From a3d06ce3d1d243c5cf42c648b95a24e60f2367f7 Mon Sep 17 00:00:00 2001 From: arwa-ebi Date: Fri, 10 Feb 2023 11:05:35 +0000 Subject: [PATCH 1/2] Update oba-efo.sssom.tsv - issue #215 - mapped antibody measurement terms to existing OBA term OBA:VT0002460 --- src/mappings/oba-efo.sssom.tsv | 14 +++++++++++++- 1 file changed, 13 insertions(+), 1 deletion(-) diff --git a/src/mappings/oba-efo.sssom.tsv b/src/mappings/oba-efo.sssom.tsv index 40468f2a..a98fb019 100644 --- a/src/mappings/oba-efo.sssom.tsv +++ b/src/mappings/oba-efo.sssom.tsv @@ -146,4 +146,16 @@ GO:1903492 response to aspirin response to stimulus skos:relatedMatch OBA:204001 GO:1903493 response to clopidogrel response to stimulus skos:relatedMatch OBA:2040062 HumanCurated EFO OBA 2022-06-29 orcid:0000-0001-8314-2140 GO:1904014 response to serotonin response to stimulus skos:relatedMatch OBA:2040027 HumanCurated EFO OBA 2022-06-29 orcid:0000-0001-8314-2140 GO:1905119 response to haloperidol response to stimulus skos:relatedMatch OBA:2040092 HumanCurated EFO OBA 2022-06-29 orcid:0000-0001-8314-2140 -GO:1990054 response to temozolomide response to stimulus skos:relatedMatch OBA:2040120 HumanCurated EFO OBA 2022-06-29 orcid:0000-0001-8314-2140 \ No newline at end of file +GO:1990054 response to temozolomide response to stimulus skos:relatedMatch OBA:2040120 HumanCurated EFO OBA 2022-06-29 orcid:0000-0001-8314-2140 +EFO:0005200 antiphospholipid antibody measurement measurement skos:broadMatch OBA:VT0002460 blood immunoglobulin amount HumanCurated EFO OBA 1 2023-02-10 orcid:0000-0001-6757-4744 +EFO:0600074 anti-human polyomavirus 6 antibody measurement measurement skos:broadMatch OBA:VT0002460 blood immunoglobulin amount HumanCurated EFO OBA 1 2023-02-10 orcid:0000-0001-6757-4744 +EFO:0009273 anti-epstein barr virus antibody measurement measurement skos:broadMatch OBA:VT0002460 blood immunoglobulin amount HumanCurated EFO OBA 1 2023-02-10 orcid:0000-0001-6757-4744 +EFO:0010150 anti-anoctamin 2 antibody measurement measurement skos:broadMatch OBA:VT0002460 blood immunoglobulin amount HumanCurated EFO OBA 1 2023-02-10 orcid:0000-0001-6757-4744 +EFO:0010087 anti-meningococcal c serum bactericidal antibody measurement measurement skos:broadMatch OBA:VT0002460 blood immunoglobulin amount HumanCurated EFO OBA 1 2023-02-10 orcid:0000-0001-6757-4744 +EFO:0009896 anti-thyroglobulin antibody measurement measurement skos:broadMatch OBA:VT0002460 blood immunoglobulin amount HumanCurated EFO OBA 1 2023-02-10 orcid:0000-0001-6757-4744 +EFO:0004556 antibody measurement measurement skos:closeMatch OBA:VT0002460 blood immunoglobulin amount HumanCurated EFO OBA 1 2023-02-10 orcid:0000-0001-6757-4744 +EFO:0005666 thyroid peroxidase antibody measurement measurement skos:broadMatch OBA:VT0002460 blood immunoglobulin amount HumanCurated EFO OBA 1 2023-02-10 orcid:0000-0001-6757-4744 +EFO:0004733 anti-cyclic citrullinated peptide antibody measurement measurement skos:broadMatch OBA:VT0002460 blood immunoglobulin amount HumanCurated EFO OBA 1 2023-02-10 orcid:0000-0001-6757-4744 +EFO:0600073 anti-wu polyomavirus antibody measurement measurement skos:broadMatch OBA:VT0002460 blood immunoglobulin amount HumanCurated EFO OBA 1 2023-02-10 orcid:0000-0001-6757-4744 +EFO:0005949 antinuclear antibody measurement measurement skos:broadMatch OBA:VT0002460 blood immunoglobulin amount HumanCurated EFO OBA 1 2023-02-10 