0000001 quality GO:0007610 behaviour
EFO:0009480 coping behaviour measurement Lexical PATO:0000001 quality GO:0007610 behaviour
EFO:0005671 smoking behaviour measurement Lexical PATO:0000001 quality GO:0007610 behaviour
EFO:0007052 antisocial behaviour measurement Lexical PATO:0000001 quality GO:0007610 behaviour
EFO:0006882 suicide behaviour measurement Lexical PATO:0000001 quality GO:0007610 behaviour
EFO:0007877 risky sexual behaviour measurement Lexical PATO:0000001 quality GO:0007610 behaviour
EFO:0007862 reproductive behaviour measurement Lexical PATO:0000001 quality GO:0019098 reproductive behaviour
EFO:0007826 aggressive behaviour measurement Lexical PATO:0000001 quality GO:0007610 behaviour
EFO:0008538 helping behavior measurement Lexical PATO:0000001 quality GO:0007610 behavior
EFO:0004782 behavior or behavioral disorder measurement Lexical PATO:0000001 quality GO:0007610 behavior
EFO:0007052 adult antisocial behaviour measurement Lexical PATO:0000001 quality GO:0007610 behaviour

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ar-ibrahim commented Mar 2, 2023 •
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subject_id subject_label match_type quality quality_label attribute attribute_label
EFO:0600068 gene expression measurement Lexical PATO:0000001 quality GO:0010467 gene expression
EFO:0600070 interleukin-6 gene expression measurement Lexical PATO:0000001 quality GO:0010467 gene expression
EFO:0600069 tumor necrosis factor alpha gene expression measurement Lexical PATO:0000001 quality GO:0010467 gene expression
EFO:0600079 glucocorticoid receptor gene expression measurement Lexical PATO:0000001 quality GO:0010467 gene expression
EFO:0020899 flg gene expression measurement Lexical PATO:0000001 quality GO:0010467 gene expression

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subject_id subject_label quality quality_label attribute attribute_label
EFO:0008265 platelet-derived growth factor receptor beta measurement PATO:0000001 quality GO:0040007 growth
EFO:0020381 fibroblast growth factor 20 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020387 fibroblast growth factor 9 measurement PATO:0000001 quality GO:0040007 growth
EFO:0010782 fibroblast growth factor 19 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020360 epidermal growth factor receptor substrate 15-like 1 measurement PATO:0000001 quality GO:0040007 growth
EFO:0008314 vascular endothelial growth factor receptor 2 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020379 fibroblast growth factor 17 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020475 insulin-like growth factor-binding protein 2 measurement PATO:0000001 quality GO:0040007 growth
EFO:0004818 transforming growth factor beta measurement PATO:0000001 quality GO:0040007 growth
EFO:0020391 fibroblast growth factor receptor 4 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020650 platelet-derived growth factor subunit b measurement PATO:0000001 quality GO:0040007 growth
EFO:0004628 insulin like growth factor measurement PATO:0000001 quality GO:0040007 growth
EFO:0004762 vascular endothelial growth factor measurement PATO:0000001 quality GO:0040007 growth
EFO:0020388 fibroblast growth factor receptor 1 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020382 fibroblast growth factor 4 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020847 vascular endothelial growth factor a, isoform 121 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020375 fibroblast growth factor 1 measurement PATO:0000001 quality GO:0040007 growth
EFO:0009181 growth differentiation factor 15 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020471 inhibitor of growth protein 1 measurement PATO:0000001 quality GO:0040007 growth
EFO:0010783 fibroblast growth factor 21 measurement PATO:0000001 quality GO:0040007 growth
EFO:0008302 transforming growth factor-beta-induced protein ig-h3 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020476 insulin-like growth factor-binding protein 4 measurement PATO:0000001 quality GO:0040007 growth
EFO:0008315 vascular endothelial growth factor receptor 3 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020477 insulin-like growth factor-binding protein 5 measurement PATO:0000001 quality GO:0040007 growth
