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Updating to new NCBI resources #22

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oganm opened this issue Feb 15, 2024 · 1 comment
Open

Updating to new NCBI resources #22

oganm opened this issue Feb 15, 2024 · 1 comment

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@oganm
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oganm commented Feb 15, 2024

Homologene is finally being retired while their new resources allow access to up to date data. Will likely either update this package or make a new one to be able to seamlessly replace the use the functions here

https://www.ncbi.nlm.nih.gov/datasets/docs/v2/getting_started/
https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genes/download-ortholog-data-package/

@oganm
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oganm commented Feb 17, 2024

API is probably the better tool but a quick and dirty wrapper for the command line tools

https://github.com/oganm/ncbiDatasets

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