orcid:0000-0001-6757-4744 +EFO:0009273 anti-ebv antibody measurement measurement skos:broadMatch OBA:VT0002460 blood immunoglobulin amount HumanCurated EFO OBA 1 2023-02-10 orcid:0000-0001-6757-4744 From 27e66e03da8ec916de5bb22e453df06fab4c6574 Mon Sep 17 00:00:00 2001 From: arwa-ebi Date: Tue, 14 Feb 2023 09:55:58 +0000 Subject: [PATCH 2/2] Update oba-efo.sssom.tsv - removed mappings and added to efo_oba.sssom.tsv --- src/mappings/oba-efo.sssom.tsv | 12 ------------ 1 file changed, 12 deletions(-) diff --git a/src/mappings/oba-efo.sssom.tsv b/src/mappings/oba-efo.sssom.tsv index a98fb019..640162ee 100644 --- a/src/mappings/oba-efo.sssom.tsv +++ b/src/mappings/oba-efo.sssom.tsv @@ -147,15 +147,3 @@ GO:1903493 response to clopidogrel response to stimulus skos:relatedMatch OBA:20 GO:1904014 response to serotonin response to stimulus skos:relatedMatch OBA:2040027 HumanCurated EFO OBA 2022-06-29 orcid:0000-0001-8314-2140 GO:1905119 response to haloperidol response to stimulus skos:relatedMatch OBA:2040092 HumanCurated EFO OBA 2022-06-29 orcid:0000-0001-8314-2140 GO:1990054 response to temozolomide response to stimulus skos:relatedMatch OBA:2040120 HumanCurated EFO OBA 2022-06-29 orcid:0000-0001-8314-2140 -EFO:0005200 antiphospholipid antibody measurement measurement skos:broadMatch OBA:VT0002460 blood immunoglobulin amount HumanCurated EFO OBA 1 2023-02-10 orcid:0000-0001-6757-4744 -EFO:0600074 anti-human polyomavirus 6 antibody measurement measurement skos:broadMatch OBA:VT0002460 blood immunoglobulin amount HumanCurated EFO OBA 1 2023-02-10 orcid:0000-0001-6757-4744 -EFO:0009273 anti-epstein barr virus antibody measurement measurement skos:broadMatch OBA:VT0002460 blood immunoglobulin amount HumanCurated EFO OBA 1 2023-02-10 orcid:0000-0001-6757-4744 -EFO:0010150 anti-anoctamin 2 antibody measurement measurement skos:broadMatch OBA:VT0002460 blood immunoglobulin amount HumanCurated EFO OBA 1 2023-02-10 orcid:0000-0001-6757-4744 -EFO:0010087 anti-meningococcal c serum bactericidal antibody measurement measurement skos:broadMatch OBA:VT0002460 blood immunoglobulin amount HumanCurated EFO OBA 1 2023-02-10 orcid:0000-0001-6757-4744 -EFO:0009896 anti-thyroglobulin antibody measurement measurement skos:broadMatch OBA:VT0002460 blood immunoglobulin amount HumanCurated EFO OBA 1 2023-02-10 orcid:0000-0001-6757-4744 -EFO:0004556 antibody measurement measurement skos:closeMatch OBA:VT0002460 blood immunoglobulin amount HumanCurated EFO OBA 1 2023-02-10 orcid:0000-0001-6757-4744 -EFO:0005666 thyroid peroxidase antibody measurement measurement skos:broadMatch OBA:VT0002460 blood immunoglobulin amount HumanCurated EFO OBA 1 2023-02-10 orcid:0000-0001-6757-4744 -EFO:0004733 anti-cyclic citrullinated peptide antibody measurement measurement skos:broadMatch OBA:VT0002460 blood immunoglobulin amount HumanCurated EFO OBA 1 2023-02-10 orcid:0000-0001-6757-4744 -EFO:0600073 anti-wu polyomavirus antibody measurement measurement skos:broadMatch OBA:VT0002460 blood immunoglobulin amount HumanCurated EFO OBA 1 2023-02-10 orcid:0000-0001-6757-4744 -EFO:0005949 antinuclear antibody measurement measurement skos:broadMatch OBA:VT0002460 blood immunoglobulin amount HumanCurated EFO OBA 1 2023-02-10 orcid:0000-0001-6757-4744 -EFO:0009273 anti-ebv antibody measurement measurement skos:broadMatch OBA:VT0002460 blood immunoglobulin amount HumanCurated EFO OBA 1 2023-02-10 orcid:0000-0001-6757-4744