EFO:0008161 insulin-like growth factor-binding protein 7 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020384 fibroblast growth factor 7 measurement PATO:0000001 quality GO:0040007 growth
EFO:0008152 hepatocyte growth factor activator measurement PATO:0000001 quality GO:0040007 growth
EFO:0020389 fibroblast growth factor receptor 2 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020648 platelet-derived growth factor c measurement PATO:0000001 quality GO:0040007 growth
EFO:0020780 transforming growth factor beta-1 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020383 fibroblast growth factor 6 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020848 vascular endothelial growth factor c measurement PATO:0000001 quality GO:0040007 growth
EFO:0020376 fibroblast growth factor 10 measurement PATO:0000001 quality GO:0040007 growth
EFO:0010924 proheparin-binding egf-like growth factor measurement PATO:0000001 quality GO:0040007 growth
EFO:0010784 fibroblast growth factor 5 measurement PATO:0000001 quality GO:0040007 growth
EFO:0010804 vascular endothelial growth factor a measurement PATO:0000001 quality GO:0040007 growth
EFO:0010798 transforming growth factor-alpha measurement PATO:0000001 quality GO:0040007 growth
EFO:0008129 fibroblast growth factor 2 measurement PATO:0000001 quality GO:0040007 growth
EFO:0006903 hepatocyte growth factor measurement PATO:0000001 quality GO:0040007 growth
EFO:0020478 insulin-like growth factor-binding protein 6 measurement PATO:0000001 quality GO:0040007 growth
EFO:0008229 melanoma-derived growth regulatory protein measurement PATO:0000001 quality GO:0040007 growth
EFO:0020359 epidermal growth factor receptor measurement PATO:0000001 quality GO:0040007 growth
EFO:0020781 transforming growth factor beta-2 measurement PATO:0000001 quality GO:0040007 growth
EFO:0008153 hepatocyte growth factor receptor measurement PATO:0000001 quality GO:0040007 growth
EFO:0020377 fibroblast growth factor 12 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020473 insulin-like growth factor 1 receptor measurement PATO:0000001 quality GO:0040007 growth
EFO:0020179 bdnf/nt-3 growth factors receptor measurement PATO:0000001 quality GO:0040007 growth
EFO:0010799 transforming growth factor-beta measurement PATO:0000001 quality GO:0040007 growth
EFO:0020438 heparin-binding egf-like growth factor measurement PATO:0000001 quality GO:0040007 growth
EFO:0009381 fibroblast growth factor 23 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020284 connective tissue growth factor measurement PATO:0000001 quality GO:0040007 growth
EFO:0020380 fibroblast growth factor 18 measurement PATO:0000001 quality GO:0040007 growth
EFO:0008264 platelet-derived growth factor bb measurement PATO:0000001 quality GO:0040007 growth
EFO:0020386 fibroblast growth factor 8 isoform b measurement PATO:0000001 quality GO:0040007 growth
EFO:0008035 beta-nerve growth factor measurement PATO:0000001 quality GO:0040007 growth
EFO:0008154 hepatocyte growth factor-like protein measurement PATO:0000001 quality GO:0040007 growth
EFO:0020378 fibroblast growth factor 16 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020782 transforming growth factor beta-3 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020474 insulin-like growth factor-binding protein 1 measurement PATO:0000001 quality GO:0040007 growth
EFO:0008130 fibroblast growth factor basic measurement PATO:0000001 quality GO:0040007 growth
EFO:0008297 teratocarcinoma-derived growth factor 1 measurement PATO:0000001 quality GO:0040007 growth
EFO:0006900 endothelial growth factor measurement PATO:0000001 quality GO:0040007 growth
EFO:0020448 high affinity nerve growth factor receptor measurement PATO:0002070 affinity GO:0040007 growth
EFO:0020613 nt-3 growth factor receptor measurement PATO:0000001 quality GO:0040007 growth
EFO:0020779 transforming growth factor beta receptor type 3 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020390 fibroblast growth factor receptor 3 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020425 growth arrest-specific protein 1 measurement PATO:0000001 quality GO:0040007 growth
EFO:0020439 hepatoma-derived growth factor-related protein 2 measurement PATO:0000001 quality GO:0040007 growth
EFO:0009368 hepatocyte growth factor activator-like protein measurement PATO:0000001 quality GO:0040007 growth

@ar-ibrahim ar-ibrahim mentioned this issue Mar 16, 2023
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rays22 commented Jul 31, 2023 •
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I am curating these 344:

subject_id EFO label
EFO:0007697 left superior temporal gyrus grey matter volume measurement
EFO:0009202 Reticulocyte Mean Corpuscular Hemoglobin Measurement
EFO:0009204 Corpuscular Hemoglobin Concentration Distribution Width
EFO:0009231 Reticulocyte Hemoglobin Distribution Width
EFO:0004767 visceral:subcutaneous adipose tissue ratio
EFO:0004841 digit length ratio
EFO:0004913 lentiform nucleus measurement
EFO:0005191 waist height ratio
EFO:0005192 red blood cell distribution width
EFO:0006516 superior frontal gyrus grey matter volume measurement
EFO:0007849 functional brain measurement
EFO:0007932 multiple keratinocyte carcinoma susceptibility measurement
EFO:0007984 platelet component distribution width
EFO:0007989 monocyte percentage of leukocytes
EFO:0007990 neutrophil percentage of leukocytes
EFO:0007991 eosinophil percentage of leukocytes
EFO:0007992 basophil percentage of leukocytes
EFO:0007993 lymphocyte percentage of leukocytes
EFO:0008003 heart rate variability measurement
EFO:0009184 heart rate response to exercise
EFO:0009185 heart rate response to recovery post exercise
EFO:0009188 Red cell distribution width
EFO:0009230 Reticulocyte Corpuscular Hemoglobin Distribution Width
EFO:0009403 granule cell layer dentate gyrus volume
EFO:0010083 dentate gyrus volume measurement
EFO:0010289 caudal anterior cingulate cortex volume measurement
EFO:0010290 caudal middle frontal gyrus volume measurement
EFO:0010305 fusiform gyrus volume measurement
EFO:0010311 lateral occipital cortex volume measurement
EFO:0010312 lateral orbital frontal cortex volume measurement
EFO:0010333 temporal horn of lateral ventricle volume measurement
EFO:0010572 growth rate measurement
EFO:0010972 blood phosphate measurement
EFO:0021498 cerebellum white matter volume change measurement
EFO:0600025 aortic vascular smooth muscle cell calcification measurement
EFO:0600026 aortic vascular smooth muscle cell proliferation measurement
EFO:0600084 bowel opening frequency
EFO:0600087 narrow occludable anterior chamber angle
EFO:0010069 nerve conduction velocity
EFO:0008421 non-alcoholic fatty liver disease severity measurement
EFO:0009791 fatty acid desaturase enzyme activity measurement
EFO:0010914 fatty acid-binding protein, adipocyte measurement
EFO:0020373 fatty acid-binding protein
EFO:0009250 Prorubricyte Count
EFO:0007967 blood osmolality measurement
EFO:0007783 mosaic loss of chromosome Y measurement
EFO:0009239 Mature Plasma Cell Count
EFO:0005668 anterior chamber depth measurement
EFO:0010073 number of teeth measurement
EFO:0008358 dorsolateral prefrontal cortex functional measurement
EFO:0008301 toll-like receptor 4:Lymphocyte antigen 96 complex measurement
EFO:0009187 immature platelet fraction
EFO:0009238 Immature Plasma Cell Count
EFO:0009253 Immature Reticulocyte Fraction Measurement
EFO:0004839 CD4:CD8 lymphocyte ratio
EFO:0007956 monocyte:lymphocyte ratio
EFO:0008446 platelet-to-lymphocyte ratio
EFO:0008447 neutrophil-to-lymphocyte ratio
EFO:0009186 platelet larger cell ratio
EFO:0009233 Blood Cell Count Ratio Measurement
EFO:0009701 visceral:total adipose tissue ratio
EFO:0009779 tri-iodothyronine/thyroxine ratio measurement
EFO:0010940 microglial activation measurement
EFO:0600042 serum clozapine-to-N-desmethylclozapine ratio measurement
EFO:0600088 lymphocyte:monocyte ratio
EFO:0007617 pure tone hearing measurement
EFO:0020318 dentin matrix acidic phosphoprotein 1 measurement
EFO:0007719 carotid artery external diameter measurement
EFO:0007720 carotid artery internal diameter measurement
EFO:0021786 aortic diameter
EFO:0021787 ascending aortic diameter
EFO:0021788 descending aortic diameter
EFO:0021825 pulmonary artery root diameter measurement
EFO:0021826 proximal pulmonary artery diameter measurement
EFO:0006937 optic disc area measurement
EFO:0006940 optic cup area measurement
EFO:0007722 carotid artery wall cross sectional area measurement
EFO:0010736 cortical surface area measurement
EFO:0600036 muscle fiber cross-sectional area measurement
EFO:0004501 HOMA-IR
EFO:0008408 susceptibility to strep throat measurement
EFO:0008413 susceptibility to urinary tract infection measurement
EFO:0021827 pulmonary artery strain measurement
EFO:0003912 ankle brachial index
EFO:0006335 systolic blood pressure
EFO:0006336 diastolic blood pressure
EFO:0006943 blood pressure change measurement
EFO:0006944 systolic blood pressure change measurement
EFO:0006945 diastolic blood pressure change measurement
EFO:0007721 carotid artery central pulse pressure measurement
EFO:0007723 carotid artery mean blood pressure measurement
EFO:0004348 hematocrit
EFO:0004526 mean corpuscular volume
EFO:0004584 mean platelet volume
EFO:0006930 brain volume measurement
EFO:0006931 nucleus accumbens volume
EFO:0006932 putamen volume
EFO:0006933 pallidum volume
EFO:0006934 amygdala volume
EFO:0008080 cerebrospinal fluid volume measurement
EFO:0008367 infant cerebrospinal fluid volume measurement
EFO:0009397 hippocampus molecular layer volume
EFO:0009398 hippocampal tail volume
EFO:0009399 subiculum volume
EFO:0009400 presubiculum volume
EFO:0009402 hippocampus fimbria volume
EFO:0009404 hippocampal fissure volume
EFO:0009405 parasubiculum volume
EFO:0010144 frontal lobe volume measurement
EFO:0010145 occipital lobe volume measurement
EFO:0010146 parietal lobe volume measurement
EFO:0010147 temporal lobe volume measurement
EFO:0010286 banks of the superior temporal sulcus volume measurement
EFO:0010287 brain cortex volume measurement
EFO:0010291 cerebellar cortex volume measurement
EFO:0010292 cerebral cortex volume measurement
EFO:0010293 choroid plexus volume measurement
EFO:0010294 cingulate cortex volume measurement
EFO:0010295 corpus callosum anterior volume measurement
EFO:0010296 corpus callosum central volume measurement
EFO:0010297 corpus callosum mid-anterior volume measurement
EFO:0010298 corpus callosum posterior volume measurement
EFO:0010299 corpus callosum volume measurement
EFO:0010300 corpus collosum mid-posterior volume measurement
EFO:0010301 cuneus cortex volume measurement
EFO:0010302 entorhinal cortex volume measurement
EFO:0010303 fourth ventricle volume measurement
EFO:0010304 frontal pole volume measurement
EFO:0010307 inferior parietal cortex volume measurement
EFO:0010308 inferior temporal gyrus volume measurement
EFO:0010309 insular cortex volume measurement
EFO:0010310 isthmus cingulate cortex volume measurement
EFO:0010313 limbic lobe volume measurement
EFO:0010314 lingual gyrus volume measurement
EFO:0010315 medial orbital frontal cortex volume measurement
EFO:0010316 middle temporal gyrus volume measurement
EFO:0010317 paracentral lobule volume measurement
EFO:0010318 parahippocampal gyrus volume measurement
EFO:0010319 pars opercularis volume measurement
EFO:0010320 pars orbitalis volume measurement
EFO:0010321 pars triangularis volume measurement
EFO:0010322 pericalcarine cortex volume measurement
EFO:0010323 postcentral gyrus volume measurement
EFO:0010324 posterior cingulate cortex volume measurement
EFO:0010325 precentral gyrus volume measurement
EFO:0010326 precuneus cortex volume measurement
EFO:0010327 rostral anterior cingulate cortex volume measurement
EFO:0010328 rostral middle frontal gyrus volume measurement
EFO:0010329 superior frontal gyrus volume measurement
EFO:0010330 superior parietal cortex volume measurement
EFO:0010331 superior temporal gyrus volume measurement
EFO:0010332 supramarginal gyrus volume measurement
EFO:0010334 temporal pole volume measurement
EFO:0010335 third ventricle volume measurement
EFO:0010336 transverse temporal cortex volume measurement
EFO:0010337 ventral diencephalon volume measurement
EFO:0010604 urine volume measurement
EFO:0010605 brain stem volume measurement
EFO:0021490 amygdala volume change measurement
EFO:0021493 nucleus accumbens volume change measurement
EFO:0021494 pallidum volume change measurement
EFO:0021495 putamen volume change measurement
EFO:0021497 cerebellum cortex volume change measurement
EFO:0021500 cortex volume change measurement
EFO:0021504 total brain volume change measurement
EFO:0600044 kidney volume
EFO:0600045 pancreas volume
EFO:0600048 liver volume
EFO:0007963 abnormal paneth cell measurement
EFO:0010759 male reproductive system measurement
EFO:0004308 leukocyte count
EFO:0007988 myeloid white cell count
EFO:0007997 granulocyte percentage of myeloid white cells
EFO:0009335 white matter growth measurement
EFO:0004310 partial thromboplastin time
EFO:0004304 blood sedimentation
EFO:0004351 resting heart rate
EFO:0005667 urinary albumin excretion rate
EFO:0600089 peritoneal solute transfer rate
EFO:0007618 hearing threshold measurement
EFO:0009936 Drugs affecting bone structure and mineralization use measurement
EFO:0005201 height growth measurement
EFO:0004306 erythrocyte indices
EFO:0010070 nerve conduction amplitude
EFO:0007772 calcaneal bone quantitative ultrasound measurement
EFO:0006869 skin conductance response frequency
EFO:0004528 mean corpuscular hemoglobin concentration
EFO:0009228 Reticulocyte Corpuscular Hemoglobin Concentration Mean
EFO:0009205 Corpuscular Hemoglobin Content
EFO:0009229 Reticulocyte Corpuscular Hemoglobin Content
EFO:0010818 sensory perception of dietary content
EFO:0007822 hair colour measurement
EFO:0004311 heart function measurement
EFO:0004463 angiotensin converting enzyme activity measurement
EFO:0004464 brain measurement
EFO:0004465 fasting blood glucose measurement
EFO:0004466 fasting blood insulin measurement
EFO:0004532 serum gamma-glutamyl transferase measurement
EFO:0004536 total blood protein measurement
EFO:0004550 amygdala reactivity measurement
EFO:0004569 brain serotonin transporter measurement
EFO:0004642 cortisol secretion measurement
EFO:0004735 serum alanine aminotransferase measurement
EFO:0004739 circulating cell free DNA measurement
EFO:0004741 blood urea nitrogen measurement
EFO:0004749 CCL2 measurement
EFO:0004764 adipose tissue measurement
EFO:0004765 visceral adipose tissue measurement
EFO:0004782 behavior or behavioral disorder measurement
EFO:0004864 renal sinus adipose tissue measurement
EFO:0004985 platelet reactivity measurement
EFO:0005036 platelet measurement
EFO:0005047 erythrocyte measurement
EFO:0005193 serum IgG glycosylation measurement
EFO:0005210 brain connectivity measurement
EFO:0005247 anti-Helicobacter pylori serum IgG measurement
EFO:0005267 serum copper measurement
EFO:0005298 allergic sensitization measurement
EFO:0005653 serum metabolite measurement
EFO:0005664 blood metabolite measurement
EFO:0005760 serum carcinoembryonic antigen measurement
EFO:0005849 serum lipase activity measurement
EFO:0006794 cerebrospinal fluid biomarker measurement
EFO:0006799 Lewy body dementia measurement
EFO:0006800 vascular brain injury measurement
EFO:0006828 plasma renin activity measurement
EFO:0006882 suicide behaviour measurement
EFO:0006913 prefrontal cortex cytoarchtiectural measurement
EFO:0006920 BNP measurement
EFO:0006942 facial pigmentation measurement
EFO:0006959 gene methylation measurement
EFO:0007019 milk allergy measurement
EFO:0007021 Lewy body measurement
EFO:0007578 blood copper measurement
EFO:0007593 chromatid break measurement
EFO:0007615 thrombus formation measurement
EFO:0007616 hearing measurement
EFO:0007657 cerebrospinal fluid clusterin measurement
EFO:0007716 carotid artery measurement
EFO:0007717 carotid artery geometry measurement
EFO:0007718 carotid artery stiffness measurement
EFO:0007724 carotid artery circumferential wall stress measurement
EFO:0007738 cingulate cortex measurement
EFO:0007744 lung disease severity measurement
EFO:0007781 stressful life event measurement
EFO:0007786 menstrual cycle measurement
EFO:0007807 erythrocyte cadmium measurement
EFO:0007852 thiopurine methyltransferase activity measurement
EFO:0007854 knee peak torque measurement
EFO:0007877 risky sexual behaviour measurement
EFO:0007937 blood protein measurement
EFO:0007964 gestational serum measurement
EFO:0007978 red blood cell density measurement
EFO:0007980 cerebral blood flow measurement
EFO:0008036 BMI-adjusted fasting blood glucose measurement
EFO:0008037 BMI-adjusted fasting blood insulin measurement
EFO:0008142 granulocyte colony-stimulating factor measurement
EFO:0008197 killer cell immunoglobulin-like receptor 2DL4 measurement
EFO:0008208 leukocyte immunoglobulin-like receptor subfamily B member 1 measurement
EFO:0008209 leukocyte immunoglobulin-like receptor subfamily B member 2 measurement
EFO:0008217 macrophage colony stimulating factor measurement
EFO:0008218 macrophage inflammatory protein 1a measurement
EFO:0008219 macrophage inflammatory protein 1b measurement
EFO:0008220 macrophage metalloelastase measurement
EFO:0008221 macrophage migration inhibitory factor measurement
EFO:0008222 macrophage scavenger receptor types I and II measurement
EFO:0008235 monocyte chemotactic protein 3 measurement
EFO:0008248 neutrophil collagenase measurement
EFO:0008262 platelet glycoprotein 4 measurement
EFO:0008263 platelet glycoprotein VI measurement
EFO:0008291 stem Cell Factor measurement
EFO:0008292 stem Cell Growth Factor beta measurement
EFO:0008295 T-lymphocyte surface antigen Ly-9 measurement
EFO:0008307 tuberculin skin test reactivity measurement
EFO:0008365 heart amyloid deposition measurement
EFO:0008375 macula measurement
EFO:0008389 putamen measurement
EFO:0008420 parietal cortex measurement
EFO:0008427 IgG fucosylation measurement
EFO:0008428 IgG sialylation measurement
EFO:0008450 fractional excretion of magnesium measurement
EFO:0008474 spine bone mineral density change measurement
EFO:0009010 HSV2 virologic severity measurement
EFO:0009274 Epstein Barr viral capsid antigen IgG measurement
EFO:0009325 basal ganglia growth measurement
EFO:0009326 brain growth measurement
EFO:0009327 cerebellum growth measurement
EFO:0009328 cerebral cortex growth measurement
EFO:0009331 erosive tooth wear measurement
EFO:0009334 prefrontal cortex growth measurement
EFO:0009349 Anti-herpes simplex virus 1 IgG measurement
EFO:0009350 Anti-herpes simplex virus 2 IgG measurement
EFO:0009366 quality of life during menstruation measurement
EFO:0009392 glucose metabolism decline measurement
EFO:0009411 CCL13 measurement
EFO:0009413 CCL15 measurement
EFO:0009415 CCL19 measurement
EFO:0009423 CXCL6 measurement
EFO:0009590 visual memory measurement
EFO:0009591 verbal memory measurement
EFO:0009698 gestational blood glucose measurement
EFO:0009700 visual perception measurement
EFO:0009703 red blood cell folate measurement
EFO:0009790 asparaginase activity measurement
EFO:0009931 Agents acting on the renin-angiotensin system use measurement
EFO:0009933 Thyroid preparation use measurement
EFO:0010079 corneal endothelial cell measurement
EFO:0010082 nerve conduction measurement
EFO:0010120 fasting blood glucose change measurement
EFO:0010128 immunoglobulin isotype switching measurement
EFO:0010135 urine specific gravity measurement
EFO:0010137 leukocyte esterase measurement
EFO:0010155 taste liking measurement
EFO:0010789 monocyte chemotactic protein-2 measurement
EFO:0010790 monocyte chemotactic protein-4 measurement
EFO:0010913 eosinophil cationic protein measurement
EFO:0010921 N-terminal prohormone brain natriuretic peptide measurement
EFO:0011014 health-related quality of life measurement
EFO:0020050 bile acid measurement
EFO:0020171 B-cell receptor CD22 measurement
EFO:0020191 brain natriuretic peptide 32 measurement
EFO:0020311 cytotoxic and regulatory t-cell molecule measurement
EFO:0020312 cytotoxic t-lymphocyte protein 4 measurement
EFO:0020416 granulocyte colony-stimulating factor receptor measurement
EFO:0020470 inhibin beta A chain:inhibin beta B chain heterodimer measurement
EFO:0020518 killer cell immunoglobulin-like receptor 3DL2 measurement
EFO:0020519 killer cell immunoglobulin-like receptor 3DS1 measurement
EFO:0020520 killer cell lectin-like receptor subfamily F member 1 measurement
EFO:0020539 lymphatic vessel endothelial hyaluronic acid receptor 1 measurement
EFO:0020540 lymphocyte activation gene 3 protein measurement
EFO:0020541 lymphocyte antigen 86 measurement
EFO:0020546 macrophage colony-stimulating factor 1 measurement
EFO:0020547 macrophage colony-stimulating factor 1 receptor measurement
EFO:0020548 macrophage mannose receptor 1 measurement
EFO:0020605 neutrophil elastase measurement
EFO:0020644 platelet factor 4 measurement
EFO:0020645 platelet glycoprotein ib alpha chain measurement
EFO:0020657 proliferating cell nuclear antigen measurement
EFO:0020761 t-lymphocyte activation antigen CD80 measurement
EFO:0020762 t-lymphocyte activation antigen CD86 measurement
EFO:0020788 troponin i
EFO:0020895 serum albumin change measurement
EFO:0020901 chylomicron change measurement
EFO:0600071 blood glutathione peroxidase measurement

@rays22 rays22 mentioned this issue Jul 31, 2023
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@ar-ibrahim
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The following terms were curated as part of this ticket #250:

subject_id subject_label
EFO:0020760 t-cell surface glycoprotein cd4 measurement
EFO:0020354 ephrin type-b receptor 4 measurement
EFO:0020654 programmed cell death 1 ligand 1 measurement
EFO:0020374 fibrinogen gamma chain measurement
EFO:0020813 tumor necrosis factor receptor superfamily member 3 measurement
EFO:0020793 tumor necrosis factor ligand superfamily member 13b measurement
EFO:0010796 stam binding protein measurement
EFO:0020805 tumor necrosis factor receptor superfamily member 14 measurement
EFO:0008030 arylsulfatase b measurement
EFO:0020846 vascular cell adhesion protein 1 measurement
EFO:0020804 tumor necrosis factor receptor superfamily member 13c measurement
EFO:0020798 tumor necrosis factor ligand superfamily member 9 measurement
EFO:0020595 neural cell adhesion molecule l1-like protein measurement
EFO:0008259 phospholipase a2, membrane associated measurement
EFO:0020253 cell surface glycoprotein cd200 receptor 1 measurement
EFO:0020346 endoplasmic reticulum resident protein 29 measurement
EFO:0008284 sialic acid-binding ig-like lectin 14 measurement
EFO:0010802 tumor necrosis factor receptor superfamily member 9 measurement
EFO:0020739 sialic acid-binding ig-like lectin 7 measurement
EFO:0020350 ephrin type-a receptor 10 measurement
EFO:0020665 proteasome subunit alpha type-6 measurement
EFO:0008126 extracellular matrix protein 1 measurement
EFO:0004623 fibrinogen measurement
EFO:0010801 tumor necrosis factor ligand superfamily member 12 measurement
EFO:0020355 ephrin type-b receptor 6 measurement
EFO:0010918 lectin-like oxidized ldl receptor 1 measurement
EFO:0020112 26s proteasome non-atpase regulatory subunit 7 measurement
EFO:0020711 ribosome maturation protein sbds measurement
EFO:0020545 lysosome membrane protein 2 measurement
EFO:0020814 tumor necrosis factor receptor superfamily member 4 measurement
EFO:0020800 tumor necrosis factor receptor superfamily member 11a measurement
EFO:0020794 tumor necrosis factor ligand superfamily member 15 measurement
EFO:0020537 limbic system-associated membrane protein measurement
EFO:0020749 spectrin alpha chain, non-erythrocytic 1 measurement
EFO:0020263 coagulation factor ix measurement
EFO:0020467 importin subunit alpha-1 measurement
EFO:0020806 tumor necrosis factor receptor superfamily member 17 measurement
EFO:0008268 programmed cell death 1 ligand 2 measurement
EFO:0008253 ox-2 membrane glycoprotein measurement
EFO:0020799 tumor necrosis factor receptor superfamily member 10a measurement
EFO:0020563 membrane frizzled-related protein measurement
EFO:0004634 coagulation factor measurement
EFO:0020661 proteasome activator complex subunit 1 measurement
EFO:0020554 mast/stem cell growth factor receptor kit measurement
EFO:0020351 ephrin type-a receptor 2 measurement
EFO:0020200 c-type lectin domain family 1 member b measurement
EFO:0009178 neurofilament light chain measurement
EFO:0008285 sialic acid-binding ig-like lectin 6 measurement
EFO:0020810 tumor necrosis factor receptor superfamily member 21 measurement
EFO:0008119 endoplasmic reticulum aminopeptidase 1 measurement
EFO:0010696 soluble gp130 measurement
EFO:0020754 stem cell growth factor-alpha measurement
EFO:0020815 tumor necrosis factor receptor superfamily member 6b measurement
EFO:0020795 tumor necrosis factor ligand superfamily member 18 measurement
EFO:0020127 activin receptor type-1b measurement
EFO:0020807 tumor necrosis factor receptor superfamily member 18 measurement
EFO:0020264 coagulation factor ixab measurement
EFO:0020468 importin subunit beta-1 measurement
EFO:0020370 eukaryotic translation initiation factor 5a-1 measurement
EFO:0020131 advanced glycosylation end product-specific receptor, soluble measurement
EFO:0008087 coagulation factor v measurement
EFO:0008311 tumor necrosis factor-inducible gene 6 protein measurement
EFO:0020564 membrane metallo-endopeptidase-like 1 measurement
EFO:0020801 tumor necrosis factor receptor superfamily member 11b measurement
EFO:0010931 tumor necrosis factor receptor 1 measurement
EFO:0020441 heterogeneous nuclear ribonucleoprotein a/b measurement
EFO:0004684 tumor necrosis factor-alpha measurement
EFO:0008079 cell adhesion molecule-related/down-regulated by oncogenes measurement
EFO:0008032 basal cell adhesion molecule measurement
EFO:0020662 proteasome activator complex subunit 3 measurement
EFO:0020367 eukaryotic translation initiation factor 4 gamma 2 measurement
EFO:0020201 c-type lectin domain family 4 member k measurement
EFO:0020352 ephrin type-a receptor 3 measurement
EFO:0008238 myeloid cell surface antigen cd33 measurement
EFO:0008286 sialic acid-binding ig-like lectin 9 measurement
EFO:0020811 tumor necrosis factor receptor superfamily member 25 measurement
EFO:0020368 eukaryotic translation initiation factor 4e-binding protein 2 measurement
EFO:0020573 mitochondrial import inner membrane translocase subunit tim14 measurement
EFO:0020602 neuronal cell adhesion molecule measurement
EFO:0020330 dna repair protein rad51 homolog 1 measurement
EFO:0020796 tumor necrosis factor ligand superfamily member 4 measurement
EFO:0020593 neural cell adhesion molecule 1, 120 kda isoform measurement
EFO:0008310 tumor necrosis factor receptor superfamily member edar measurement
EFO:0020469 inhibin beta a chain measurement
EFO:0008308 tumor necrosis factor beta measurement
EFO:0010794 signaling lymphocytic activation molecule 1 measurement
EFO:0020808 tumor necrosis factor receptor superfamily member 19 measurement
EFO:0008223 mannan-binding lectin serine protease 1 measurement
EFO:0020816 tumor necrosis factor receptor superfamily member 8 measurement
EFO:0008596 chylomicron measurement
EFO:0020802 tumor necrosis factor receptor superfamily member 12a measurement
EFO:0020265 coagulation factor x measurement
EFO:0008288 small nuclear ribonucleoprotein f measurement
EFO:0020442 heterogeneous nuclear ribonucleoprotein k measurement
EFO:0020251 cell adhesion molecule 1 measurement
EFO:0020663 proteasome subunit alpha type-1 measurement
EFO:0020202 c-type lectin domain family 4 member m measurement
EFO:0020256 chloride intracellular channel protein 1 measurement
EFO:0008124 ephrin type-b receptor 2 measurement
EFO:0020715 s-phase kinase-associated protein 1 measurement
EFO:0020353 ephrin type-a receptor 5 measurement
EFO:0020369 eukaryotic translation initiation factor 5 measurement
EFO:0008384 tumor necrosis factor receptor ii measurement
EFO:0020812 tumor necrosis factor receptor superfamily member 27 measurement
EFO:0020594 neural cell adhesion molecule l1 measurement
EFO:0010762 advanced glycosylation end product-specific receptor ligand measurement
EFO:0008309 tumor necrosis factor receptor superfamily member 19l measurement
EFO:0020803 tumor necrosis factor receptor superfamily member 13b measurement
EFO:0020797 tumor necrosis factor ligand superfamily member 6, soluble form measurement
EFO:0010057 vascular cell adhesion molecule-1 measurement
EFO:0008250 nkg2-d type ii integral membrane protein measurement
EFO:0020443 heterogeneous nuclear ribonucleoprotein q measurement
EFO:0020252 cell adhesion molecule 3 measurement
EFO:0020664 proteasome subunit alpha type-2 measurement
EFO:0010920 membrane-bound aminopeptidase p measurement
EFO:0008582 thrombin activatable fibrinolysis inhibitor activation peptide measurement
EFO:0008123 ephrin type-a receptor 1 measurement
EFO:0010800 tumor necrosis factor ligand superfamily member 10 measurement
EFO:0020557 matrix extracellular phosphoglycoprotein measurement
EFO:0004575 eukocyte-endothelial cell adhesion molecule 2 measurement
EFO:0005918 osteoprotegerin measurement
EFO:0009178 neurofilament light measurement
EFO:0020957 c-type lectin domain family 3 member b measurement
EFO:0008317 vldl cholesterol measurement
EFO:0011036 matrix metalloproteinase (mmp)-degraded type i collagen (c1m) measurement
EFO:0010057 soluble vascular cell adhesion molecule-1 measurement
EFO:0007776 coagulation factor ii measurement

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